FvH4_5g30840
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
21703374 .. 21709644
6271 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g30840.t2

Sequence Viewer

Length: 1842 bp
ATGGAGTTCTCGGCGACCGAGGCTCGGCGGATTCTACTAGTCTTGGGGTTTCTTCTTCAAATTTCCAAGCTCTCCGCCAACGTCGAAGGTGACGCATTGAACGCTTTGAAGAGCAGCTTGGCTGATCCTAACAATGTGCTGCAGAGCTGGGATCCTACTCTCGTCAATCCCTGTACTTGGTTCCATGTCACCTGCAATAGCGAAAACAGCGTTACCAGGGTTGATCTTGGCAATGCTAATCTCTCCGGTGGCCTGGTGACACAGCTCGGCGTGCTTACTAATTTACAGTACTTGGAGCTGTATAGTAATAATATAACTGGACCTATTCCAGACGAGCTTGGCAGTTTGCAAAACTTGGTGAGCTTGGATCTTTACTTGAACAGTTTAGATGGTGACATTCCGGCCACACTTGGCAGCCTTGAAAAGCTGCGTTTCCTGCGTCTGAACAACAATTCCTTGACTGGGAAAATTCCCGTTACGCTGACTAAGATAGCATCATTGCAAGTCCTGGATCTTTCAAACAACAATCTGACTGGAGATATTCCGGTCAATGGTTCCTTTTCACTTTTTACTCCTATCAGTTTTACCAATAATCCCTTGCTAGAGCCTCTTCCAGCTACTCCACCTCCTTCTGTTACTCCCCCGCCAAGTTCTATTTCAGGTAATAGCCGTACCGGGGCTATTGCTGGAGGAGTTGCTGCTGGTGCTGCTTTGCTGTTTGCTGCACCTGCAATTGCACTTGCTTGGTGGCGACGAAGAAAACCACAGGACCATTTCTTTGATGTACCTGCTGAGGAGGACCCTGAAGTTCATTTGGGCCAGCTCAAAAGGTTTTCTTTACGGGAGCTACAAGTTGCAACAGATACCTTTAGCAATAGACATATTCTAGGTAGAGGTGGATTTGGTAAGGTTTATAAAGGGCGTTTAGCTGATGGTTCTCTGGTGGCTGTTAAAAGACTTAAAGAAGAGAGAACCCAAGGTGGGGAGCTACAGTTCCAAACAGAAGTAGAAATGATTAGCATGGCAGTGCACCGAAATCTGCTTCGTCTGAAAGGTTTTTGCATGACACCCACAGAAAGGCTGCTTGTATATCCATATATGTCTAATGGAAGTGTAGCATCTTGTTTAAGAGAGCGTCCGGAATCACAACCTCCACTTGATTGGCAAAAGAGGAAACGAATTGCATTGGGATCTGCTAGGGGCCTTGCATATTTGCATGATCACTGTGATCCGAAAATTATTCACCGTGATGTAAAAGCTGCAAACATTTTGTTGGACGAGGAATTTGAAGCAGTTGTTGGAGATTTTGGGTTAGCTAAACTCATGGATTACAAGGACACACATGTCACTACAGCTGTACGTGGTACGATTGGACATATAGCACCAGAGTATCTCTCAACTGGAAAGTCTTCAGAGAAAACTGACGTTTTTGGATATGGAGTCATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTTGATCTTGCTCGGCTTGCAAATGACGATGATGTCATGTTACTTGATTGGGTAAAAGGTCTGTTGAAAGATCGAAGGTTAGAAGCACTTGTGGATGCTGATTTACAAGGTAATTATATTGACGAGGAGGTAGAGCAGCTGATCCAAGTTGCTCTACTCTGCACGTCAGGCTCCCCCGGAGAAAGGCCCAAGATGTCAGAGGTTGTTAGAATGCTTGAAGGTGATGGTTTAGCTGAAAGATGGGAGGAATGGCAAAAAGAGGAGATGTTCCGTCAAGACTACAACCCTATTCACCATCCAAGTACTAACTGGATCATCGACTCAACTTCTCATATTCCCCCTGACGAGTTATCAGGTCCCCGATGA

Protein Analysis

614

Amino Acids

67.59

Weight (kDa)

5.33

