RLG00000001855

Cytochrome C biogenesis protein transmembrane region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0009309
Physical Location & Seq
Reverse (-)
22051684 .. 22054193
2510 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001855

Sequence Viewer

Length: 1134 bp
ATGGAAAGGCTTCTGTCCTCTTCATCCCCAACCCCTAAACTCCATCTTAAACAACCCTCTTCCTTTCACCACCCACTCGCTCGTCTCGACTTCCCCAAACTCAATTTCCCCTCTTCAAAGCTGCCCTGTTTGAGACGGACCGCCGTCTCTGTTTCCTGCAAACATCAAAACCCATCTCCATTTTCTTCGCCGGAGGGTTTGCCGTCGAACCGGGTCGGGTCGGGGACAAATGGGTCCGCGCCAAATCCCCTGCTTCTCAATCAGATCCCAGATGGCGCTTCTAAGCAACGCAAGGCCATCACCACTAGGGCTTTTGTTGCGCTTTCTGCTCTTATTTTGATCTTAGTACAACCTGCCTTTGCACCAGCGGCTCTTGCTTCTTTTCAAACTGCAACTAAGACAGGTGGTCCAGCTGCTGTTGCAGTTGGGGGAAGACTCATCCAGACTGAATTACTTAGTAGTGCATGGACCGGTTTCTTTGCTGGTTGCTTGCACACATTATCAGGGCCTGACCACCTAGCTGCTTTGGCTCCACTCTCAATTGGGCGTACCCGCATTGAAAGTGCTCTTGTTGGAGCCCTCTGGGGATGTGGCCATGATGCTGGCCAGGTTATCTTTGGATTAGTATTTCTACTACTGAAGGACCAGCTCCATATTGAAGTTATTCGAACTTGGGGCACAAGAGTTGTTGGGCTTACTTTACTAGTTATTGGTGCTATGGGCATTAAGGAAGCTTCAGAAGTCCCAAGTCCTTGTGTTGCCTTGGAGAATGGCGAGTGTGATGTTAGTGGGTACGAAACTCTTGATAACCCAACTGTTGGGAAGAAGAAGATTGGTTTTGCTACTTTTGCCACCGGAATTGTGCATGGGCTGCAGCCAGATGCATTGATGATGGTGTTGCCTGCACTTGCTTTGCCATCTCGTGTCGCTGGCGCTGCATTTCTACTTATGTTCTTAGTTGGGACCGTAGTTGCCATGGGAAGCTACACAGTCTTTCTAGGCTCATGTAGTCAGGCATTAAAGGACAGAGTGCCCAGAATAACAGAGAAACTGACATGGGCTTCTTCCCTGATTGCGATTGCTCTTGGATTTGCCATTATTATCAGCCAGTTCTTTGGGTATAGCCTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DsbD_2

Protein Analysis

378

Amino Acids

39.67

Weight (kDa)

9.41

Isoelectric Point (pI)

