Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003522

Physical Location & Seq

Genomic Coordinates Forward (+)

36760852 .. 36763456

Gene Structure 2605 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g36820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGTGGCAACTATGGGTTCCAGTGGTACTGGGGCTATTGCTGGAGGGGTTGCTGCTGGTACTGCTTTCCTGTTTGCTGCACCTGGAATTACATTTGCTTATTGGCGTCGAAGAAAGCCACAGGATCATTTCTCCTCATTTATCTGAGTATTGGGGATCAAGGCAACATCTTTCAAATGAGGATGCGGCATTAGCAGCGTTTCACTCATCTACTGTCTTTGCAGCTGAGGAGGATCGAAAAGTTCATTTAGGACAGCTCAAAAGGTTTTCCTTGCGCGAGCTACAAGTTGCCACGGATATCTTTAGTAACAAAAATATTCTTGGTAGAGGTAGATTTGGTAAGGTTTATAAAGGACGCTTAGCTGATGGAACTCTGGTTGCTGTAAAAAGACTTAAAGAGGAGAGAACCCAAGGCGAGGAGCTACAGTTCCAAACAGAAGTTGAAATGATTAGCATGGCTGTCCACCGCAATCTGCTTCGTCTGTATGGTTTTTGTATGACACGAACAGAAAGGCTGCTTGTATATCCTTATATTGCTAATGGAAGTGTGGCATCATGTTTAAGAGGAATTCGAAGCAGTGTTGGAGACTTTGGGTTGGCTAAACTCATGGACTACAAGGATACACATGTTACCACACCTGTATGTGGCACAATTGGGCATATGGCACCGGAGCACTTTTCAACTGGAGTGTCTTCCGAGAAAACTGATGTTTTTGGATACGGAGTCATGCTTCTTGAACTCATCACTGGGCAGAAGGCTTTCAATCCTCAGCTTGCGAGTGATGATGATTTCATGTTAGTTGATTGGTTGGAAAGACTTGTTGATGCTGATCTAAATGGAAATTATATTGACGATCAAGTGGAGCAGCTGATCCAAGTAGTTCTACTGTGCACACAAGTCTCCCCAGGGGAACGACCCAAGATGTCAGAGGTTGTCCGGATGCTGGAATGCGATGGTTTGGCTGAAAGATGGGAGGAGTGGCAAAAAGAGGAGGTGATCCGCCAAGATTTCAACACTATTCATCATCCAAGTAATTGGATCATAGACTCACCTTCTCATATTTCTTTGGATGAGTTGTCCGGTCCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0008219 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010008 GO:0010033 GO:0010200 GO:0010243 GO:0010941 GO:0012505 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031090 GO:0031410 GO:0031982 GO:0032870 GO:0033612 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048545 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0060089 GO:0060548 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0140096 GO:1900140 GO:1901564 GO:1901698 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

364

Amino Acids

41.11

Weight (kDa)

5.4

Isoelectric Point (pI)

