Rroxscaffold_3G00234400

Cytochrome C biogenesis protein transmembrane region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0009309
Physical Location & Seq
Reverse (-)
20756442 .. 20759147
2706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00234400.1

Sequence Viewer

Length: 1143 bp
ATGGAAAGGCTTCTGTCCTCTTCTTCATCCCCAACCCCTAAACTCCATCTTAAACAACCCTCTTCCTTTCACCACCCACTCGCTCGTCTCGACTTCCCCAAGCTCAATTTCCCCTCCTCTTCAAAGCTGCCCAGTTTGAGACGGACCGCCGCCGTCTCTGTTTCCTGCAAACATCAAAACGCATCTCCATTTTCTTCGTCGGAGGGTTTGCCGTCGAGCCGGGTCGGGTCGGGGCCAAATGGGTCGGCGCCAAATCCCCTGCTTCTCAATCAGATCGCAGATGGCGCTTCCAAGCAACGCAAGGCCATCACCACTGGGGCATTTGTTGCGCTTTCTGCTCTTATTTTGGTCTTAGTACAACCTGCCTTTGCACCAGCGGCTCTTGCTTCTTTTGAAACTGCAACTAAGACAGGTGGTCCAGCTGCTGTTGCAGTTGGGGGAAGACTCATCCAGACTGAATTACTTAGTAGTGCATGGACCGGTTTCTTTGCTGGTTGCTTGCACACATTATCAGGGCCTGACCACCTAGCTGCTTTGGCTCCACTCTCAATTGGGCGTACCCGCATTGAAAGTGCTCTTGTTGGAGCCCTCTGGGGATGTGGCCATGATGCTGGCCAGGTTATCTTTGGATTAATATTTCTACTACTGAAGGACCGGCTCCATATTGAAGTTATTCGAACTTGGGGCACAAGAGTTGTTGGGCTTACTTTACTAGTTATTGGTGCTATGGGCATTAAGGAAGCTTCAGAAGTCCCGAGTCCTTGTGTTGCCTTGGAGAATGGCGAGTGTGATGTTAGTGTGTACGAAACTCTTGATAACCCAACTGTTGGGAAGAAGAAGATTGGTTTTGCTACTTTTGCCACCGGAATTGTGCATGGGCTGCAGCCAGATGCATTGATGATGGTGTTGCCTGCACTTGCTTTGCCATCTCGTGTTGCTGGCGCTGCATTTCTAGTTATGTTCTTAGTTGGGACCGTAGTTGCCATGGGAAGCTACACAGTCTTTCTAGGCTCATGTAGTCAGGCATTAAAGGACAGAGTGCCCAGAATAACAGAGAAACTGACATGGGCTTCTTCCCTGATTGCAATTGCTCTTGGATTTGCCATTATTATCAGCCAGTTCTTTGGGTATAGCCTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DsbD_2

Protein Analysis

380

Amino Acids

39.77

Weight (kDa)

9.39

Isoelectric Point (pI)

