Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002092.1

Orthogroup ID

OG0003522

Physical Location & Seq

Genomic Coordinates Forward (+)

24866 .. 28030

Gene Structure 3165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002092.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

atgctcagtataaagaaggaaaagcgtctcaacaacaataccttgacgggggaaattcccagaacgctgactaatattgcatcattgcaagtcctggatctttcaaacaacaatcttactggagatattccgatcaatggttccttttcactctttactcccatcagttttgccaataatcctcgtctgaataaacttccagatgttccatctcctcctgtttctccaagcccaagtcctatttcaggtaacagccgtactggggctattgctggaggggttgctgctggtgctgctttgctgtttgctgcccctgcaattgcacttgcttggtggcgacgaagaaaaccacaggatcatttctttgatgtacctgctgaggaggatcctgaagttcatttaggacagctcaaaaggttttctttacgtgagctacaagttgcaacagatacctttagcaatagacatattctaggtagaggtggatttggtaaggtttataaagggcgtttagctgatggttctctggtggctgtaaaaagacttaaagaggagagaacccaaggtggggagctacagttccaaacagaagtagaaatgattagcatggctgtgcatcgaaatctgcttcgtctgcgtggtttttgcatgacaccaacagaaaggctgctcgtatatccatatatgtctaatggaagtgtagcatcatgtttaagagagcgtccggaatcacatcctccacttgattggcaaaagaggaaacgcattgcattgggatctgcaaggggccttgcttatttgcatgatcactgtgatccgaaaattattcaccgtgatgtaaaagctgcaaacattttgttggatgaggaatatgaagcagttgttggagattttgggttagctaaactcatggattacaaggatacacacgtcaccacagccgtacgtggtacgattggacatatagcaccagagtatctctcaactggaaagtcttcagagaaaactgacgtttttggatatggagtcatgcttcttgaactaataactgggcagagggcttttgatcttgctcgacttgcgaatgatgatgatgtcatgttacttgattgggtaaaaggtctgttgaaagatcgaaggttggaagcacttgtcgatgctgatttacagggtaattatattgacgaggaggtagagcagctgatccaagttgctctactctgcacatcaggctcccccggagaaaggcccaaaatgtcagaggttgttagaatgcttgaaggtgatggtttagctgaaagatgggaggaatggcagaaagaggagatgttccgtcaagactataaccctgttcaccatccaagtactaattggatcatcgactcaacttctcatattccccccgacgagttgtcaggtccccgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0008219 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010008 GO:0010033 GO:0010200 GO:0010243 GO:0010941 GO:0012505 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031090 GO:0031410 GO:0031982 GO:0032870 GO:0033612 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048545 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0060089 GO:0060548 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0140096 GO:1900140 GO:1901564 GO:1901698 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

475

Amino Acids

52.92

Weight (kDa)

6.05

Isoelectric Point (pI)