42.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	102 - 188	4.4e-13	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	104 - 189	4.6e-16	Protein tyrosine and serine/threonine kinase
PK_Tyr_Ser-Thr	PF07714	194 - 315	9.8e-13	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	194 - 313	5.7e-13	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13790 AT2G13800 AT2G13800 AT2G13800 AT2G13800 AT4G33430 AT4G33430
fragaria_vesca	FvH4_5g30840 FvH4_5g30840
malus_domestica	MD08G1221700.v1.1 MD15G1412700.v1.1 MD15G1413000.v1.1 MD15G1413200.v1.1 MD15G1413300.v1.1 MD15G1414000.v1.1
prunus_persica	Prupe.1G558800_v2.0.a1 Prupe.1G558900_v2.0.a1 Prupe.1G558900_v2.0.a1 Prupe.1G558900_v2.0.a1
pyrus_communis	pycom08g19230 pycom15g36730 pycom15g36740 pycom15g36780 pycom15g36820
rosa_chinensis	RchiOBHm_Chr7g0225981
rosa_laevigata	RLG00000001775
rosa_multiflora	Rmu_sc0002092.1_g000002 Rmu_sc0014767.1_g000001
rosa_roxburghii	Rroxscaffold_3G00233340
rosa_rugosa	Rorug07G0233900
rosa_samantha	Rh7AG369400 Rh7BG367900 Rh7CG387800 Rh7DG378900
rosa_wichuraiana	Rw0G020960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	348
AccB1I	GGYRCC	1 cut(s)	664
AccII	CGCG	1 cut(s)	276
AccIII	TCCGGA	1 cut(s)	936
AciI	CCGC	3 cut(s)	185, 466, 1000
AclWI	GGATC	6 cut(s)	131, 163, 240, 865, 991, 1046
AcsI	RAATTY	1 cut(s)	567
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	2 cut(s)	27, 60
AfiI	CCNNNNNNNGG	3 cut(s)	415, 644, 943
AflIII	ACRYGT	1 cut(s)	625
AgsI	TTSAA	6 cut(s)	174, 443, 681, 737, 763, 1012
AjnI	CCWGG	2 cut(s)	81, 904
AloI	GAACNNNNNNTCC	2 cut(s)	410, 442
AluBI	AGCT	7 cut(s)	224, 256, 280, 362, 421, 772, 868
AluI	AGCT	7 cut(s)	224, 256, 280, 362, 421, 772, 868
Alw21I	GWGCWC	2 cut(s)	675, 893
Alw26I	GTCTC	2 cut(s)	579, 904
Alw44I	GTGCAC	1 cut(s)	889
AlwI	GGATC	6 cut(s)	131, 163, 240, 865, 991, 1046
Aor13HI	TCCGGA	1 cut(s)	936
ApaLI	GTGCAC	1 cut(s)	889
ApeKI	GCWGC	6 cut(s)	52, 76, 194, 221, 514, 865
ApoI	RAATTY	1 cut(s)	567
Asp700I	GAANNNNTTC	1 cut(s)	758
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	1 cut(s)	1082
AsuHPI	GGTGA	2 cut(s)	1006, 1041
AsuII	TTCGAA	1 cut(s)	571
AvaII	GGWCC	1 cut(s)	1082
BaeGI	GKGCMC	1 cut(s)	893
BaeI	ACNNNNGTAYC	2 cut(s)	612, 645
BanI	GGYRCC	1 cut(s)	664
BbsI	GAAGAC	1 cut(s)	684
Bbv12I	GWGCWC	2 cut(s)	675, 893
BbvCI	CCTCAGC	2 cut(s)	225, 768
BbvI	GCAGC	6 cut(s)	39, 63, 206, 233, 501, 877
BccI	CCATC	3 cut(s)	359, 947, 963
BciT130I	CCWGG	2 cut(s)	83, 906
BciVI	GTATCC	2 cut(s)	613, 710
BcoDI	GTCTC	2 cut(s)	579, 904
BfmI	CTRYAG	1 cut(s)	422
BfuI	GTATCC	2 cut(s)	613, 710
BisI	GCNGC	7 cut(s)	53, 77, 186, 195, 222, 515, 866