35.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DsbD_2 PF13386 205 - 349 8.1e-07 Cytochrome C biogenesis protein transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 232
Acc36I ACCTGC 1 cut(s) 361
AccB7I CCANNNNNTGG 1 cut(s) 818
AccII CGCG 1 cut(s) 239
AciI CCGC 4 cut(s) 141, 237, 368, 553
AclWI GGATC 1 cut(s) 259
AcoI YGGCCR 2 cut(s) 592, 604
AcuI CTGAAG 2 cut(s) 659, 720
AfaI GTAC 3 cut(s) 348, 550, 794
AfiI CCNNNNNNNGG 1 cut(s) 818
AgeI ACCGGT 1 cut(s) 470
AgsI TTSAA 4 cut(s) 117, 386, 560, 659
AhdI GACNNNNNGTC 1 cut(s) 405
AhlI ACTAGT 1 cut(s) 703
AjnI CCWGG 1 cut(s) 606
AjuI GAANNNNNNNTTGG 2 cut(s) 89, 121
AluBI AGCT 6 cut(s) 121, 413, 521, 649, 734, 984
AluI AGCT 6 cut(s) 121, 413, 521, 649, 734, 984
Alw21I GWGCWC 1 cut(s) 568
Alw26I GTCTC 3 cut(s) 89, 127, 151
AlwI GGATC 1 cut(s) 259
AlwNI CAGNNNCTG 2 cut(s) 416, 509
AoxI GGCC 4 cut(s) 294, 506, 592, 604
ApeKI GCWGC 6 cut(s) 121, 413, 521, 871, 874, 935
AsiGI ACCGGT 1 cut(s) 470
Asp700I GAANNNNTTC 2 cut(s) 9, 663
AspLEI GCGC 4 cut(s) 241, 278, 322, 935
AspS9I GGNCC 7 cut(s) 138, 234, 407, 468, 506, 643, 963
AsuC2I CCSGG 1 cut(s) 212
AsuHPI GGTGA 2 cut(s) 59, 292
AsuII TTCGAA 1 cut(s) 667
AvaII GGWCC 6 cut(s) 138, 234, 407, 468, 643, 963
BaeGI GKGCMC 2 cut(s) 680, 1035
BalI TGGCCA 2 cut(s) 594, 606
BanII GRGCYC 1 cut(s) 580
BauI CACGAG 1 cut(s) 921
BbsI GAAGAC 1 cut(s) 439
Bbv12I GWGCWC 1 cut(s) 568
BbvI GCAGC 6 cut(s) 108, 400, 508, 858, 886, 922
BccI CCATC 6 cut(s) 51, 181, 266, 305, 886, 925
BceAI ACGGC 2 cut(s) 128, 187
BciT130I CCWGG 1 cut(s) 608
BcnI CCSGG 1 cut(s) 212
BcoDI GTCTC 3 cut(s) 89, 127, 151
BcuI ACTAGT 1 cut(s) 703
BfaI CTAG 4 cut(s) 306, 518, 704, 998
BfmI CTRYAG 1 cut(s) 872
BfoI RGCGCY 2 cut(s) 279, 936
BfuAI ACCTGC 1 cut(s) 361
BisI GCNGC 7 cut(s) 122, 369, 414, 522, 872, 875, 936
BlsI GCNGC 7 cut(s) 123, 370, 415, 523, 873, 876, 937
Bme1390I CCNGG 2 cut(s) 212, 608
Bme18I GGWCC 6 cut(s) 138, 234, 407, 468, 643, 963
BmeRI GACNNNNNGTC 1 cut(s) 405
BmgT120I GGNCC 7 cut(s) 138, 234, 407, 468, 506, 643, 963
BmiI GGNNCC 4 cut(s) 235, 531, 577, 964
BmrFI CCNGG 2 cut(s) 212, 608
BmsI GCATC 2 cut(s) 589, 871
BoxI GACNNNNGTC 1 cut(s) 143
BpiI GAAGAC 1 cut(s) 439
Bpu14I TTCGAA 1 cut(s) 667
BpuMI CCSGG 1 cut(s) 212
BsaJI CCNNGG 2 cut(s) 762, 975
BsaWI WCCGGW 2 cut(s) 470, 854
Bsc4I CCNNNNNNNGG 1 cut(s) 818
Bse118I RCCGGY 1 cut(s) 470
Bse1I ACTGG 1 cut(s) 1108
BseBI CCWGG 1 cut(s) 608
BseDI CCNNGG 2 cut(s) 762, 975
BseGI GGATG 3 cut(s) 23, 438, 593
BseLI CCNNNNNNNGG 1 cut(s) 818
BseNI ACTGG 1 cut(s) 1108