48.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13790 AT2G13800 AT2G13800 AT2G13800 AT2G13800 AT4G33430 AT4G33430
fragaria_vesca	FvH4_5g30840 FvH4_5g30840
malus_domestica	MD08G1221700.v1.1 MD15G1412700.v1.1 MD15G1413000.v1.1 MD15G1413200.v1.1 MD15G1413300.v1.1 MD15G1414000.v1.1
prunus_persica	Prupe.1G558800_v2.0.a1 Prupe.1G558900_v2.0.a1 Prupe.1G558900_v2.0.a1 Prupe.1G558900_v2.0.a1
pyrus_communis	pycom08g19230 pycom15g36730 pycom15g36740 pycom15g36780 pycom15g36820
rosa_chinensis	RchiOBHm_Chr7g0225981
rosa_laevigata	RLG00000001775
rosa_multiflora	Rmu_sc0002092.1_g000002 Rmu_sc0014767.1_g000001
rosa_roxburghii	Rroxscaffold_3G00233340
rosa_rugosa	Rorug07G0233900
rosa_samantha	Rh7AG369400 Rh7BG367900 Rh7CG387800 Rh7DG378900
rosa_wichuraiana	Rw0G020960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	501
Acc36I	ACCTGC	1 cut(s)	382
AccIII	TCCGGA	1 cut(s)	724
AclWI	GGATC	8 cut(s)	105, 363, 380, 393, 784, 809, 1198, 1382
AcsI	RAATTY	1 cut(s)	54
AcuI	CTGAAG	2 cut(s)	411, 981
AfaI	GTAC	5 cut(s)	259, 372, 945, 952, 1366
AfiI	CCNNNNNNNGG	7 cut(s)	48, 137, 245, 262, 567, 568, 1245
AflIII	ACRYGT	1 cut(s)	928
AgsI	TTSAA	4 cut(s)	105, 1040, 1129, 1280
AhdI	GACNNNNNGTC	1 cut(s)	1411
AjiI	CACGTC	1 cut(s)	931
AjnI	CCWGG	1 cut(s)	93
AjuI	GAANNNNNNNTTGG	4 cut(s)	226, 258, 867, 899
AloI	GAACNNNNNNTCC	2 cut(s)	563, 595
AluBI	AGCT	8 cut(s)	409, 433, 515, 574, 845, 902, 1201, 1295
AluI	AGCT	8 cut(s)	409, 433, 515, 574, 845, 902, 1201, 1295
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	8 cut(s)	105, 363, 380, 393, 784, 809, 1198, 1382
Aor13HI	TCCGGA	1 cut(s)	724
AoxI	GGCC	2 cut(s)	787, 1247
ApeKI	GCWGC	6 cut(s)	284, 293, 308, 667, 845, 1198
ApoI	RAATTY	1 cut(s)	54
Asp700I	GAANNNNTTC	1 cut(s)	994
AspS9I	GGNCC	3 cut(s)	787, 1248, 1418
AsuC2I	CCSGG	1 cut(s)	1239
AsuHPI	GGTGA	4 cut(s)	821, 925, 1295, 1346
AvaII	GGWCC	1 cut(s)	1418
BaeI	ACNNNNGTAYC	4 cut(s)	915, 948, 959, 992
BamHI	GGATCC	1 cut(s)	385
BbsI	GAAGAC	1 cut(s)	987
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	6 cut(s)	271, 280, 295, 654, 832, 1210
BccI	CCATC	6 cut(s)	170, 217, 512, 1280, 1296, 1365
BceAI	ACGGC	2 cut(s)	240, 926
BciT130I	CCWGG	1 cut(s)	95
BciVI	GTATCC	1 cut(s)	916
BclI	TGATCA	1 cut(s)	805
BcnI	CCSGG	1 cut(s)	1239
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	1 cut(s)	473
BfmI	CTRYAG	1 cut(s)	575
BfuAI	ACCTGC	1 cut(s)	382
BfuI	GTATCC	1 cut(s)	916
BisI	GCNGC	6 cut(s)	285, 294, 309, 668, 846, 1199
BlsI	GCNGC	6 cut(s)	286, 295, 310, 669, 847, 1200