BlpI	GCTNAGC	1 cut(s)	358
BlsI	GCNGC	7 cut(s)	54, 78, 187, 196, 223, 516, 867
Bme1390I	CCNGG	2 cut(s)	83, 906
Bme18I	GGWCC	1 cut(s)	1082
BmgT120I	GGNCC	1 cut(s)	1082
BmiI	GGNNCC	3 cut(s)	18, 666, 1084
BmrFI	CCNGG	2 cut(s)	83, 906
BmrI	ACTGGG	2 cut(s)	38, 756
BmsI	GCATC	4 cut(s)	172, 560, 814, 930
BmuI	ACTGGG	2 cut(s)	38, 756
BpiI	GAAGAC	1 cut(s)	684
BpmI	CTGGAG	2 cut(s)	62, 705
Bpu10I	CCTNAGC	2 cut(s)	225, 768
Bpu1102I	GCTNAGC	1 cut(s)	358
Bpu14I	TTCGAA	1 cut(s)	571
BsaBI	GATNNNNATC	1 cut(s)	828
BsaHI	GRCGYC	1 cut(s)	105
BsaJI	CCNNGG	4 cut(s)	291, 409, 904, 905
BsaWI	WCCGGW	3 cut(s)	667, 936, 1079
BsaXI	ACNNNNNCTCC	2 cut(s)	410, 440
Bsc4I	CCNNNNNNNGG	3 cut(s)	415, 644, 943
Bse1I	ACTGG	4 cut(s)	20, 33, 688, 751
Bse8I	GATNNNNATC	1 cut(s)	828
BseAI	TCCGGA	1 cut(s)	936
BseBI	CCWGG	2 cut(s)	83, 906
BseDI	CCNNGG	4 cut(s)	291, 409, 904, 905
BseGI	GGATG	4 cut(s)	187, 945, 1024, 1075
BseJI	GATNNNNATC	1 cut(s)	828
BseLI	CCNNNNNNNGG	3 cut(s)	415, 644, 943
BseMII	CTCAG	3 cut(s)	135, 216, 782
BseNI	ACTGG	4 cut(s)	20, 33, 688, 751
BseRI	GAGGAG	6 cut(s)	123, 242, 413, 431, 989, 1004
BseSI	GKGCMC	1 cut(s)	893
BseXI	GCAGC	6 cut(s)	39, 63, 206, 233, 501, 877
BsgI	GTGCAG	1 cut(s)	62
Bsh1236I	CGCG	1 cut(s)	276
BshNI	GGYRCC	1 cut(s)	664
BsiHKAI	GWGCWC	2 cut(s)	675, 893
BsiSI	CCGG	3 cut(s)	668, 937, 1080
BslFI	GGGAC	1 cut(s)	1068
BslI	CCNNNNNNNGG	3 cut(s)	415, 644, 943
BsmAI	GTCTC	2 cut(s)	579, 904
BsmFI	GGGAC	1 cut(s)	1068
BsmI	GAATGC	1 cut(s)	953
Bsp119I	TTCGAA	1 cut(s)	571
Bsp1286I	GDGCHC	2 cut(s)	675, 893
Bsp13I	TCCGGA	1 cut(s)	936
Bsp143I	GATC	8 cut(s)	123, 155, 232, 829, 853, 870, 996, 1038
Bsp1720I	GCTNAGC	1 cut(s)	358
BspACI	CCGC	3 cut(s)	185, 466, 1000
BspCNI	CTCAG	3 cut(s)	136, 217, 781
BspEI	TCCGGA	1 cut(s)	936
BspFNI	CGCG	1 cut(s)	276
BspLI	GGNNCC	3 cut(s)	18, 666, 1084
BspPI	GGATC	6 cut(s)	131, 163, 240, 865, 991, 1046
BspT104I	TTCGAA	1 cut(s)	571
BspT107I	GGYRCC	1 cut(s)	664
BsrI	ACTGG	4 cut(s)	20, 33, 688, 751
BssECI	CCNNGG	4 cut(s)	291, 409, 904, 905
BssMI	GATC	8 cut(s)	123, 155, 232, 829, 853, 870, 996, 1038
BssNI	GRCGYC	1 cut(s)	105
BssT1I	CCWWGG	1 cut(s)	409
Bst2UI	CCWGG	2 cut(s)	83, 906
Bst4CI	ACNGT	3 cut(s)	214, 426, 888
BstACI	GRCGYC	1 cut(s)	105
BstBI	TTCGAA	1 cut(s)	571
BstC8I	GCNNGC	2 cut(s)	278, 774
BstDEI	CTNAG	4 cut(s)	144, 225, 358, 768
BstDSI	CCRYGG	1 cut(s)	291
BstF5I	GGATG	4 cut(s)	187, 945, 1024, 1075
BstFNI	CGCG	1 cut(s)	276
BstHHI	GCGC	1 cut(s)	276
BstKTI	GATC	8 cut(s)	126, 158, 235, 832, 856, 873, 999, 1041
BstMAI	GTCTC	2 cut(s)	579, 904
BstMBI	GATC	8 cut(s)	123, 155, 232, 829, 853, 870, 996, 1038