36.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DsbD_2 PF13386 207 - 352 6.3e-06 Cytochrome C biogenesis protein transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 370
AccB1I GGYRCC 1 cut(s) 247
AccB7I CCANNNNNTGG 1 cut(s) 827
AciI CCGC 4 cut(s) 147, 150, 377, 562
AcoI YGGCCR 2 cut(s) 601, 613
AcuI CTGAAG 2 cut(s) 668, 729
AcyI GRCGYC 1 cut(s) 248
AfaI GTAC 3 cut(s) 357, 559, 803
AfiI CCNNNNNNNGG 1 cut(s) 827
AgeI ACCGGT 1 cut(s) 479
AgsI TTSAA 4 cut(s) 123, 395, 569, 668
AhdI GACNNNNNGTC 1 cut(s) 414
AhlI ACTAGT 1 cut(s) 712
AjnI CCWGG 1 cut(s) 615
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AluBI AGCT 6 cut(s) 103, 127, 422, 530, 743, 993
AluI AGCT 6 cut(s) 103, 127, 422, 530, 743, 993
Alw21I GWGCWC 1 cut(s) 577
Alw26I GTCTC 3 cut(s) 92, 133, 160
AlwNI CAGNNNCTG 2 cut(s) 425, 518
Ama87I CYCGRG 1 cut(s) 754
AoxI GGCC 5 cut(s) 233, 303, 515, 601, 613
ApeKI GCWGC 6 cut(s) 127, 422, 530, 880, 883, 944
AseI ATTAAT 1 cut(s) 632
AsiGI ACCGGT 1 cut(s) 479
Asp700I GAANNNNTTC 2 cut(s) 9, 672
AspLEI GCGC 4 cut(s) 250, 287, 331, 944
AspS9I GGNCC 7 cut(s) 144, 233, 416, 477, 515, 652, 972
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 2 cut(s) 62, 301
AsuII TTCGAA 1 cut(s) 676
AvaI CYCGRG 1 cut(s) 754
AvaII GGWCC 5 cut(s) 144, 416, 477, 652, 972
BaeGI GKGCMC 2 cut(s) 689, 1044
BalI TGGCCA 2 cut(s) 603, 615
BanI GGYRCC 1 cut(s) 247
BanII GRGCYC 1 cut(s) 589
BauI CACGAG 1 cut(s) 930
BbsI GAAGAC 1 cut(s) 448
Bbv12I GWGCWC 1 cut(s) 577
BbvI GCAGC 6 cut(s) 114, 409, 517, 867, 895, 931
BccI CCATC 5 cut(s) 54, 275, 314, 895, 934
BceAI ACGGC 2 cut(s) 137, 196
BciT130I CCWGG 1 cut(s) 617
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 3 cut(s) 92, 133, 160
BcuI ACTAGT 1 cut(s) 712
BfaI CTAG 4 cut(s) 527, 713, 953, 1007
BfmI CTRYAG 1 cut(s) 881
BfoI RGCGCY 3 cut(s) 251, 288, 945
BfuAI ACCTGC 1 cut(s) 370
BisI GCNGC 8 cut(s) 128, 150, 378, 423, 531, 881, 884, 945
BlsI GCNGC 8 cut(s) 129, 151, 379, 424, 532, 882, 885, 946
Bme1390I CCNGG 2 cut(s) 221, 617
Bme18I GGWCC 5 cut(s) 144, 416, 477, 652, 972
BmeRI GACNNNNNGTC 1 cut(s) 414
BmeT110I CYCGRG 1 cut(s) 754
BmgT120I GGNCC 7 cut(s) 144, 233, 416, 477, 515, 652, 972
BmiI GGNNCC 6 cut(s) 234, 249, 540, 586, 659, 973
BmrFI CCNGG 2 cut(s) 221, 617
BmrI ACTGGG 2 cut(s) 126, 324
BmsI GCATC 3 cut(s) 191, 598, 880
BmuI ACTGGG 2 cut(s) 126, 324
BpiI GAAGAC 1 cut(s) 448
Bpu14I TTCGAA 1 cut(s) 676
BpuMI CCSGG 1 cut(s) 221
BsaHI GRCGYC 1 cut(s) 248
BsaJI CCNNGG 2 cut(s) 771, 984
BsaWI WCCGGW 2 cut(s) 479, 863
Bsc4I CCNNNNNNNGG 1 cut(s) 827
Bse118I RCCGGY 2 cut(s) 479, 654
Bse1I ACTGG 3 cut(s) 132, 319, 1117
BseBI CCWGG 1 cut(s) 617