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 27 - 66 3.6e-12 Leucine rich repeat N-terminal domain
LRR_14 PF23598 82 - 174 1.3e-10 Leucine-rich repeat region
LRR_8 PF13855 118 - 177 3.1e-06 Leucine rich repeat
LRR_4 PF12799 142 - 182 1.9e-06 Leucine Rich repeats (2 copies)
Pkinase PF00069 291 - 494 5.4e-43 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 294 - 492 7.3e-42 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 915
AarI CACCTGC 2 cut(s) 200, 736
AasI GACNNNNNNGTC 2 cut(s) 1343, 1508
Acc36I ACCTGC 3 cut(s) 200, 736, 796
AccIII TCCGGA 1 cut(s) 1138
AciI CCGC 3 cut(s) 28, 75, 644
AclWI GGATC 9 cut(s) 119, 146, 159, 375, 519, 1198, 1223, 1612, 1796
AcoI YGGCCR 1 cut(s) 402
AcsI RAATTY 3 cut(s) 60, 468, 1283
AcuI CTGAAG 2 cut(s) 825, 1395
AfaI GTAC 7 cut(s) 175, 290, 673, 786, 1359, 1366, 1780
AfiI CCNNNNNNNGG 9 cut(s) 24, 177, 462, 551, 676, 981, 982, 1077, 1659
AflIII ACRYGT 1 cut(s) 1342
AhlI ACTAGT 1 cut(s) 37
AjiI CACGTC 1 cut(s) 1641
AjnI CCWGG 3 cut(s) 215, 252, 507
AjuI GAANNNNNNNTTGG 6 cut(s) 101, 133, 640, 672, 1281, 1313
AloI GAACNNNNNNTCC 4 cut(s) 437, 469, 977, 1009
Alw21I GWGCWC 1 cut(s) 1032
Alw44I GTGCAC 1 cut(s) 1028
AlwI GGATC 9 cut(s) 119, 146, 159, 375, 519, 1198, 1223, 1612, 1796
Aor13HI TCCGGA 1 cut(s) 1138
AoxI GGCC 5 cut(s) 250, 402, 817, 1201, 1661
ApaLI GTGCAC 1 cut(s) 1028
ApoI RAATTY 3 cut(s) 60, 468, 1283
ArsI GACNNNNNNTTYG 4 cut(s) 761, 793, 1268, 1300
Asp700I GAANNNNTTC 1 cut(s) 1408
AspS9I GGNCC 7 cut(s) 320, 769, 799, 817, 1201, 1662, 1832
AsuC2I CCSGG 2 cut(s) 676, 1653
AsuHPI GGTGA 8 cut(s) 101, 181, 268, 370, 404, 1235, 1709, 1760
AvaII GGWCC 4 cut(s) 320, 769, 799, 1832
BaeGI GKGCMC 1 cut(s) 1032
BaeI ACNNNNGTAYC 2 cut(s) 1373, 1406
BamHI GGATCC 1 cut(s) 151
BbsI GAAGAC 1 cut(s) 1401
Bbv12I GWGCWC 1 cut(s) 1032
BbvCI CCTCAGC 1 cut(s) 792
BccI CCATC 5 cut(s) 383, 926, 1694, 1710, 1779
BceAI ACGGC 1 cut(s) 654
BciT130I CCWGG 3 cut(s) 217, 254, 509
BclI TGATCA 1 cut(s) 1219
BcnI CCSGG 2 cut(s) 676, 1653
BcuI ACTAGT 1 cut(s) 37
BfaI CTAG 4 cut(s) 38, 602, 887, 1197
BfmI CTRYAG 3 cut(s) 140, 989, 1350
BfuAI ACCTGC 3 cut(s) 200, 736, 796
BmcAI AGTACT 2 cut(s) 290, 1780