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 191, 194
BstNI	CCWGG	2 cut(s)	83, 906
BstNSI	RCATGY	1 cut(s)	629
BstSCI	CCNGG	2 cut(s)	81, 904
BstSFI	CTRYAG	1 cut(s)	422
BstSLI	GKGCMC	1 cut(s)	893
BstUI	CGCG	1 cut(s)	276
BstV1I	GCAGC	6 cut(s)	39, 63, 206, 233, 501, 877
BstV2I	GAAGAC	1 cut(s)	684
BstXI	CCANNNNNNTGG	1 cut(s)	1035
BsuI	GTATCC	2 cut(s)	613, 710
BtgI	CCRYGG	1 cut(s)	291
BtgZI	GCGATG	1 cut(s)	966
BtsCI	GGATG	4 cut(s)	187, 945, 1024, 1075
BtsI	GCAGTG	1 cut(s)	583
BtsIMutI	CAGTG	3 cut(s)	27, 583, 744
Cac8I	GCNNGC	2 cut(s)	278, 774
CfoI	GCGC	1 cut(s)	276
Cfr13I	GGNCC	1 cut(s)	1082
CseI	GACGC	2 cut(s)	94, 363
Csp6I	GTAC	2 cut(s)	26, 59
CviAII	CATG	6 cut(s)	454, 555, 607, 626, 727, 793
CviQI	GTAC	2 cut(s)	26, 59
DdeI	CTNAG	4 cut(s)	144, 225, 358, 768
DpnI	GATC	8 cut(s)	125, 157, 234, 831, 855, 872, 998, 1040
DpnII	GATC	8 cut(s)	123, 155, 232, 829, 853, 870, 996, 1038
EciI	GGCGGA	1 cut(s)	989
Eco130I	CCWWGG	1 cut(s)	409
Eco32I	GATATC	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	1082
EcoRI	GAATTC	1 cut(s)	567
EcoRII	CCWGG	2 cut(s)	81, 904
EcoRV	GATATC	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	6 cut(s)	457, 558, 610, 629, 730, 796
FaqI	GGGAC	1 cut(s)	1068
FatI	CATG	6 cut(s)	453, 554, 606, 625, 726, 792
FauNDI	CATATG	1 cut(s)	660
Fnu4HI	GCNGC	7 cut(s)	53, 77, 186, 195, 222, 515, 866
FokI	GGATG	4 cut(s)	194, 952, 1011, 1082
Fsp4HI	GCNGC	7 cut(s)	53, 77, 186, 195, 222, 515, 866
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	7 cut(s)	53, 77, 186, 195, 222, 515, 866
GsuI	CTGGAG	2 cut(s)	62, 705
HapII	CCGG	3 cut(s)	668, 937, 1080
HgaI	GACGC	2 cut(s)	94, 363
HhaI	GCGC	1 cut(s)	276
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	6 cut(s)	457, 558, 610, 629, 730, 796
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HinfI	GANTC	2 cut(s)	723, 1046
HpaII	CCGG	3 cut(s)	668, 937, 1080
HphI	GGTGA	2 cut(s)	1006, 1041
Hpy166II	GTNNAC	2 cut(s)	463, 891
Hpy188I	TCNGA	3 cut(s)	145, 697, 928
Hpy188III	TCNNGA	2 cut(s)	734, 937
Hpy8I	GTNNAC	2 cut(s)	463, 891
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	748, 1062
HpyCH4III	ACNGT	3 cut(s)	214, 426, 888
HpyCH4V	TGCA	3 cut(s)	79, 221, 891
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 191, 194
HpyF3I	CTNAG	4 cut(s)	144, 225, 358, 768
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	6 cut(s)	457, 558, 610, 629, 730, 796
HspAI	GCGC	1 cut(s)	274
Kpn2I	TCCGGA	1 cut(s)	936
Kzo9I	GATC	8 cut(s)	123, 155, 232, 829, 853, 870, 996, 1038
LmnI	GCTCC	3 cut(s)	418, 670, 862
Lsp1109I	GCAGC	6 cut(s)	39, 63, 206, 233, 501, 877
LweI	GCATC	4 cut(s)	172, 560, 814, 930
