Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003522

Physical Location & Seq

Genomic Coordinates Forward (+)

36700543 .. 36702701

Gene Structure 2159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g36740.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGATTAGCATGGCTGTCCACCGCAATCTGCTTCGTCTGCGTGGTTTTTGCATGACACCAACAGAAAGGCTGCTAGTATATCCTTATATGTCTAATGGAAGTGTGGCATCATGTTTAAGAGATCGTCCAGAAGGACAAGCTGCACTTGATTGGCCAATAAGACAACGTATTGCATTGGGATCTGCAAGAGGCCTTGCTTATTTACATGATCACTGTGATCCAAAAATTATTCACCGTGATGTGAAAGCAGCAAACATATTGTTGGATGAGGAATTCGAAGCAGTTGTTGGAGACTTTGGGTTAGCTAAACTTATGGACTACAAGGATACACATGTTACCACAGCTGTACGTGGCACAATTGGTCATATAGCACCAGAGTACCTTTCAACTGGAAAATCTTCCGAGAAAACTGATGTTTTTGGATACGGAGTCATGCTTCTTGAACTCATCACTGGGCAGAGGGCTTTTGATCTTGCTCGGCTTGCGAATGATGATGATGTCATGTTACTTGATTGGGTCAAAGGACTACTGAAAGATCGGAGGTTGGAAACACTTGTTGATGCTGATCTAAATGGAAATTATGTTGACGATGAAGTGGAGCAGCTCATCCAAGTAGCTCTGCTGTGCACACAAGGCACCCCAGGGGAACGACCCAAGATGTCAGAGGTTGTCCGAATGCTGGAAGGCGATGGTTTGGCTGAAAGATGGGAGGAGTGGCAAAAAGAGGAGGTGTTCCGCCAAGATTTCAACCCTATTCATCATCCAAGTACTAATTGGATCATAGACTCAACTTCTCATATTCCTCCGGATGAGTTGTCCGGTCCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0008219 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010008 GO:0010033 GO:0010200 GO:0010243 GO:0010941 GO:0012505 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031090 GO:0031410 GO:0031982 GO:0032870 GO:0033612 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048545 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0060089 GO:0060548 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0140096 GO:1900140 GO:1901564 GO:1901698 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

277

Amino Acids

31.14

Weight (kDa)