Bme1390I CCNGG 5 cut(s) 217, 254, 509, 676, 1653
Bme18I GGWCC 4 cut(s) 320, 769, 799, 1832
BmgBI CACGTC 1 cut(s) 1641
BmgT120I GGNCC 7 cut(s) 320, 769, 799, 817, 1201, 1662, 1832
BmiI GGNNCC 7 cut(s) 153, 182, 556, 801, 1202, 1648, 1834
BmrFI CCNGG 5 cut(s) 217, 254, 509, 676, 1653
BmrI ACTGGG 1 cut(s) 471
BmsI GCATC 3 cut(s) 503, 1127, 1561
BmuI ACTGGG 1 cut(s) 471
BpiI GAAGAC 1 cut(s) 1401
BplI GAGNNNNNCTC 2 cut(s) 1379, 1411
BpmI CTGGAG 2 cut(s) 555, 708
Bpu10I CCTNAGC 1 cut(s) 792
BpuMI CCSGG 2 cut(s) 676, 1653
BsaAI YACGTR 1 cut(s) 1361
BsaJI CCNNGG 5 cut(s) 18, 216, 675, 976, 1651
BsaWI WCCGGW 3 cut(s) 245, 544, 1138
BsaXI ACNNNNNCTCC 4 cut(s) 610, 640, 977, 1007
Bsc4I CCNNNNNNNGG 9 cut(s) 24, 177, 462, 551, 676, 981, 982, 1077, 1659
Bse1I ACTGG 6 cut(s) 322, 466, 538, 1405, 1468, 1790
Bse3DI GCAATG 2 cut(s) 238, 497
BseAI TCCGGA 1 cut(s) 1138
BseBI CCWGG 3 cut(s) 217, 254, 509
BseDI CCNNGG 5 cut(s) 18, 216, 675, 976, 1651
BseGI GGATG 2 cut(s) 1576, 1771
BseLI CCNNNNNNNGG 9 cut(s) 24, 177, 462, 551, 676, 981, 982, 1077, 1659
BseMI GCAATG 2 cut(s) 238, 497
BseMII CTCAG 1 cut(s) 783
BseNI ACTGG 6 cut(s) 322, 466, 538, 1405, 1468, 1790
BseRI GAGGAG 4 cut(s) 705, 809, 1616, 1751
BseSI GKGCMC 1 cut(s) 1032
BseYI CCCAGC 1 cut(s) 147
BsgI GTGCAG 2 cut(s) 708, 1621
Bsh1285I CGRYCG 1 cut(s) 18
BshFI GGCC 5 cut(s) 252, 404, 819, 1203, 1663
BsiEI CGRYCG 1 cut(s) 18
BsiHKAI GWGCWC 1 cut(s) 1032
BsiSI CCGG 6 cut(s) 246, 401, 545, 675, 1139, 1653
BslFI GGGAC 1 cut(s) 1818
BslI CCNNNNNNNGG 9 cut(s) 24, 177, 462, 551, 676, 981, 982, 1077, 1659
BsmFI GGGAC 1 cut(s) 1818
BsmI GAATGC 1 cut(s) 1692
BsnI GGCC 5 cut(s) 252, 404, 819, 1203, 1663
Bsp1286I GDGCHC 1 cut(s) 1032
Bsp13I TCCGGA 1 cut(s) 1138
BspACI CCGC 3 cut(s) 28, 75, 644
BspANI GGCC 5 cut(s) 252, 404, 819, 1203, 1663
BspCNI CTCAG 1 cut(s) 784
BspEI TCCGGA 1 cut(s) 1138
BspLI GGNNCC 7 cut(s) 153, 182, 556, 801, 1202, 1648, 1834
BspMAI CTGCAG 1 cut(s) 144
BspMI ACCTGC 3 cut(s) 200, 736, 796
BspPI GGATC 9 cut(s) 119, 146, 159, 375, 519, 1198, 1223, 1612, 1796
BspQI GCTCTTC 1 cut(s) 104
BsrDI GCAATG 2 cut(s) 238, 497
BsrI ACTGG 6 cut(s) 322, 466, 538, 1405, 1468, 1790