BseDI CCNNGG 2 cut(s) 771, 984
BseGI GGATG 3 cut(s) 26, 447, 602
BseLI CCNNNNNNNGG 1 cut(s) 827
BseNI ACTGG 3 cut(s) 132, 319, 1117
BseRI GAGGAG 1 cut(s) 106
BseSI GKGCMC 2 cut(s) 689, 1044
BseXI GCAGC 6 cut(s) 114, 409, 517, 867, 895, 931
BsgI GTGCAG 1 cut(s) 897
BshFI GGCC 5 cut(s) 235, 305, 517, 603, 615
BshNI GGYRCC 1 cut(s) 247
BshTI ACCGGT 1 cut(s) 479
BsiHKAI GWGCWC 1 cut(s) 577
BsiHKCI CYCGRG 1 cut(s) 754
BsiSI CCGG 4 cut(s) 220, 480, 655, 864
BslFI GGGAC 2 cut(s) 737, 985
BslI CCNNNNNNNGG 1 cut(s) 827
BsmAI GTCTC 3 cut(s) 92, 133, 160
BsmBI CGTCTC 3 cut(s) 92, 133, 160
BsmFI GGGAC 2 cut(s) 737, 985
BsnI GGCC 5 cut(s) 235, 305, 517, 603, 615
BsoBI CYCGRG 1 cut(s) 754
Bsp119I TTCGAA 1 cut(s) 676
Bsp1286I GDGCHC 4 cut(s) 577, 589, 689, 1044
Bsp143I GATC 1 cut(s) 273
Bsp19I CCATGG 1 cut(s) 984
BspACI CCGC 4 cut(s) 147, 150, 377, 562
BspANI GGCC 5 cut(s) 235, 305, 517, 603, 615
BspLI GGNNCC 6 cut(s) 234, 249, 540, 586, 659, 973
BspMAI CTGCAG 1 cut(s) 885
BspMI ACCTGC 1 cut(s) 370
BspT104I TTCGAA 1 cut(s) 676
BspT107I GGYRCC 1 cut(s) 247
BsrFI RCCGGY 2 cut(s) 479, 654
BsrI ACTGG 3 cut(s) 132, 319, 1117
BssAI RCCGGY 2 cut(s) 479, 654
BssECI CCNNGG 2 cut(s) 771, 984
BssMI GATC 1 cut(s) 273
BssNI GRCGYC 1 cut(s) 248
BssSI CACGAG 1 cut(s) 930
BssT1I CCWWGG 2 cut(s) 771, 984
Bst2BI CACGAG 1 cut(s) 930
Bst2UI CCWGG 1 cut(s) 617
Bst4CI ACNGT 3 cut(s) 826, 976, 1000
Bst6I CTCTTC 3 cut(s) 25, 67, 124
BstACI GRCGYC 1 cut(s) 248
BstAPI GCANNNNNTGC 2 cut(s) 326, 880
BstBI TTCGAA 1 cut(s) 676
BstC8I GCNNGC 4 cut(s) 500, 613, 912, 940
BstDEI CTNAG 4 cut(s) 352, 405, 464, 964
BstDSI CCRYGG 1 cut(s) 984
BstF5I GGATG 3 cut(s) 26, 447, 602
BstH2I RGCGCY 3 cut(s) 251, 288, 945
BstHHI GCGC 4 cut(s) 250, 287, 331, 944
BstKTI GATC 1 cut(s) 276
BstMAI GTCTC 3 cut(s) 92, 133, 160
BstMBI GATC 1 cut(s) 273
BstNI CCWGG 1 cut(s) 617
BstSCI CCNGG 2 cut(s) 219, 615
BstSFI CTRYAG 1 cut(s) 881
BstSLI GKGCMC 2 cut(s) 689, 1044
BstV1I GCAGC 6 cut(s) 114, 409, 517, 867, 895, 931
BstV2I GAAGAC 1 cut(s) 448
BstXI CCANNNNNNTGG 2 cut(s) 611, 1124
BsuRI GGCC 5 cut(s) 235, 305, 517, 603, 615
BtgI CCRYGG 1 cut(s) 984
BtsCI GGATG 3 cut(s) 26, 447, 602
BtsIMutI CAGTG 1 cut(s) 312
BveI ACCTGC 1 cut(s) 370
Cac8I GCNNGC 4 cut(s) 500, 613, 912, 940
CaiI CAGNNNCTG 2 cut(s) 425, 518
CfoI GCGC 4 cut(s) 250, 287, 331, 944
Cfr10I RCCGGY 2 cut(s) 479, 654
Cfr13I GGNCC 7 cut(s) 144, 233, 416, 477, 515, 652, 972
CpoI CGGWCCG 1 cut(s) 144
Csp6I GTAC 3 cut(s) 356, 558, 802
CspAI ACCGGT 1 cut(s) 479
CspCI CAANNNNNGTGG 2 cut(s) 850, 885
CspI CGGWCCG 1 cut(s) 144
CviAII CATG 6 cut(s) 474, 605, 875, 985, 1014, 1065