5.07

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13790 AT2G13800 AT2G13800 AT2G13800 AT2G13800 AT4G33430 AT4G33430
fragaria_vesca	FvH4_5g30840 FvH4_5g30840
malus_domestica	MD08G1221700.v1.1 MD15G1412700.v1.1 MD15G1413000.v1.1 MD15G1413200.v1.1 MD15G1413300.v1.1 MD15G1414000.v1.1
prunus_persica	Prupe.1G558800_v2.0.a1 Prupe.1G558900_v2.0.a1 Prupe.1G558900_v2.0.a1 Prupe.1G558900_v2.0.a1
pyrus_communis	pycom08g19230 pycom15g36730 pycom15g36740 pycom15g36780 pycom15g36820
rosa_chinensis	RchiOBHm_Chr7g0225981
rosa_laevigata	RLG00000001775
rosa_multiflora	Rmu_sc0002092.1_g000002 Rmu_sc0014767.1_g000001
rosa_roxburghii	Rroxscaffold_3G00233340
rosa_rugosa	Rorug07G0233900
rosa_samantha	Rh7AG369400 Rh7BG367900 Rh7CG387800 Rh7DG378900
rosa_wichuraiana	Rw0G020960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	635
AccIII	TCCGGA	1 cut(s)	805
AciI	CCGC	2 cut(s)	22, 736
AclWI	GGATC	3 cut(s)	187, 212, 785
AcoI	YGGCCR	1 cut(s)	152
AcsI	RAATTY	1 cut(s)	272
AfaI	GTAC	3 cut(s)	348, 380, 769
AfiI	CCNNNNNNNGG	1 cut(s)	679
AflIII	ACRYGT	1 cut(s)	331
AgsI	TTSAA	3 cut(s)	387, 443, 748
AjnI	CCWGG	1 cut(s)	640
AjuI	GAANNNNNNNTTGG	2 cut(s)	270, 302
AluBI	AGCT	5 cut(s)	140, 305, 344, 604, 617
AluI	AGCT	5 cut(s)	140, 305, 344, 604, 617
Alw21I	GWGCWC	1 cut(s)	629
Alw26I	GTCTC	1 cut(s)	285
Alw44I	GTGCAC	1 cut(s)	625
AlwI	GGATC	3 cut(s)	187, 212, 785
Aor13HI	TCCGGA	1 cut(s)	805
AoxI	GGCC	2 cut(s)	152, 190
ApaLI	GTGCAC	1 cut(s)	625
ApeKI	GCWGC	4 cut(s)	70, 140, 248, 601
ApoI	RAATTY	1 cut(s)	272
Asp700I	GAANNNNTTC	1 cut(s)	397
AspS9I	GGNCC	1 cut(s)	821
AsuHPI	GGTGA	1 cut(s)	224
AsuII	TTCGAA	1 cut(s)	276
AvaII	GGWCC	1 cut(s)	821
BaeGI	GKGCMC	1 cut(s)	629
BaeI	ACNNNNGTAYC	4 cut(s)	318, 351, 362, 395
BalI	TGGCCA	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	635
Bbv12I	GWGCWC	1 cut(s)	629
BbvI	GCAGC	4 cut(s)	57, 127, 260, 613
BccI	CCATC	2 cut(s)	683, 699
BciT130I	CCWGG	1 cut(s)	642
BciVI	GTATCC	2 cut(s)	319, 416
BclI	TGATCA	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	285
BfaI	CTAG	1 cut(s)	74
BfuI	GTATCC	2 cut(s)	319, 416
BisI	GCNGC	4 cut(s)	71, 141, 249, 602
BlsI	GCNGC	4 cut(s)	72, 142, 250, 603
BmcAI	AGTACT	1 cut(s)	769
Bme1390I	CCNGG	1 cut(s)	642
Bme18I	GGWCC	1 cut(s)	821
BmgT120I	GGNCC	1 cut(s)	821
BmiI	GGNNCC	2 cut(s)	637, 823
BmrFI	CCNGG	1 cut(s)	642
BmrI	ACTGGG	1 cut(s)	462
BmsI	GCATC	2 cut(s)	116, 550
BmuI	ACTGGG	1 cut(s)	462
Bpu14I	TTCGAA	1 cut(s)	276
BsaAI	YACGTR	1 cut(s)	350
BsaBI	GATNNNNATC	1 cut(s)	564
BsaJI	CCNNGG	2 cut(s)	640, 641
BsaWI	WCCGGW	2 cut(s)	805, 818
Bsc4I	CCNNNNNNNGG	1 cut(s)	679
Bse1I	ACTGG	2 cut(s)	394, 457
Bse8I	GATNNNNATC	1 cut(s)	564
BseAI	TCCGGA	1 cut(s)	805
BseBI	CCWGG	1 cut(s)	642
BseDI	CCNNGG	2 cut(s)	640, 641
BseGI	GGATG	4 cut(s)	271, 606, 760, 814
BseJI	GATNNNNATC	1 cut(s)	564
BseLI	CCNNNNNNNGG	1 cut(s)	679
BseNI	ACTGG	2 cut(s)	394, 457
BseRI	GAGGAG	2 cut(s)	725, 740