BssECI CCNNGG 5 cut(s) 18, 216, 675, 976, 1651
BssT1I CCWWGG 1 cut(s) 976
Bst2UI CCWGG 3 cut(s) 217, 254, 509
Bst4CI ACNGT 5 cut(s) 288, 383, 993, 1226, 1247
Bst6I CTCTTC 3 cut(s) 104, 615, 960
BstBAI YACGTR 1 cut(s) 1361
BstC8I GCNNGC 3 cut(s) 272, 821, 1494
BstDEI CTNAG 2 cut(s) 486, 792
BstF5I GGATG 2 cut(s) 1576, 1771
BstMCI CGRYCG 1 cut(s) 18
BstNI CCWGG 3 cut(s) 217, 254, 509
BstNSI RCATGY 1 cut(s) 1346
BstSCI CCNGG 5 cut(s) 215, 252, 507, 674, 1651
BstSFI CTRYAG 3 cut(s) 140, 989, 1350
BstSLI GKGCMC 1 cut(s) 1032
BstV2I GAAGAC 1 cut(s) 1401
BstX2I RGATCY 4 cut(s) 151, 367, 511, 1190
BstXI CCANNNNNNTGG 1 cut(s) 1161
BstYI RGATCY 4 cut(s) 151, 367, 511, 1190
BsuRI GGCC 5 cut(s) 252, 404, 819, 1203, 1663
BtrI CACGTC 1 cut(s) 1641
BtsCI GGATG 2 cut(s) 1576, 1771
BtsI GCAGTG 1 cut(s) 1032
BtsIMutI CAGTG 2 cut(s) 1032, 1222
BveI ACCTGC 3 cut(s) 200, 736, 796
Cac8I GCNNGC 3 cut(s) 272, 821, 1494
Cfr13I GGNCC 7 cut(s) 320, 769, 799, 817, 1201, 1662, 1832
CseI GACGC 3 cut(s) 101, 428, 1124
Csp6I GTAC 7 cut(s) 174, 289, 672, 785, 1358, 1365, 1779
CviAII CATG 8 cut(s) 185, 1021, 1063, 1217, 1324, 1343, 1444, 1513
CviQI GTAC 7 cut(s) 174, 289, 672, 785, 1358, 1365, 1779
DdeI CTNAG 2 cut(s) 486, 792
DrdI GACNNNNNNGTC 2 cut(s) 1343, 1508
DseDI GACNNNNNNGTC 2 cut(s) 1343, 1508
EaeI YGGCCR 1 cut(s) 402
Eam1104I CTCTTC 3 cut(s) 104, 615, 960
EarI CTCTTC 3 cut(s) 104, 615, 960
EciI GGCGGA 2 cut(s) 43, 64
Eco130I CCWWGG 1 cut(s) 976
Eco47I GGWCC 4 cut(s) 320, 769, 799, 1832
Eco57I CTGAAG 2 cut(s) 825, 1395
EcoO109I RGGNCCY 3 cut(s) 799, 1201, 1832
EcoRII CCWGG 3 cut(s) 215, 252, 507
EcoT14I CCWWGG 1 cut(s) 976
ErhI CCWWGG 1 cut(s) 976
FaeI CATG 8 cut(s) 188, 1024, 1066, 1220, 1327, 1346, 1447, 1516
FalI AAGNNNNNCTT 4 cut(s) 101, 133, 820, 852
FaqI GGGAC 1 cut(s) 1818
FatI CATG 8 cut(s) 184, 1020, 1062, 1216, 1323, 1342, 1443, 1512
FauI CCCGC 1 cut(s) 651
FbaI TGATCA 1 cut(s) 1219
FokI GGATG 2 cut(s) 1583, 1758
FspBI CTAG 4 cut(s) 38, 602, 887, 1197
GsaI CCCAGC 1 cut(s) 151
GsuI CTGGAG 2 cut(s) 555, 708
HaeIII GGCC 5 cut(s) 252, 404, 819, 1203, 1663
HapII CCGG 6 cut(s) 246, 401, 545, 675, 1139, 1653
HgaI GACGC 3 cut(s) 101, 428, 1124
