pycom05g11620

Cytochrome C biogenesis protein transmembrane region

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
15221832 .. 15224456
2625 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g11620.1

Sequence Viewer

Length: 1161 bp
ATGGAAAGGCTTCTGTCCTCTTCACCCCCAACCCCTTTGAAACTCCATCGAAAACCCTCTCCTTTCCTCGGTCGACTCGCCCGTATTGAACTTGGTTTTCCCGCGTCACAGCTGCCCAATCTCAGACGGGTCCGCTTGGTTTCCTGCAAACATCAAAACCCATCTCCATTTTCTTCTGGTTCTCCTTCTTCATCGGCGCCGTCGAACATTCTGCCGTCTCTCTCGTCGAACCGCGCCGGGTCGCCGAATGGGTCGGAGCCAAAATCCCAGATTCTCAATCAGATCGCAACCAGGGATTCTAAGCAGCGCAAGGCCATCACCACTGGAGCATTTGTTGCGCTTTCTGCACTTGTTTTGATCTTAATACAACCAGCTATTGCACCAGTGGCTTTTGCATCCTTTCCAACTGCAACCAACACTGGTAGCGCAGCCGCTGCTATTGGGGGAAGACTGATCCAGACAGAGTTGCTTAGTAGTGCATGGACTGGTTTCTTTGCTGGTTGCTTACACACATTATCAGGGCCAGACCACCTAGCTGCTTTGGCTCCACTCTCAATTGGACGTACCCGCATAGAAAGTGCCCTAGTCGGAGCCCTCTGGGGATGTGGCCATGACGCTGGCCAGGTTATCTTTGGCTTGATATTTCTTTTACTAAAGGATAGGCTTCATATTGAGATTATCCGAACTTGGGGCACAAGAGTTGTGGGGCTTACCCTACTAGTTATTGGTGGTATGGGTATTAAGGAAGCTTCAGAAATCCCTACTCCTTGTGTTGCCTTAGAGAAGGGCGAGTGTGATGTTAGTGTATATGAGTCTCTAGATAACCCTACAGTCGGAAAGAAGAAGATTGGTTTTGCTACTTTTGCCACTGGAATTGTCCACGGGCTGCAGCCAGATGCATTGATGATGGTCTTGCCAGCCCTCGCTTTGCCATCTCGAGTAGCTGGCGCTGCATTCCTGGTTATGTTTTTATTTGGGACCGTAGTTGCAATGGGAAGCTATACTGTCTTTCTAGGTTCATGTAGTCAGGCATTAAAGGATCGATCATGGTCATCTGTTCGCAGAATTACAGAGAAACTGACATGGGCTTCTTCCCTGGTTGCAATTGCTCTTGGGTTCGCCATCATCATCAGCCAGTTCTTCGGGTATAGCCTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

387

Amino Acids

40.79

Weight (kDa)