BseSI GKGCMC 2 cut(s) 680, 1035
BseXI GCAGC 6 cut(s) 108, 400, 508, 858, 886, 922
BsgI GTGCAG 1 cut(s) 888
Bsh1236I CGCG 1 cut(s) 239
BshFI GGCC 4 cut(s) 296, 508, 594, 606
BshTI ACCGGT 1 cut(s) 470
BsiHKAI GWGCWC 1 cut(s) 568
BsiSI CCGG 4 cut(s) 191, 211, 471, 855
BslFI GGGAC 3 cut(s) 238, 728, 976
BslI CCNNNNNNNGG 1 cut(s) 818
BsmAI GTCTC 3 cut(s) 89, 127, 151
BsmBI CGTCTC 3 cut(s) 89, 127, 151
BsmFI GGGAC 3 cut(s) 238, 728, 976
BsnI GGCC 4 cut(s) 296, 508, 594, 606
Bsp119I TTCGAA 1 cut(s) 667
Bsp1286I GDGCHC 4 cut(s) 568, 580, 680, 1035
Bsp143I GATC 2 cut(s) 264, 339
Bsp19I CCATGG 1 cut(s) 975
BspACI CCGC 4 cut(s) 141, 237, 368, 553
BspANI GGCC 4 cut(s) 296, 508, 594, 606
BspFNI CGCG 1 cut(s) 239
BspLI GGNNCC 4 cut(s) 235, 531, 577, 964
BspMAI CTGCAG 1 cut(s) 876
BspMI ACCTGC 1 cut(s) 361
BspPI GGATC 1 cut(s) 259
BspT104I TTCGAA 1 cut(s) 667
BsrFI RCCGGY 1 cut(s) 470
BsrI ACTGG 1 cut(s) 1108
BssAI RCCGGY 1 cut(s) 470
BssECI CCNNGG 2 cut(s) 762, 975
BssMI GATC 2 cut(s) 264, 339
BssSI CACGAG 1 cut(s) 921
BssT1I CCWWGG 2 cut(s) 762, 975
Bst2BI CACGAG 1 cut(s) 921
Bst2UI CCWGG 1 cut(s) 608
Bst4CI ACNGT 3 cut(s) 817, 967, 991
Bst6I CTCTTC 3 cut(s) 25, 64, 118
BstAPI GCANNNNNTGC 1 cut(s) 871
BstBI TTCGAA 1 cut(s) 667
BstC8I GCNNGC 4 cut(s) 491, 604, 903, 931
BstDEI CTNAG 5 cut(s) 282, 343, 396, 455, 955
BstDSI CCRYGG 1 cut(s) 975
BstF5I GGATG 3 cut(s) 23, 438, 593
BstFNI CGCG 1 cut(s) 239
BstH2I RGCGCY 2 cut(s) 279, 936
BstHHI GCGC 4 cut(s) 241, 278, 322, 935
BstKTI GATC 2 cut(s) 267, 342
BstMAI GTCTC 3 cut(s) 89, 127, 151
BstMBI GATC 2 cut(s) 264, 339
BstMWI GCNNNNNNNGC 9 cut(s) 317, 326, 368, 374, 419, 527, 848, 871, 935
BstNI CCWGG 1 cut(s) 608
BstPAI GACNNNNGTC 1 cut(s) 143
BstSCI CCNGG 2 cut(s) 210, 606
BstSFI CTRYAG 1 cut(s) 872
BstSLI GKGCMC 2 cut(s) 680, 1035
BstUI CGCG 1 cut(s) 239
BstV1I GCAGC 6 cut(s) 108, 400, 508, 858, 886, 922
BstV2I GAAGAC 1 cut(s) 439
BstX2I RGATCY 1 cut(s) 264
BstXI CCANNNNNNTGG 2 cut(s) 602, 1115
BstYI RGATCY 1 cut(s) 264
BsuRI GGCC 4 cut(s) 296, 508, 594, 606
BtgI CCRYGG 1 cut(s) 975
BtsCI GGATG 3 cut(s) 23, 438, 593
BveI ACCTGC 1 cut(s) 361
Cac8I GCNNGC 4 cut(s) 491, 604, 903, 931
CaiI CAGNNNCTG 2 cut(s) 416, 509
CfoI GCGC 4 cut(s) 241, 278, 322, 935
Cfr10I RCCGGY 1 cut(s) 470
Cfr13I GGNCC 7 cut(s) 138, 234, 407, 468, 506, 643, 963
CpoI CGGWCCG 1 cut(s) 138
Csp6I GTAC 3 cut(s) 347, 549, 793
CspAI ACCGGT 1 cut(s) 470
CspCI CAANNNNNGTGG 2 cut(s) 841, 876
CspI CGGWCCG 1 cut(s) 138
CviAII CATG 6 cut(s) 465, 596, 866, 976, 1005, 1056