Hin1II CATG 8 cut(s) 188, 1024, 1066, 1220, 1327, 1346, 1447, 1516
HinfI GANTC 4 cut(s) 31, 1142, 1440, 1796
HpaII CCGG 6 cut(s) 246, 401, 545, 675, 1139, 1653
HphI GGTGA 8 cut(s) 101, 181, 268, 370, 404, 1235, 1709, 1760
Hpy166II GTNNAC 1 cut(s) 1030
Hpy188I TCNGA 6 cut(s) 444, 531, 1050, 1233, 1414, 1675
Hpy188III TCNNGA 4 cut(s) 329, 1139, 1451, 1751
Hpy8I GTNNAC 1 cut(s) 1030
Hpy99I CGWCG 2 cut(s) 86, 756
HpyAV CCTTC 4 cut(s) 80, 639, 1545, 1688
HpyCH4III ACNGT 5 cut(s) 288, 383, 993, 1226, 1247
HpyCH4IV ACGT 4 cut(s) 81, 1360, 1425, 1640
HpyF3I CTNAG 2 cut(s) 486, 792
HpySE526I ACGT 4 cut(s) 81, 1360, 1425, 1640
Hsp92II CATG 8 cut(s) 188, 1024, 1066, 1220, 1327, 1346, 1447, 1516
Kpn2I TCCGGA 1 cut(s) 1138
Ksp22I TGATCA 1 cut(s) 1219
LguI GCTCTTC 1 cut(s) 104
LmnI GCTCC 4 cut(s) 295, 844, 985, 1652
LweI GCATC 3 cut(s) 503, 1127, 1561
MaeI CTAG 4 cut(s) 38, 602, 887, 1197
MaeII ACGT 4 cut(s) 81, 1360, 1425, 1640
MaeIII GTNAC 9 cut(s) 89, 187, 211, 256, 392, 475, 634, 1345, 1515
MboII GAAGA 7 cut(s) 44, 47, 121, 602, 768, 977, 1401
MfeI CAATTG 1 cut(s) 732
MflI RGATCY 4 cut(s) 151, 367, 511, 1190
MhlI GDGCHC 1 cut(s) 1032
MluCI AATT 9 cut(s) 60, 280, 451, 468, 732, 1179, 1236, 1283, 1588
MlyI GAGTC 2 cut(s) 1449, 1790
MmeI TCCRAC 2 cut(s) 1254, 1279
MroI TCCGGA 1 cut(s) 1138
MroXI GAANNNNTTC 1 cut(s) 1408
MseI TTAA 3 cut(s) 951, 960, 1127
MslI CAYNNNNRTG 2 cut(s) 1025, 1248
MspA1I CMGCKG 2 cut(s) 1355, 1615
MspI CCGG 6 cut(s) 246, 401, 545, 675, 1139, 1653
MspR9I CCNGG 5 cut(s) 217, 254, 509, 676, 1653
MunI CAATTG 1 cut(s) 732
Mva1269I GAATGC 1 cut(s) 1692
MvaI CCWGG 3 cut(s) 217, 254, 509
NciI CCSGG 2 cut(s) 676, 1653
NlaIII CATG 8 cut(s) 188, 1024, 1066, 1220, 1327, 1346, 1447, 1516
NlaIV GGNNCC 7 cut(s) 153, 182, 556, 801, 1202, 1648, 1834
NmeAIII GCCGAG 3 cut(s) 4, 246, 1468
NmuCI GTSAC 5 cut(s) 89, 187, 256, 392, 1345
NspI RCATGY 1 cut(s) 1346
PaqCI CACCTGC 2 cut(s) 200, 736
PciI ACATGT 1 cut(s) 1342
PciSI GCTCTTC 1 cut(s) 104
PctI GAATGC 1 cut(s) 1692
PdmI GAANNNNTTC 1 cut(s) 1408
PfeI GAWTC 2 cut(s) 31, 1142
PfoI TCCNGGA 1 cut(s) 507
PleI GAGTC 2 cut(s) 1448, 1790
PpsI GAGTC 2 cut(s) 1448, 1790