BmcAI	AGTACT	1 cut(s)	1366
Bme1390I	CCNGG	2 cut(s)	95, 1239
Bme18I	GGWCC	1 cut(s)	1418
BmeRI	GACNNNNNGTC	1 cut(s)	1411
BmgBI	CACGTC	1 cut(s)	931
BmgT120I	GGNCC	3 cut(s)	787, 1248, 1418
BmiI	GGNNCC	5 cut(s)	142, 387, 788, 1234, 1420
BmrFI	CCNGG	2 cut(s)	95, 1239
BmrI	ACTGGG	2 cut(s)	270, 1059
BmsI	GCATC	4 cut(s)	89, 625, 713, 1147
BmuI	ACTGGG	2 cut(s)	270, 1059
BpiI	GAAGAC	1 cut(s)	987
BplI	GAGNNNNNCTC	2 cut(s)	965, 997
BpmI	CTGGAG	2 cut(s)	141, 294
Bpu10I	CCTNAGC	1 cut(s)	378
BpuMI	CCSGG	1 cut(s)	1239
BsaAI	YACGTR	2 cut(s)	428, 947
BsaJI	CCNNGG	2 cut(s)	562, 1237
BsaWI	WCCGGW	1 cut(s)	724
BsaXI	ACNNNNNCTCC	2 cut(s)	563, 593
Bsc4I	CCNNNNNNNGG	7 cut(s)	48, 137, 245, 262, 567, 568, 1245
Bse1I	ACTGG	4 cut(s)	124, 265, 991, 1054
Bse3DI	GCAATG	2 cut(s)	83, 765
BseAI	TCCGGA	1 cut(s)	724
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	2 cut(s)	562, 1237
BseGI	GGATG	3 cut(s)	733, 868, 1357
BseLI	CCNNNNNNNGG	7 cut(s)	48, 137, 245, 262, 567, 568, 1245
BseMI	GCAATG	2 cut(s)	83, 765
BseMII	CTCAG	2 cut(s)	19, 369
BseNI	ACTGG	4 cut(s)	124, 265, 991, 1054
BseRI	GAGGAG	5 cut(s)	204, 395, 566, 1202, 1337
BseXI	GCAGC	6 cut(s)	271, 280, 295, 654, 832, 1210
BsgI	GTGCAG	1 cut(s)	1207
BshFI	GGCC	2 cut(s)	789, 1249
BsiSI	CCGG	2 cut(s)	725, 1239
BsiWI	CGTACG	1 cut(s)	943
BslFI	GGGAC	1 cut(s)	1404
BslI	CCNNNNNNNGG	7 cut(s)	48, 137, 245, 262, 567, 568, 1245
BsmAI	GTCTC	1 cut(s)	32
BsmBI	CGTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	1404
BsmI	GAATGC	1 cut(s)	1278
BsnI	GGCC	2 cut(s)	789, 1249
Bsp13I	TCCGGA	1 cut(s)	724
BspANI	GGCC	2 cut(s)	789, 1249
BspCNI	CTCAG	2 cut(s)	18, 370
BspEI	TCCGGA	1 cut(s)	724
BspLI	GGNNCC	5 cut(s)	142, 387, 788, 1234, 1420
BspMI	ACCTGC	1 cut(s)	382
BspPI	GGATC	8 cut(s)	105, 363, 380, 393, 784, 809, 1198, 1382
BsrDI	GCAATG	2 cut(s)	83, 765
BsrI	ACTGG	4 cut(s)	124, 265, 991, 1054
BssECI	CCNNGG	2 cut(s)	562, 1237
BssT1I	CCWWGG	1 cut(s)	562
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	3 cut(s)	579, 812, 833
BstBAI	YACGTR	2 cut(s)	428, 947
BstDEI	CTNAG	2 cut(s)	5, 378
BstENI	CCTNNNNNAGG	1 cut(s)	243
BstF5I	GGATG	3 cut(s)	733, 868, 1357
BstMAI	GTCTC	1 cut(s)	32
BstMWI	GCNNNNNNNGC	6 cut(s)	290, 293, 314, 634, 1079, 1230
BstNI	CCWGG	1 cut(s)	95
BstSCI	CCNGG	2 cut(s)	93, 1237
BstSFI	CTRYAG	1 cut(s)	575
BstV1I	GCAGC	6 cut(s)	271, 280, 295, 654, 832, 1210
BstV2I	GAAGAC	1 cut(s)	987
BstX2I	RGATCY	3 cut(s)	97, 385, 776
BstXI	CCANNNNNNTGG	1 cut(s)	747
BstYI	RGATCY	3 cut(s)	97, 385, 776