BseSI	GKGCMC	1 cut(s)	629
BseXI	GCAGC	4 cut(s)	57, 127, 260, 613
BsgI	GTGCAG	1 cut(s)	126
BshFI	GGCC	2 cut(s)	154, 192
BshNI	GGYRCC	1 cut(s)	635
BsiHKAI	GWGCWC	1 cut(s)	629
BsiSI	CCGG	2 cut(s)	806, 819
BslFI	GGGAC	1 cut(s)	807
BslI	CCNNNNNNNGG	1 cut(s)	679
BsmAI	GTCTC	1 cut(s)	285
BsmFI	GGGAC	1 cut(s)	807
BsmI	GAATGC	1 cut(s)	681
BsnI	GGCC	2 cut(s)	154, 192
Bsp119I	TTCGAA	1 cut(s)	276
Bsp1286I	GDGCHC	1 cut(s)	629
Bsp13I	TCCGGA	1 cut(s)	805
Bsp143I	GATC	8 cut(s)	121, 179, 208, 217, 469, 535, 565, 777
BspACI	CCGC	2 cut(s)	22, 736
BspANI	GGCC	2 cut(s)	154, 192
BspEI	TCCGGA	1 cut(s)	805
BspLI	GGNNCC	2 cut(s)	637, 823
BspPI	GGATC	3 cut(s)	187, 212, 785
BspT104I	TTCGAA	1 cut(s)	276
BspT107I	GGYRCC	1 cut(s)	635
BsrI	ACTGG	2 cut(s)	394, 457
BssECI	CCNNGG	2 cut(s)	640, 641
BssMI	GATC	8 cut(s)	121, 179, 208, 217, 469, 535, 565, 777
Bst2UI	CCWGG	1 cut(s)	642
Bst4CI	ACNGT	2 cut(s)	215, 236
BstBAI	YACGTR	1 cut(s)	350
BstBI	TTCGAA	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	483
BstF5I	GGATG	4 cut(s)	271, 606, 760, 814
BstKTI	GATC	8 cut(s)	124, 182, 211, 220, 472, 538, 568, 780
BstMAI	GTCTC	1 cut(s)	285
BstMBI	GATC	8 cut(s)	121, 179, 208, 217, 469, 535, 565, 777
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 482, 633
BstNI	CCWGG	1 cut(s)	642
BstNSI	RCATGY	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	640
BstSLI	GKGCMC	1 cut(s)	629
BstV1I	GCAGC	4 cut(s)	57, 127, 260, 613
BstX2I	RGATCY	1 cut(s)	179
BstYI	RGATCY	1 cut(s)	179
BsuI	GTATCC	2 cut(s)	319, 416
BsuRI	GGCC	2 cut(s)	154, 192
BtgZI	GCGATG	1 cut(s)	702
BtsCI	GGATG	4 cut(s)	271, 606, 760, 814
BtsIMutI	CAGTG	2 cut(s)	211, 450
Cac8I	GCNNGC	1 cut(s)	483
Cfr13I	GGNCC	1 cut(s)	821
Csp6I	GTAC	3 cut(s)	347, 379, 768
CviAII	CATG	7 cut(s)	10, 52, 111, 206, 332, 433, 502
CviQI	GTAC	3 cut(s)	347, 379, 768
DpnI	GATC	8 cut(s)	123, 181, 210, 219, 471, 537, 567, 779
DpnII	GATC	8 cut(s)	121, 179, 208, 217, 469, 535, 565, 777
EaeI	YGGCCR	1 cut(s)	152
EciI	GGCGGA	1 cut(s)	725
Eco147I	AGGCCT	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	821
EcoRI	GAATTC	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	640
FaeI	CATG	7 cut(s)	13, 55, 114, 209, 335, 436, 505
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FaqI	GGGAC	1 cut(s)	807
FatI	CATG	7 cut(s)	9, 51, 110, 205, 331, 432, 501
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	4 cut(s)	71, 141, 249, 602
FokI	GGATG	4 cut(s)	278, 593, 747, 821
Fsp4HI	GCNGC	4 cut(s)	71, 141, 249, 602
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	4 cut(s)	71, 141, 249, 602
HaeIII	GGCC	2 cut(s)	154, 192
HapII	CCGG	2 cut(s)	806, 819
Hin1II	CATG	7 cut(s)	13, 55, 114, 209, 335, 436, 505
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HinfI	GANTC	2 cut(s)	429, 785
HpaII	CCGG	2 cut(s)	806, 819
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	3 cut(s)	19, 586, 627