CviQI GTAC 3 cut(s) 356, 558, 802
DdeI CTNAG 4 cut(s) 352, 405, 464, 964
DinI GGCGCC 1 cut(s) 249
DpnI GATC 1 cut(s) 275
DpnII GATC 1 cut(s) 273
DriI GACNNNNNGTC 1 cut(s) 414
EaeI YGGCCR 2 cut(s) 601, 613
Eam1104I CTCTTC 3 cut(s) 25, 67, 124
Eam1105I GACNNNNNGTC 1 cut(s) 414
EarI CTCTTC 3 cut(s) 25, 67, 124
Eco130I CCWWGG 2 cut(s) 771, 984
Eco24I GRGCYC 1 cut(s) 589
Eco47I GGWCC 5 cut(s) 144, 416, 477, 652, 972
Eco57I CTGAAG 2 cut(s) 668, 729
Eco88I CYCGRG 1 cut(s) 754
EcoO109I RGGNCCY 1 cut(s) 515
EcoRII CCWGG 1 cut(s) 615
EcoT14I CCWWGG 2 cut(s) 771, 984
EcoT22I ATGCAT 1 cut(s) 895
EcoT38I GRGCYC 1 cut(s) 589
EgeI GGCGCC 1 cut(s) 249
EheI GGCGCC 1 cut(s) 249
ErhI CCWWGG 2 cut(s) 771, 984
Esp3I CGTCTC 3 cut(s) 92, 133, 160
FaeI CATG 6 cut(s) 477, 608, 878, 988, 1017, 1068
FaqI GGGAC 2 cut(s) 737, 985
FatI CATG 6 cut(s) 473, 604, 874, 984, 1013, 1064
FauI CCCGC 1 cut(s) 569
Fnu4HI GCNGC 8 cut(s) 128, 150, 378, 423, 531, 881, 884, 945
FokI GGATG 3 cut(s) 13, 434, 609
FriOI GRGCYC 1 cut(s) 589
Fsp4HI GCNGC 8 cut(s) 128, 150, 378, 423, 531, 881, 884, 945
FspBI CTAG 4 cut(s) 527, 713, 953, 1007
GlaI GCGC 4 cut(s) 249, 286, 330, 943
GluI GCNGC 8 cut(s) 128, 150, 378, 423, 531, 881, 884, 945
HaeII RGCGCY 3 cut(s) 251, 288, 945
HaeIII GGCC 5 cut(s) 235, 305, 517, 603, 615
HapII CCGG 4 cut(s) 220, 480, 655, 864
HhaI GCGC 4 cut(s) 250, 287, 331, 944
Hin1I GRCGYC 1 cut(s) 248
Hin1II CATG 6 cut(s) 477, 608, 878, 988, 1017, 1068
Hin6I GCGC 4 cut(s) 248, 285, 329, 942
HinP1I GCGC 4 cut(s) 248, 285, 329, 942
HindIII AAGCTT 1 cut(s) 741
HinfI GANTC 2 cut(s) 444, 757
HpaII CCGG 4 cut(s) 220, 480, 655, 864
HphI GGTGA 2 cut(s) 62, 301
Hpy166II GTNNAC 1 cut(s) 802
Hpy188I TCNGA 3 cut(s) 202, 273, 748
Hpy188III TCNNGA 4 cut(s) 89, 451, 754, 812
Hpy8I GTNNAC 1 cut(s) 802
Hpy99I CGWCG 2 cut(s) 202, 217
HpyAV CCTTC 1 cut(s) 643
HpyCH4III ACNGT 3 cut(s) 826, 976, 1000
HpyF3I CTNAG 4 cut(s) 352, 405, 464, 964
Hsp92I GRCGYC 1 cut(s) 248
Hsp92II CATG 6 cut(s) 477, 608, 878, 988, 1017, 1068
HspAI GCGC 4 cut(s) 248, 285, 329, 942
KasI GGCGCC 1 cut(s) 247
Kzo9I GATC 1 cut(s) 273
LmnI GCTCC 3 cut(s) 544, 584, 663
Lsp1109I GCAGC 6 cut(s) 114, 409, 517, 867, 895, 931
LweI GCATC 3 cut(s) 191, 598, 880
MaeI CTAG 4 cut(s) 527, 713, 953, 1007
MalI GATC 1 cut(s) 275
MboI GATC 1 cut(s) 273
MfeI CAATTG 2 cut(s) 549, 1086
MhlI GDGCHC 4 cut(s) 577, 589, 689, 1044
MlsI TGGCCA 2 cut(s) 603, 615
MluCI AATT 5 cut(s) 106, 458, 549, 867, 1086
MluNI TGGCCA 2 cut(s) 603, 615
Mly113I GGCGCC 1 cut(s) 248
MlyI GAGTC 2 cut(s) 438, 766
MmeI TCCRAC 2 cut(s) 180, 562
MnlI CCTC 6 cut(s) 28, 70, 124, 127, 196, 599
Mox20I TGGCCA 2 cut(s) 603, 615