9.86

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 196
AccI GTMKAC 1 cut(s) 73
AccII CGCG 2 cut(s) 104, 234
AciI CCGC 5 cut(s) 102, 133, 232, 432, 568
AclWI GGATC 2 cut(s) 448, 1047
AcoI YGGCCR 2 cut(s) 607, 619
AcuI CTGAAG 1 cut(s) 735
AcyI GRCGYC 1 cut(s) 197
AfaI GTAC 1 cut(s) 565
AfiI CCNNNNNNNGG 3 cut(s) 68, 688, 833
AgsI TTSAA 2 cut(s) 40, 89
AhlI ACTAGT 1 cut(s) 718
AjnI CCWGG 4 cut(s) 290, 621, 957, 1095
AluBI AGCT 6 cut(s) 112, 374, 536, 749, 944, 999
AluI AGCT 6 cut(s) 112, 374, 536, 749, 944, 999
Alw26I GTCTC 2 cut(s) 222, 819
AlwI GGATC 2 cut(s) 448, 1047
AlwNI CAGNNNCTG 1 cut(s) 434
Ama87I CYCGRG 1 cut(s) 936
AoxI GGCC 4 cut(s) 312, 521, 607, 619
ApeKI GCWGC 8 cut(s) 112, 304, 428, 434, 536, 886, 889, 950
Asp700I GAANNNNTTC 1 cut(s) 9
AspLEI GCGC 6 cut(s) 199, 236, 309, 340, 428, 950
AspS9I GGNCC 3 cut(s) 130, 521, 978
AsuC2I CCSGG 1 cut(s) 238
AsuHPI GGTGA 2 cut(s) 15, 310
AvaI CYCGRG 1 cut(s) 936
AvaII GGWCC 2 cut(s) 130, 978
BaeGI GKGCMC 2 cut(s) 583, 695
BalI TGGCCA 2 cut(s) 609, 621
BanI GGYRCC 1 cut(s) 196
BanII GRGCYC 1 cut(s) 595
BbsI GAAGAC 1 cut(s) 454
BbvI GCAGC 8 cut(s) 99, 316, 421, 440, 523, 873, 901, 937
BccI CCATC 6 cut(s) 54, 169, 323, 901, 940, 1130
BceAI ACGGC 2 cut(s) 184, 199
BcgI CGANNNNNNTGC 2 cut(s) 193, 227
BciT130I CCWGG 4 cut(s) 292, 623, 959, 1097
BcnI CCSGG 1 cut(s) 238
BcoDI GTCTC 2 cut(s) 222, 819
BcuI ACTAGT 1 cut(s) 718
BfaI CTAG 5 cut(s) 533, 584, 719, 818, 1013
BfmI CTRYAG 2 cut(s) 828, 887
BfoI RGCGCY 2 cut(s) 200, 951
BisI GCNGC 9 cut(s) 113, 305, 429, 432, 435, 537, 887, 890, 951
BlsI GCNGC 9 cut(s) 114, 306, 430, 433, 436, 538, 888, 891, 952
Bme1390I CCNGG 5 cut(s) 238, 292, 623, 959, 1097
Bme18I GGWCC 2 cut(s) 130, 978
BmeT110I CYCGRG 1 cut(s) 936
BmgT120I GGNCC 3 cut(s) 130, 521, 978
BmiI GGNNCC 6 cut(s) 131, 198, 258, 546, 592, 979
BmrFI CCNGG 5 cut(s) 238, 292, 623, 959, 1097
BmsI GCATC 2 cut(s) 404, 886
BpiI GAAGAC 1 cut(s) 454
BpmI CTGGAG 1 cut(s) 345
BpuMI CCSGG 1 cut(s) 238
Bsa29I ATCGAT 1 cut(s) 1042
BsaHI GRCGYC 1 cut(s) 197
BsaJI CCNNGG 4 cut(s) 67, 291, 880, 1095
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 688, 833
Bse1I ACTGG 6 cut(s) 328, 383, 424, 490, 874, 1135
Bse3DI GCAATG 1 cut(s) 996
BseBI CCWGG 4 cut(s) 292, 623, 959, 1097
BseCI ATCGAT 1 cut(s) 1042
BseDI CCNNGG 4 cut(s) 67, 291, 880, 1095
BseGI GGATG 2 cut(s) 395, 608
BseLI CCNNNNNNNGG 3 cut(s) 68, 688, 833
BseMI GCAATG 1 cut(s) 996
BseMII CTCAG 1 cut(s) 136
BseNI ACTGG 6 cut(s) 328, 383, 424, 490, 874, 1135
BseSI GKGCMC 2 cut(s) 583, 695
BseXI GCAGC 8 cut(s) 99, 316, 421, 440, 523, 873, 901, 937
BsgI GTGCAG 1 cut(s) 330
Bsh1236I CGCG 2 cut(s) 104, 234
Bsh1285I CGRYCG 1 cut(s) 73
BshFI GGCC 4 cut(s) 314, 523, 609, 621