CviQI GTAC 3 cut(s) 347, 549, 793
DdeI CTNAG 5 cut(s) 282, 343, 396, 455, 955
DpnI GATC 2 cut(s) 266, 341
DpnII GATC 2 cut(s) 264, 339
DrdI GACNNNNNNGTC 1 cut(s) 232
DriI GACNNNNNGTC 1 cut(s) 405
DseDI GACNNNNNNGTC 1 cut(s) 232
EaeI YGGCCR 2 cut(s) 592, 604
Eam1104I CTCTTC 3 cut(s) 25, 64, 118
Eam1105I GACNNNNNGTC 1 cut(s) 405
EarI CTCTTC 3 cut(s) 25, 64, 118
Eco130I CCWWGG 2 cut(s) 762, 975
Eco24I GRGCYC 1 cut(s) 580
Eco47I GGWCC 6 cut(s) 138, 234, 407, 468, 643, 963
Eco57I CTGAAG 2 cut(s) 659, 720
EcoO109I RGGNCCY 1 cut(s) 506
EcoRII CCWGG 1 cut(s) 606
EcoT14I CCWWGG 2 cut(s) 762, 975
EcoT22I ATGCAT 1 cut(s) 886
EcoT38I GRGCYC 1 cut(s) 580
ErhI CCWWGG 2 cut(s) 762, 975
Esp3I CGTCTC 3 cut(s) 89, 127, 151
FaeI CATG 6 cut(s) 468, 599, 869, 979, 1008, 1059
FaqI GGGAC 3 cut(s) 238, 728, 976
FatI CATG 6 cut(s) 464, 595, 865, 975, 1004, 1055
FauI CCCGC 1 cut(s) 560
Fnu4HI GCNGC 7 cut(s) 122, 369, 414, 522, 872, 875, 936
FokI GGATG 3 cut(s) 10, 425, 600
FriOI GRGCYC 1 cut(s) 580
Fsp4HI GCNGC 7 cut(s) 122, 369, 414, 522, 872, 875, 936
FspBI CTAG 4 cut(s) 306, 518, 704, 998
GlaI GCGC 4 cut(s) 240, 277, 321, 934
GluI GCNGC 7 cut(s) 122, 369, 414, 522, 872, 875, 936
HaeII RGCGCY 2 cut(s) 279, 936
HaeIII GGCC 4 cut(s) 296, 508, 594, 606
HapII CCGG 4 cut(s) 191, 211, 471, 855
HhaI GCGC 4 cut(s) 241, 278, 322, 935
Hin1II CATG 6 cut(s) 468, 599, 869, 979, 1008, 1059
Hin6I GCGC 4 cut(s) 239, 276, 320, 933
HinP1I GCGC 4 cut(s) 239, 276, 320, 933
HindIII AAGCTT 1 cut(s) 732
HinfI GANTC 1 cut(s) 435
HpaII CCGG 4 cut(s) 191, 211, 471, 855
HphI GGTGA 2 cut(s) 59, 292
Hpy188I TCNGA 2 cut(s) 264, 739
Hpy188III TCNNGA 3 cut(s) 86, 442, 803
Hpy99I CGWCG 1 cut(s) 208
HpyAV CCTTC 1 cut(s) 634
HpyCH4III ACNGT 3 cut(s) 817, 967, 991
HpyF10VI GCNNNNNNNGC 9 cut(s) 317, 326, 368, 374, 419, 527, 848, 871, 935
HpyF3I CTNAG 5 cut(s) 282, 343, 396, 455, 955
Hsp92II CATG 6 cut(s) 468, 599, 869, 979, 1008, 1059
HspAI GCGC 4 cut(s) 239, 276, 320, 933
Kzo9I GATC 2 cut(s) 264, 339
LmnI GCTCC 3 cut(s) 535, 575, 654
Lsp1109I GCAGC 6 cut(s) 108, 400, 508, 858, 886, 922
LweI GCATC 2 cut(s) 589, 871
MaeI CTAG 4 cut(s) 306, 518, 704, 998
MalI GATC 2 cut(s) 266, 341
MboI GATC 2 cut(s) 264, 339
MboII GAAGA 9 cut(s) 12, 51, 105, 177, 444, 835, 838, 841, 1056
MfeI CAATTG 1 cut(s) 540
MflI RGATCY 1 cut(s) 264
MhlI GDGCHC 4 cut(s) 568, 580, 680, 1035
MlsI TGGCCA 2 cut(s) 594, 606
MluCI AATT 4 cut(s) 103, 449, 540, 858
MluNI TGGCCA 2 cut(s) 594, 606
MlyI GAGTC 1 cut(s) 429
MmeI TCCRAC 1 cut(s) 553
MnlI CCTC 5 cut(s) 28, 67, 121, 187, 590