BsuI	GTATCC	1 cut(s)	916
BsuRI	GGCC	2 cut(s)	789, 1249
BtrI	CACGTC	1 cut(s)	931
BtsCI	GGATG	3 cut(s)	733, 868, 1357
BtsIMutI	CAGTG	1 cut(s)	808
BveI	ACCTGC	1 cut(s)	382
Cfr13I	GGNCC	3 cut(s)	787, 1248, 1418
CseI	GACGC	2 cut(s)	14, 710
Csp6I	GTAC	5 cut(s)	258, 371, 944, 951, 1365
CviAII	CATG	7 cut(s)	607, 649, 708, 803, 910, 1030, 1099
CviQI	GTAC	5 cut(s)	258, 371, 944, 951, 1365
DdeI	CTNAG	2 cut(s)	5, 378
DriI	GACNNNNNGTC	1 cut(s)	1411
Eam1105I	GACNNNNNGTC	1 cut(s)	1411
Eco130I	CCWWGG	1 cut(s)	562
Eco47I	GGWCC	1 cut(s)	1418
Eco57I	CTGAAG	2 cut(s)	411, 981
EcoNI	CCTNNNNNAGG	1 cut(s)	243
EcoO109I	RGGNCCY	2 cut(s)	787, 1418
EcoRII	CCWGG	1 cut(s)	93
EcoT14I	CCWWGG	1 cut(s)	562
ErhI	CCWWGG	1 cut(s)	562
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	7 cut(s)	610, 652, 711, 806, 913, 1033, 1102
FalI	AAGNNNNNCTT	2 cut(s)	406, 438
FaqI	GGGAC	1 cut(s)	1404
FatI	CATG	7 cut(s)	606, 648, 707, 802, 909, 1029, 1098
FbaI	TGATCA	1 cut(s)	805
Fnu4HI	GCNGC	6 cut(s)	285, 294, 309, 668, 846, 1199
FokI	GGATG	3 cut(s)	720, 875, 1344
Fsp4HI	GCNGC	6 cut(s)	285, 294, 309, 668, 846, 1199
FspBI	CTAG	1 cut(s)	473
GluI	GCNGC	6 cut(s)	285, 294, 309, 668, 846, 1199
GsuI	CTGGAG	2 cut(s)	141, 294
HaeIII	GGCC	2 cut(s)	789, 1249
HapII	CCGG	2 cut(s)	725, 1239
HgaI	GACGC	2 cut(s)	14, 710
Hin1II	CATG	7 cut(s)	610, 652, 711, 806, 913, 1033, 1102
HinfI	GANTC	3 cut(s)	728, 1026, 1382
HpaII	CCGG	2 cut(s)	725, 1239
HphI	GGTGA	4 cut(s)	821, 925, 1295, 1346
Hpy166II	GTNNAC	1 cut(s)	1354
Hpy188I	TCNGA	5 cut(s)	132, 189, 819, 1000, 1261
Hpy188III	TCNNGA	5 cut(s)	200, 389, 725, 1037, 1337
Hpy8I	GTNNAC	1 cut(s)	1354
Hpy99I	CGWCG	2 cut(s)	342, 1409
HpyAV	CCTTC	3 cut(s)	10, 1131, 1274
HpyCH4III	ACNGT	3 cut(s)	579, 812, 833
HpyCH4IV	ACGT	4 cut(s)	427, 930, 946, 1011
HpyF10VI	GCNNNNNNNGC	6 cut(s)	290, 293, 314, 634, 1079, 1230
HpyF3I	CTNAG	2 cut(s)	5, 378
HpySE526I	ACGT	4 cut(s)	427, 930, 946, 1011
Hsp92II	CATG	7 cut(s)	610, 652, 711, 806, 913, 1033, 1102
Kpn2I	TCCGGA	1 cut(s)	724
Ksp22I	TGATCA	1 cut(s)	805
LmnI	GCTCC	2 cut(s)	571, 1238
Lsp1109I	GCAGC	6 cut(s)	271, 280, 295, 654, 832, 1210
LweI	GCATC	4 cut(s)	89, 625, 713, 1147
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	4 cut(s)	427, 930, 946, 1011
MaeIII	GTNAC	3 cut(s)	248, 931, 1101
MboII	GAAGA	2 cut(s)	354, 987
MfeI	CAATTG	1 cut(s)	318
MflI	RGATCY	3 cut(s)	97, 385, 776
MluCI	AATT	5 cut(s)	54, 318, 822, 1174, 1369
MlyI	GAGTC	2 cut(s)	1035, 1376
MmeI	TCCRAC	3 cut(s)	840, 865, 1122
MroI	TCCGGA	1 cut(s)	724