BshNI GGYRCC 1 cut(s) 196
BshVI ATCGAT 1 cut(s) 1042
BsiEI CGRYCG 1 cut(s) 73
BsiHKCI CYCGRG 1 cut(s) 936
BsiSI CCGG 1 cut(s) 237
BslFI GGGAC 1 cut(s) 991
BslI CCNNNNNNNGG 3 cut(s) 68, 688, 833
BsmAI GTCTC 2 cut(s) 222, 819
BsmBI CGTCTC 1 cut(s) 222
BsmFI GGGAC 1 cut(s) 991
BsmI GAATGC 1 cut(s) 953
BsnI GGCC 4 cut(s) 314, 523, 609, 621
BsoBI CYCGRG 1 cut(s) 936
Bsp1286I GDGCHC 3 cut(s) 583, 595, 695
Bsp143I GATC 5 cut(s) 282, 357, 453, 1039, 1043
BspACI CCGC 5 cut(s) 102, 133, 232, 432, 568
BspANI GGCC 4 cut(s) 314, 523, 609, 621
BspCNI CTCAG 1 cut(s) 135
BspDI ATCGAT 1 cut(s) 1042
BspFNI CGCG 2 cut(s) 104, 234
BspLI GGNNCC 6 cut(s) 131, 198, 258, 546, 592, 979
BspMAI CTGCAG 1 cut(s) 891
BspPI GGATC 2 cut(s) 448, 1047
BspT107I GGYRCC 1 cut(s) 196
BsrDI GCAATG 1 cut(s) 996
BsrI ACTGG 6 cut(s) 328, 383, 424, 490, 874, 1135
BssECI CCNNGG 4 cut(s) 67, 291, 880, 1095
BssMI GATC 5 cut(s) 282, 357, 453, 1039, 1043
BssNI GRCGYC 1 cut(s) 197
Bst2UI CCWGG 4 cut(s) 292, 623, 959, 1097
Bst4CI ACNGT 3 cut(s) 832, 982, 1006
Bst6I CTCTTC 1 cut(s) 25
BstACI GRCGYC 1 cut(s) 197
BstAPI GCANNNNNTGC 2 cut(s) 335, 434
BstC8I GCNNGC 3 cut(s) 619, 918, 946
BstDEI CTNAG 4 cut(s) 122, 300, 470, 778
BstDSI CCRYGG 1 cut(s) 880
BstF5I GGATG 2 cut(s) 395, 608
BstFNI CGCG 2 cut(s) 104, 234
BstH2I RGCGCY 2 cut(s) 200, 951
BstHHI GCGC 6 cut(s) 199, 236, 309, 340, 428, 950
BstKTI GATC 5 cut(s) 285, 360, 456, 1042, 1046
BstMAI GTCTC 2 cut(s) 222, 819
BstMBI GATC 5 cut(s) 282, 357, 453, 1039, 1043
BstMCI CGRYCG 1 cut(s) 73
BstMWI GCNNNNNNNGC 7 cut(s) 335, 344, 386, 434, 542, 863, 950
BstNI CCWGG 4 cut(s) 292, 623, 959, 1097
BstSCI CCNGG 5 cut(s) 236, 290, 621, 957, 1095
BstSFI CTRYAG 2 cut(s) 828, 887
BstSLI GKGCMC 2 cut(s) 583, 695
BstUI CGCG 2 cut(s) 104, 234
BstV1I GCAGC 8 cut(s) 99, 316, 421, 440, 523, 873, 901, 937
BstV2I GAAGAC 1 cut(s) 454
BstXI CCANNNNNNTGG 1 cut(s) 617
Bsu15I ATCGAT 1 cut(s) 1042
BsuRI GGCC 4 cut(s) 314, 523, 609, 621
BsuTUI ATCGAT 1 cut(s) 1042
BtgI CCRYGG 1 cut(s) 880
BtsCI GGATG 2 cut(s) 395, 608
BtsIMutI CAGTG 4 cut(s) 321, 390, 417, 867
Cac8I GCNNGC 3 cut(s) 619, 918, 946
CaiI CAGNNNCTG 1 cut(s) 434
CfoI GCGC 6 cut(s) 199, 236, 309, 340, 428, 950
Cfr13I GGNCC 3 cut(s) 130, 521, 978
ClaI ATCGAT 1 cut(s) 1042
CseI GACGC 2 cut(s) 93, 623
Csp6I GTAC 1 cut(s) 564
CspCI CAANNNNNGTGG 4 cut(s) 684, 719, 856, 891
CviAII CATG 5 cut(s) 480, 611, 1020, 1047, 1083
CviQI GTAC 1 cut(s) 564
DdeI CTNAG 4 cut(s) 122, 300, 470, 778
DinI GGCGCC 1 cut(s) 198
DpnI GATC 5 cut(s) 284, 359, 455, 1041, 1045
DpnII GATC 5 cut(s) 282, 357, 453, 1039, 1043
EaeI YGGCCR 2 cut(s) 607, 619
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 595
Eco47I GGWCC 2 cut(s) 130, 978
Eco57I CTGAAG 1 cut(s) 735