Mox20I TGGCCA 2 cut(s) 594, 606
Mph1103I ATGCAT 1 cut(s) 886
MroXI GAANNNNTTC 2 cut(s) 9, 663
MscI TGGCCA 2 cut(s) 594, 606
MseI TTAA 3 cut(s) 48, 726, 1019
Msp20I TGGCCA 2 cut(s) 594, 606
MspA1I CMGCKG 2 cut(s) 368, 413
MspI CCGG 4 cut(s) 191, 211, 471, 855
MspR9I CCNGG 2 cut(s) 212, 608
MunI CAATTG 1 cut(s) 540
MvaI CCWGG 1 cut(s) 608
MvnI CGCG 1 cut(s) 239
MwoI GCNNNNNNNGC 9 cut(s) 317, 326, 368, 374, 419, 527, 848, 871, 935
NciI CCSGG 1 cut(s) 212
NcoI CCATGG 1 cut(s) 975
NdeII GATC 2 cut(s) 264, 339
NlaIII CATG 6 cut(s) 468, 599, 869, 979, 1008, 1059
NlaIV GGNNCC 4 cut(s) 235, 531, 577, 964
NsiI ATGCAT 1 cut(s) 886
NspV TTCGAA 1 cut(s) 667
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PdmI GAANNNNTTC 2 cut(s) 9, 663
PflMI CCANNNNNTGG 1 cut(s) 818
PinAI ACCGGT 1 cut(s) 470
PkrI GCNGC 7 cut(s) 123, 370, 415, 523, 873, 876, 937
PleI GAGTC 1 cut(s) 429
PpsI GAGTC 1 cut(s) 429
PshAI GACNNNNGTC 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 606
PspGI CCWGG 1 cut(s) 606
PspN4I GGNNCC 4 cut(s) 235, 531, 577, 964
PspPI GGNCC 7 cut(s) 138, 234, 407, 468, 506, 643, 963
PstI CTGCAG 1 cut(s) 876
PstNI CAGNNNCTG 2 cut(s) 416, 509
PsuI RGATCY 1 cut(s) 264
PvuII CAGCTG 1 cut(s) 413
RsaI GTAC 3 cut(s) 348, 550, 794
RsaNI GTAC 3 cut(s) 347, 549, 793
Rsr2I CGGWCCG 1 cut(s) 138
RsrII CGGWCCG 1 cut(s) 138
SaqAI TTAA 3 cut(s) 48, 726, 1019
SatI GCNGC 7 cut(s) 122, 369, 414, 522, 872, 875, 936
Sau3AI GATC 2 cut(s) 264, 339
Sau96I GGNCC 7 cut(s) 138, 234, 407, 468, 506, 643, 963
SchI GAGTC 1 cut(s) 429
ScrFI CCNGG 2 cut(s) 212, 608
SduI GDGCHC 4 cut(s) 568, 580, 680, 1035
SfaNI GCATC 2 cut(s) 589, 871
SfcI CTRYAG 1 cut(s) 872
SfuI TTCGAA 1 cut(s) 667
SinI GGWCC 6 cut(s) 138, 234, 407, 468, 643, 963
SpeI ACTAGT 1 cut(s) 703
Sse9I AATT 4 cut(s) 103, 449, 540, 858
SsiI CCGC 4 cut(s) 141, 237, 368, 553
SspMI CTAG 4 cut(s) 306, 518, 704, 998
StyD4I CCNGG 2 cut(s) 210, 606
StyI CCWWGG 2 cut(s) 762, 975
TaaI ACNGT 3 cut(s) 817, 967, 991
TaqI TCGA 3 cut(s) 87, 206, 667
TasI AATT 4 cut(s) 103, 449, 540, 858
TatI WGTACW 1 cut(s) 346
TauI GCSGC 1 cut(s) 371
Tru1I TTAA 3 cut(s) 48, 726, 1019
Tru9I TTAA 3 cut(s) 48, 726, 1019
TseI GCWGC 6 cut(s) 121, 413, 521, 871, 874, 935
TspDTI ATGAA 1 cut(s) 12
TspGWI ACGGA 1 cut(s) 151
Van91I CCANNNNNTGG 1 cut(s) 818
VpaK11BI GGWCC 6 cut(s) 138, 234, 407, 468, 643, 963
XcmI CCANNNNNNNNNTGG 1 cut(s) 614
XmnI GAANNNNTTC 2 cut(s) 9, 663
XspI CTAG 4 cut(s) 306, 518, 704, 998
Zsp2I ATGCAT 1 cut(s) 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.