Mph1103I ATGCAT 1 cut(s) 895
MroXI GAANNNNTTC 2 cut(s) 9, 672
MscI TGGCCA 2 cut(s) 603, 615
MseI TTAA 4 cut(s) 51, 632, 735, 1028
Msp20I TGGCCA 2 cut(s) 603, 615
MspA1I CMGCKG 2 cut(s) 377, 422
MspI CCGG 4 cut(s) 220, 480, 655, 864
MspR9I CCNGG 2 cut(s) 221, 617
MunI CAATTG 2 cut(s) 549, 1086
MvaI CCWGG 1 cut(s) 617
NarI GGCGCC 1 cut(s) 248
NciI CCSGG 1 cut(s) 221
NcoI CCATGG 1 cut(s) 984
NdeII GATC 1 cut(s) 273
NlaIII CATG 6 cut(s) 477, 608, 878, 988, 1017, 1068
NlaIV GGNNCC 6 cut(s) 234, 249, 540, 586, 659, 973
NsiI ATGCAT 1 cut(s) 895
NspV TTCGAA 1 cut(s) 676
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PdmI GAANNNNTTC 2 cut(s) 9, 672
PflMI CCANNNNNTGG 1 cut(s) 827
PinAI ACCGGT 1 cut(s) 479
PkrI GCNGC 8 cut(s) 129, 151, 379, 424, 532, 882, 885, 946
PleI GAGTC 2 cut(s) 438, 765
PluTI GGCGCC 1 cut(s) 251
PpsI GAGTC 2 cut(s) 438, 765
PshBI ATTAAT 1 cut(s) 632
Psp6I CCWGG 1 cut(s) 615
PspGI CCWGG 1 cut(s) 615
PspN4I GGNNCC 6 cut(s) 234, 249, 540, 586, 659, 973
PspPI GGNCC 7 cut(s) 144, 233, 416, 477, 515, 652, 972
PstI CTGCAG 1 cut(s) 885
PstNI CAGNNNCTG 2 cut(s) 425, 518
PvuII CAGCTG 1 cut(s) 422
RsaI GTAC 3 cut(s) 357, 559, 803
RsaNI GTAC 3 cut(s) 356, 558, 802
Rsr2I CGGWCCG 1 cut(s) 144
RsrII CGGWCCG 1 cut(s) 144
SaqAI TTAA 4 cut(s) 51, 632, 735, 1028
SatI GCNGC 8 cut(s) 128, 150, 378, 423, 531, 881, 884, 945
Sau3AI GATC 1 cut(s) 273
Sau96I GGNCC 7 cut(s) 144, 233, 416, 477, 515, 652, 972
SchI GAGTC 2 cut(s) 438, 766
ScrFI CCNGG 2 cut(s) 221, 617
SduI GDGCHC 4 cut(s) 577, 589, 689, 1044
SfaNI GCATC 3 cut(s) 191, 598, 880
SfcI CTRYAG 1 cut(s) 881
SfoI GGCGCC 1 cut(s) 249
SfuI TTCGAA 1 cut(s) 676
SinI GGWCC 5 cut(s) 144, 416, 477, 652, 972
SpeI ACTAGT 1 cut(s) 712
Sse9I AATT 5 cut(s) 106, 458, 549, 867, 1086
SsiI CCGC 4 cut(s) 147, 150, 377, 562
SspDI GGCGCC 1 cut(s) 247
SspI AATATT 1 cut(s) 636
SspMI CTAG 4 cut(s) 527, 713, 953, 1007
StyD4I CCNGG 2 cut(s) 219, 615
StyI CCWWGG 2 cut(s) 771, 984
TaaI ACNGT 3 cut(s) 826, 976, 1000
TaqI TCGA 3 cut(s) 90, 215, 676
TasI AATT 5 cut(s) 106, 458, 549, 867, 1086
TatI WGTACW 1 cut(s) 355
TauI GCSGC 2 cut(s) 152, 380
Tru1I TTAA 4 cut(s) 51, 632, 735, 1028
Tru9I TTAA 4 cut(s) 51, 632, 735, 1028
TscAI CASTG 1 cut(s) 319
TseI GCWGC 6 cut(s) 127, 422, 530, 880, 883, 944
TspDTI ATGAA 1 cut(s) 15
TspGWI ACGGA 1 cut(s) 157
TspRI CASTG 1 cut(s) 319
Van91I CCANNNNNTGG 1 cut(s) 827
VpaK11BI GGWCC 5 cut(s) 144, 416, 477, 652, 972
VspI ATTAAT 1 cut(s) 632
XcmI CCANNNNNNNNNTGG 1 cut(s) 623
XmnI GAANNNNTTC 2 cut(s) 9, 672
XspI CTAG 4 cut(s) 527, 713, 953, 1007
Zsp2I ATGCAT 1 cut(s) 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.