Eco88I CYCGRG 1 cut(s) 936
EcoRII CCWGG 4 cut(s) 290, 621, 957, 1095
EcoT22I ATGCAT 1 cut(s) 901
EcoT38I GRGCYC 1 cut(s) 595
EgeI GGCGCC 1 cut(s) 198
EheI GGCGCC 1 cut(s) 198
Esp3I CGTCTC 1 cut(s) 222
FaeI CATG 5 cut(s) 483, 614, 1023, 1050, 1086
FaqI GGGAC 1 cut(s) 991
FatI CATG 5 cut(s) 479, 610, 1019, 1046, 1082
FauI CCCGC 2 cut(s) 109, 575
FblI GTMKAC 1 cut(s) 73
Fnu4HI GCNGC 9 cut(s) 113, 305, 429, 432, 435, 537, 887, 890, 951
FokI GGATG 2 cut(s) 382, 615
FriOI GRGCYC 1 cut(s) 595
Fsp4HI GCNGC 9 cut(s) 113, 305, 429, 432, 435, 537, 887, 890, 951
FspBI CTAG 5 cut(s) 533, 584, 719, 818, 1013
GlaI GCGC 6 cut(s) 198, 235, 308, 339, 427, 949
GluI GCNGC 9 cut(s) 113, 305, 429, 432, 435, 537, 887, 890, 951
GsuI CTGGAG 1 cut(s) 345
HaeII RGCGCY 2 cut(s) 200, 951
HaeIII GGCC 4 cut(s) 314, 523, 609, 621
HapII CCGG 1 cut(s) 237
HgaI GACGC 2 cut(s) 93, 623
HhaI GCGC 6 cut(s) 199, 236, 309, 340, 428, 950
Hin1I GRCGYC 1 cut(s) 197
Hin1II CATG 5 cut(s) 483, 614, 1023, 1050, 1086
Hin6I GCGC 6 cut(s) 197, 234, 307, 338, 426, 948
HinP1I GCGC 6 cut(s) 197, 234, 307, 338, 426, 948
HincII GTYRAC 1 cut(s) 74
HindII GTYRAC 1 cut(s) 74
HindIII AAGCTT 1 cut(s) 747
HinfI GANTC 4 cut(s) 75, 271, 296, 812
HpaII CCGG 1 cut(s) 237
HphI GGTGA 2 cut(s) 15, 310
Hpy166II GTNNAC 2 cut(s) 74, 880
Hpy188I TCNGA 7 cut(s) 125, 256, 282, 590, 683, 754, 836
Hpy188III TCNNGA 3 cut(s) 457, 818, 936
Hpy8I GTNNAC 2 cut(s) 74, 880
Hpy99I CGWCG 2 cut(s) 205, 229
HpyAV CCTTC 2 cut(s) 195, 778
HpyCH4III ACNGT 3 cut(s) 832, 982, 1006
HpyCH4IV ACGT 1 cut(s) 562
HpyF10VI GCNNNNNNNGC 7 cut(s) 335, 344, 386, 434, 542, 863, 950
HpyF3I CTNAG 4 cut(s) 122, 300, 470, 778
HpySE526I ACGT 1 cut(s) 562
Hsp92I GRCGYC 1 cut(s) 197
Hsp92II CATG 5 cut(s) 483, 614, 1023, 1050, 1086
HspAI GCGC 6 cut(s) 197, 234, 307, 338, 426, 948
KasI GGCGCC 1 cut(s) 196
Kzo9I GATC 5 cut(s) 282, 357, 453, 1039, 1043
LmnI GCTCC 4 cut(s) 256, 326, 550, 590
Lsp1109I GCAGC 8 cut(s) 99, 316, 421, 440, 523, 873, 901, 937
LweI GCATC 2 cut(s) 404, 886
MaeI CTAG 5 cut(s) 533, 584, 719, 818, 1013
MaeII ACGT 1 cut(s) 562
MaeIII GTNAC 1 cut(s) 105
MalI GATC 5 cut(s) 284, 359, 455, 1041, 1045
MboI GATC 5 cut(s) 282, 357, 453, 1039, 1043
MboII GAAGA 8 cut(s) 12, 165, 180, 459, 853, 856, 1083, 1132
MfeI CAATTG 2 cut(s) 555, 1104
MhlI GDGCHC 3 cut(s) 583, 595, 695
MlsI TGGCCA 2 cut(s) 609, 621
MluCI AATT 4 cut(s) 555, 873, 1065, 1104
MluNI TGGCCA 2 cut(s) 609, 621
Mly113I GGCGCC 1 cut(s) 197
MlyI GAGTC 2 cut(s) 69, 821
MmeI TCCRAC 4 cut(s) 234, 428, 568, 814
MnlI CCTC 5 cut(s) 28, 67, 77, 605, 932
Mox20I TGGCCA 2 cut(s) 609, 621
Mph1103I ATGCAT 1 cut(s) 901
MroXI GAANNNNTTC 1 cut(s) 9
MscI TGGCCA 2 cut(s) 609, 621
MseI TTAA 3 cut(s) 362, 741, 1034
Msp20I TGGCCA 2 cut(s) 609, 621