MroXI	GAANNNNTTC	1 cut(s)	994
MseI	TTAA	2 cut(s)	546, 713
MslI	CAYNNNNRTG	2 cut(s)	611, 834
MspA1I	CMGCKG	1 cut(s)	1201
MspI	CCGG	2 cut(s)	725, 1239
MspR9I	CCNGG	2 cut(s)	95, 1239
MunI	CAATTG	1 cut(s)	318
Mva1269I	GAATGC	1 cut(s)	1278
MvaI	CCWGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	6 cut(s)	290, 293, 314, 634, 1079, 1230
NciI	CCSGG	1 cut(s)	1239
NlaIII	CATG	7 cut(s)	610, 652, 711, 806, 913, 1033, 1102
NlaIV	GGNNCC	5 cut(s)	142, 387, 788, 1234, 1420
NmuCI	GTSAC	1 cut(s)	931
PctI	GAATGC	1 cut(s)	1278
PdmI	GAANNNNTTC	1 cut(s)	994
PfeI	GAWTC	1 cut(s)	728
Pfl23II	CGTACG	1 cut(s)	943
PfoI	TCCNGGA	1 cut(s)	93
PkrI	GCNGC	6 cut(s)	286, 295, 310, 669, 847, 1200
PleI	GAGTC	2 cut(s)	1034, 1376
PpsI	GAGTC	2 cut(s)	1034, 1376
Ppu21I	YACGTR	2 cut(s)	428, 947
PpuMI	RGGWCCY	1 cut(s)	1418
PsiI	TTATAA	1 cut(s)	501
Psp5II	RGGWCCY	1 cut(s)	1418
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspLI	CGTACG	1 cut(s)	943
PspN4I	GGNNCC	5 cut(s)	142, 387, 788, 1234, 1420
PspPI	GGNCC	3 cut(s)	787, 1248, 1418
PspPPI	RGGWCCY	1 cut(s)	1418
PsuI	RGATCY	3 cut(s)	97, 385, 776
PvuII	CAGCTG	1 cut(s)	1201
RsaI	GTAC	5 cut(s)	259, 372, 945, 952, 1366
RsaNI	GTAC	5 cut(s)	258, 371, 944, 951, 1365
RseI	CAYNNNNRTG	2 cut(s)	611, 834
SaqAI	TTAA	2 cut(s)	546, 713
SatI	GCNGC	6 cut(s)	285, 294, 309, 668, 846, 1199
Sau96I	GGNCC	3 cut(s)	787, 1248, 1418
ScaI	AGTACT	1 cut(s)	1366
SchI	GAGTC	2 cut(s)	1035, 1376
ScrFI	CCNGG	2 cut(s)	95, 1239
SfaNI	GCATC	4 cut(s)	89, 625, 713, 1147
SfcI	CTRYAG	1 cut(s)	575
SinI	GGWCC	1 cut(s)	1418
SmiMI	CAYNNNNRTG	2 cut(s)	611, 834
Sse9I	AATT	5 cut(s)	54, 318, 822, 1174, 1369
SspI	AATATT	1 cut(s)	76
SspMI	CTAG	1 cut(s)	473
StyD4I	CCNGG	2 cut(s)	93, 1237
StyI	CCWWGG	1 cut(s)	562
TaaI	ACNGT	3 cut(s)	579, 812, 833
TaiI	ACGT	4 cut(s)	430, 933, 949, 1014
TaqI	TCGA	5 cut(s)	619, 1075, 1135, 1155, 1380
TasI	AATT	5 cut(s)	54, 318, 822, 1174, 1369
TatI	WGTACW	1 cut(s)	1364
TfiI	GAWTC	1 cut(s)	728
Tru1I	TTAA	2 cut(s)	546, 713
Tru9I	TTAA	2 cut(s)	546, 713
TscAI	CASTG	1 cut(s)	815
TseFI	GTSAC	1 cut(s)	931
TseI	GCWGC	6 cut(s)	284, 293, 308, 667, 845, 1198
Tsp45I	GTSAC	1 cut(s)	931
TspDTI	ATGAA	2 cut(s)	386, 888
TspGWI	ACGGA	1 cut(s)	1322
TspRI	CASTG	1 cut(s)	815
VpaK11BI	GGWCC	1 cut(s)	1418
XagI	CCTNNNNNAGG	1 cut(s)	243
XapI	RAATTY	1 cut(s)	54
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1368
XmnI	GAANNNNTTC	1 cut(s)	994
XspI	CTAG	1 cut(s)	473
ZrmI	AGTACT	1 cut(s)	1366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.