Ppu21I YACGTR 1 cut(s) 1361
PpuMI RGGWCCY 2 cut(s) 799, 1832
PscI ACATGT 1 cut(s) 1342
PsiI TTATAA 1 cut(s) 915
Psp5II RGGWCCY 2 cut(s) 799, 1832
Psp6I CCWGG 3 cut(s) 215, 252, 507
PspFI CCCAGC 1 cut(s) 147
PspGI CCWGG 3 cut(s) 215, 252, 507
PspN4I GGNNCC 7 cut(s) 153, 182, 556, 801, 1202, 1648, 1834
PspPI GGNCC 7 cut(s) 320, 769, 799, 817, 1201, 1662, 1832
PspPPI RGGWCCY 2 cut(s) 799, 1832
PstI CTGCAG 1 cut(s) 144
PsuI RGATCY 4 cut(s) 151, 367, 511, 1190
PvuII CAGCTG 2 cut(s) 1355, 1615
RsaI GTAC 7 cut(s) 175, 290, 673, 786, 1359, 1366, 1780
RsaNI GTAC 7 cut(s) 174, 289, 672, 785, 1358, 1365, 1779
RseI CAYNNNNRTG 2 cut(s) 1025, 1248
SapI GCTCTTC 1 cut(s) 104
SaqAI TTAA 3 cut(s) 951, 960, 1127
Sau96I GGNCC 7 cut(s) 320, 769, 799, 817, 1201, 1662, 1832
ScaI AGTACT 2 cut(s) 290, 1780
SchI GAGTC 2 cut(s) 1449, 1790
ScrFI CCNGG 5 cut(s) 217, 254, 509, 676, 1653
SduI GDGCHC 1 cut(s) 1032
SfaNI GCATC 3 cut(s) 503, 1127, 1561
SfcI CTRYAG 3 cut(s) 140, 989, 1350
SinI GGWCC 4 cut(s) 320, 769, 799, 1832
SmiMI CAYNNNNRTG 2 cut(s) 1025, 1248
SpeI ACTAGT 1 cut(s) 37
Sse9I AATT 9 cut(s) 60, 280, 451, 468, 732, 1179, 1236, 1283, 1588
SsiI CCGC 3 cut(s) 28, 75, 644
SspMI CTAG 4 cut(s) 38, 602, 887, 1197
StyD4I CCNGG 5 cut(s) 215, 252, 507, 674, 1651
StyI CCWWGG 1 cut(s) 976
TaaI ACNGT 5 cut(s) 288, 383, 993, 1226, 1247
TaiI ACGT 4 cut(s) 84, 1363, 1428, 1643
TaqI TCGA 3 cut(s) 84, 1549, 1794
TaqII GACCGA 1 cut(s) 32
TasI AATT 9 cut(s) 60, 280, 451, 468, 732, 1179, 1236, 1283, 1588
TatI WGTACW 3 cut(s) 173, 288, 1778
TfiI GAWTC 2 cut(s) 31, 1142
Tru1I TTAA 3 cut(s) 951, 960, 1127
Tru9I TTAA 3 cut(s) 951, 960, 1127
TscAI CASTG 2 cut(s) 1032, 1229
TseFI GTSAC 5 cut(s) 89, 187, 256, 392, 1345
Tsp45I GTSAC 5 cut(s) 89, 187, 256, 392, 1345
TspDTI ATGAA 1 cut(s) 800
TspGWI ACGGA 1 cut(s) 1736
TspRI CASTG 2 cut(s) 1032, 1229
VneI GTGCAC 1 cut(s) 1028
VpaK11BI GGWCC 4 cut(s) 320, 769, 799, 1832
XapI RAATTY 3 cut(s) 60, 468, 1283
XceI RCATGY 1 cut(s) 1346
XcmI CCANNNNNNNNNTGG 1 cut(s) 1782
XmnI GAANNNNTTC 1 cut(s) 1408
XspI CTAG 4 cut(s) 38, 602, 887, 1197
ZrmI AGTACT 2 cut(s) 290, 1780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.