MspA1I CMGCKG 2 cut(s) 112, 434
MspI CCGG 1 cut(s) 237
MspR9I CCNGG 5 cut(s) 238, 292, 623, 959, 1097
MunI CAATTG 2 cut(s) 555, 1104
Mva1269I GAATGC 1 cut(s) 953
MvaI CCWGG 4 cut(s) 292, 623, 959, 1097
MvnI CGCG 2 cut(s) 104, 234
MwoI GCNNNNNNNGC 7 cut(s) 335, 344, 386, 434, 542, 863, 950
NarI GGCGCC 1 cut(s) 197
NciI CCSGG 1 cut(s) 238
NdeII GATC 5 cut(s) 282, 357, 453, 1039, 1043
NlaIII CATG 5 cut(s) 483, 614, 1023, 1050, 1086
NlaIV GGNNCC 6 cut(s) 131, 198, 258, 546, 592, 979
NmuCI GTSAC 1 cut(s) 105
NsiI ATGCAT 1 cut(s) 901
PaeR7I CTCGAG 1 cut(s) 936
PcsI WCGNNNNNNNCGW 2 cut(s) 79, 200
PctI GAATGC 1 cut(s) 953
PdmI GAANNNNTTC 1 cut(s) 9
PfeI GAWTC 2 cut(s) 271, 296
PkrI GCNGC 9 cut(s) 114, 306, 430, 433, 436, 538, 888, 891, 952
PleI GAGTC 2 cut(s) 69, 820
PluTI GGCGCC 1 cut(s) 200
PpsI GAGTC 2 cut(s) 69, 820
Psp6I CCWGG 4 cut(s) 290, 621, 957, 1095
PspGI CCWGG 4 cut(s) 290, 621, 957, 1095
PspN4I GGNNCC 6 cut(s) 131, 198, 258, 546, 592, 979
PspPI GGNCC 3 cut(s) 130, 521, 978
PstI CTGCAG 1 cut(s) 891
PstNI CAGNNNCTG 1 cut(s) 434
PvuII CAGCTG 1 cut(s) 112
RsaI GTAC 1 cut(s) 565
RsaNI GTAC 1 cut(s) 564
SalI GTCGAC 1 cut(s) 72
SaqAI TTAA 3 cut(s) 362, 741, 1034
SatI GCNGC 9 cut(s) 113, 305, 429, 432, 435, 537, 887, 890, 951
Sau3AI GATC 5 cut(s) 282, 357, 453, 1039, 1043
Sau96I GGNCC 3 cut(s) 130, 521, 978
SchI GAGTC 2 cut(s) 69, 821
ScrFI CCNGG 5 cut(s) 238, 292, 623, 959, 1097
SduI GDGCHC 3 cut(s) 583, 595, 695
SfaNI GCATC 2 cut(s) 404, 886
SfcI CTRYAG 2 cut(s) 828, 887
SfoI GGCGCC 1 cut(s) 198
Sfr274I CTCGAG 1 cut(s) 936
SinI GGWCC 2 cut(s) 130, 978
SlaI CTCGAG 1 cut(s) 936
SmlI CTYRAG 1 cut(s) 936
SmoI CTYRAG 1 cut(s) 936
SpeI ACTAGT 1 cut(s) 718
Sse9I AATT 4 cut(s) 555, 873, 1065, 1104
SsiI CCGC 5 cut(s) 102, 133, 232, 432, 568
SspDI GGCGCC 1 cut(s) 196
SspMI CTAG 5 cut(s) 533, 584, 719, 818, 1013
StyD4I CCNGG 5 cut(s) 236, 290, 621, 957, 1095
TaaI ACNGT 3 cut(s) 832, 982, 1006
TaiI ACGT 1 cut(s) 565
TaqI TCGA 6 cut(s) 49, 73, 203, 227, 937, 1042
TaqII GACCGA 1 cut(s) 59
TasI AATT 4 cut(s) 555, 873, 1065, 1104
TauI GCSGC 1 cut(s) 434
TfiI GAWTC 2 cut(s) 271, 296
Tru1I TTAA 3 cut(s) 362, 741, 1034
Tru9I TTAA 3 cut(s) 362, 741, 1034
TscAI CASTG 4 cut(s) 328, 390, 424, 874
TseFI GTSAC 1 cut(s) 105
TseI GCWGC 8 cut(s) 112, 304, 428, 434, 536, 886, 889, 950
Tsp45I GTSAC 1 cut(s) 105
TspDTI ATGAA 3 cut(s) 180, 656, 1008
TspRI CASTG 4 cut(s) 328, 390, 424, 874
VpaK11BI GGWCC 2 cut(s) 130, 978
XbaI TCTAGA 1 cut(s) 817
XcmI CCANNNNNNNNNTGG 1 cut(s) 629
XhoI CTCGAG 1 cut(s) 936
XmiI GTMKAC 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 9
XspI CTAG 5 cut(s) 533, 584, 719, 818, 1013
Zsp2I ATGCAT 1 cut(s) 901
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.