MaeIII	GTNAC	2 cut(s)	305, 628
MalI	GATC	8 cut(s)	125, 157, 234, 831, 855, 872, 998, 1040
MboI	GATC	8 cut(s)	123, 155, 232, 829, 853, 870, 996, 1038
MboII	GAAGA	2 cut(s)	122, 684
MfeI	CAATTG	1 cut(s)	651
MhlI	GDGCHC	2 cut(s)	675, 893
MluCI	AATT	5 cut(s)	86, 567, 651, 841, 1033
MlyI	GAGTC	2 cut(s)	732, 1040
MmeI	TCCRAC	2 cut(s)	562, 789
MroI	TCCGGA	1 cut(s)	936
MroXI	GAANNNNTTC	1 cut(s)	758
MseI	TTAA	2 cut(s)	393, 560
MslI	CAYNNNNRTG	1 cut(s)	640
MspA1I	CMGCKG	2 cut(s)	224, 868
MspI	CCGG	3 cut(s)	668, 937, 1080
MspR9I	CCNGG	2 cut(s)	83, 906
MunI	CAATTG	1 cut(s)	651
Mva1269I	GAATGC	1 cut(s)	953
MvaI	CCWGG	2 cut(s)	83, 906
MvnI	CGCG	1 cut(s)	276
MwoI	GCNNNNNNNGC	3 cut(s)	61, 191, 194
NdeI	CATATG	1 cut(s)	660
NdeII	GATC	8 cut(s)	123, 155, 232, 829, 853, 870, 996, 1038
NlaIII	CATG	6 cut(s)	457, 558, 610, 629, 730, 796
NlaIV	GGNNCC	3 cut(s)	18, 666, 1084
NspI	RCATGY	1 cut(s)	629
NspV	TTCGAA	1 cut(s)	571
PasI	CCCWGGG	1 cut(s)	905
PciI	ACATGT	1 cut(s)	625
PctI	GAATGC	1 cut(s)	953
PdmI	GAANNNNTTC	1 cut(s)	758
PkrI	GCNGC	7 cut(s)	54, 78, 187, 196, 223, 516, 867
PleI	GAGTC	2 cut(s)	731, 1040
PpsI	GAGTC	2 cut(s)	731, 1040
PscI	ACATGT	1 cut(s)	625
PsiI	TTATAA	1 cut(s)	348
Psp6I	CCWGG	2 cut(s)	81, 904
PspGI	CCWGG	2 cut(s)	81, 904
PspN4I	GGNNCC	3 cut(s)	18, 666, 1084
PspPI	GGNCC	1 cut(s)	1082
PvuII	CAGCTG	2 cut(s)	224, 868
RsaI	GTAC	2 cut(s)	27, 60
RsaNI	GTAC	2 cut(s)	26, 59
RseI	CAYNNNNRTG	1 cut(s)	640
SaqAI	TTAA	2 cut(s)	393, 560
SatI	GCNGC	7 cut(s)	53, 77, 186, 195, 222, 515, 866
Sau3AI	GATC	8 cut(s)	123, 155, 232, 829, 853, 870, 996, 1038
Sau96I	GGNCC	1 cut(s)	1082
SchI	GAGTC	2 cut(s)	732, 1040
ScrFI	CCNGG	2 cut(s)	83, 906
SduI	GDGCHC	2 cut(s)	675, 893
SfaNI	GCATC	4 cut(s)	172, 560, 814, 930
SfcI	CTRYAG	1 cut(s)	422
SfuI	TTCGAA	1 cut(s)	571
SinI	GGWCC	1 cut(s)	1082
SmiMI	CAYNNNNRTG	1 cut(s)	640
Sse9I	AATT	5 cut(s)	86, 567, 651, 841, 1033
SsiI	CCGC	3 cut(s)	185, 466, 1000
SspI	AATATT	1 cut(s)	316
StyD4I	CCNGG	2 cut(s)	81, 904
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	3 cut(s)	214, 426, 888
TaqI	TCGA	3 cut(s)	108, 235, 571
TasI	AATT	5 cut(s)	86, 567, 651, 841, 1033
TauI	GCSGC	1 cut(s)	188
Tru1I	TTAA	2 cut(s)	393, 560
Tru9I	TTAA	2 cut(s)	393, 560
TscAI	CASTG	3 cut(s)	27, 583, 751
TseI	GCWGC	6 cut(s)	52, 76, 194, 221, 514, 865
TspDTI	ATGAA	3 cut(s)	233, 781, 1010
TspGWI	ACGGA	2 cut(s)	308, 735
TspRI	CASTG	3 cut(s)	27, 583, 751
VneI	GTGCAC	1 cut(s)	889
VpaK11BI	GGWCC	1 cut(s)	1082
XapI	RAATTY	1 cut(s)	567
XceI	RCATGY	1 cut(s)	629
XmnI	GAANNNNTTC	1 cut(s)	758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.