Hpy188I	TCNGA	4 cut(s)	403, 540, 664, 674
Hpy188III	TCNNGA	3 cut(s)	128, 440, 806
Hpy8I	GTNNAC	3 cut(s)	19, 586, 627
HpyAV	CCTTC	2 cut(s)	125, 677
HpyCH4III	ACNGT	2 cut(s)	215, 236
HpyCH4IV	ACGT	2 cut(s)	166, 349
HpyCH4V	TGCA	5 cut(s)	51, 143, 173, 185, 627
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 482, 633
HpySE526I	ACGT	2 cut(s)	166, 349
Hsp92II	CATG	7 cut(s)	13, 55, 114, 209, 335, 436, 505
Kpn2I	TCCGGA	1 cut(s)	805
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	8 cut(s)	121, 179, 208, 217, 469, 535, 565, 777
LmnI	GCTCC	1 cut(s)	598
LpnPI	CCDG	8 cut(s)	141, 375, 387, 438, 627, 654, 665, 819
Lsp1109I	GCAGC	4 cut(s)	57, 127, 260, 613
LweI	GCATC	2 cut(s)	116, 550
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	2 cut(s)	166, 349
MaeIII	GTNAC	2 cut(s)	334, 504
MalI	GATC	8 cut(s)	123, 181, 210, 219, 471, 537, 567, 779
MboI	GATC	8 cut(s)	121, 179, 208, 217, 469, 535, 565, 777
MboII	GAAGA	1 cut(s)	390
MfeI	CAATTG	1 cut(s)	357
MflI	RGATCY	1 cut(s)	179
MhlI	GDGCHC	1 cut(s)	629
MlsI	TGGCCA	1 cut(s)	154
MluCI	AATT	5 cut(s)	225, 272, 357, 577, 772
MluNI	TGGCCA	1 cut(s)	154
MlyI	GAGTC	2 cut(s)	438, 779
MmeI	TCCRAC	3 cut(s)	243, 268, 525
MnlI	CCTC	9 cut(s)	182, 262, 453, 534, 658, 703, 718, 721, 813
Mox20I	TGGCCA	1 cut(s)	154
MroI	TCCGGA	1 cut(s)	805
MroXI	GAANNNNTTC	1 cut(s)	397
MscI	TGGCCA	1 cut(s)	154
MseI	TTAA	1 cut(s)	116
MslI	CAYNNNNRTG	1 cut(s)	237
Msp20I	TGGCCA	1 cut(s)	154
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	2 cut(s)	806, 819
MspR9I	CCNGG	1 cut(s)	642
MunI	CAATTG	1 cut(s)	357
Mva1269I	GAATGC	1 cut(s)	681
MvaI	CCWGG	1 cut(s)	642
MwoI	GCNNNNNNNGC	3 cut(s)	37, 482, 633
NdeII	GATC	8 cut(s)	121, 179, 208, 217, 469, 535, 565, 777
NlaIII	CATG	7 cut(s)	13, 55, 114, 209, 335, 436, 505
NlaIV	GGNNCC	2 cut(s)	637, 823
NmeAIII	GCCGAG	1 cut(s)	457
NspI	RCATGY	1 cut(s)	335
NspV	TTCGAA	1 cut(s)	276
PasI	CCCWGGG	1 cut(s)	641
PceI	AGGCCT	1 cut(s)	192
PciI	ACATGT	1 cut(s)	331
PctI	GAATGC	1 cut(s)	681
PdmI	GAANNNNTTC	1 cut(s)	397
PkrI	GCNGC	4 cut(s)	72, 142, 250, 603
PleI	GAGTC	2 cut(s)	437, 779
PpsI	GAGTC	2 cut(s)	437, 779
Ppu21I	YACGTR	1 cut(s)	350
PscI	ACATGT	1 cut(s)	331
Psp6I	CCWGG	1 cut(s)	640
PspGI	CCWGG	1 cut(s)	640
PspN4I	GGNNCC	2 cut(s)	637, 823
PspPI	GGNCC	1 cut(s)	821
PsuI	RGATCY	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	344
RsaI	GTAC	3 cut(s)	348, 380, 769
RsaNI	GTAC	3 cut(s)	347, 379, 768
RseI	CAYNNNNRTG	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	116
SatI	GCNGC	4 cut(s)	71, 141, 249, 602
Sau3AI	GATC	8 cut(s)	121, 179, 208, 217, 469, 535, 565, 777
Sau96I	GGNCC	1 cut(s)	821
ScaI	AGTACT	1 cut(s)	769
SchI	GAGTC	2 cut(s)	438, 779
ScrFI	CCNGG	1 cut(s)	642
SduI	GDGCHC	1 cut(s)	629
SfaNI	GCATC	2 cut(s)	116, 550
SfuI	TTCGAA	1 cut(s)	276
SinI	GGWCC	1 cut(s)	821
SmiMI	CAYNNNNRTG	1 cut(s)	237
Sse9I	AATT	5 cut(s)	225, 272, 357, 577, 772
SseBI	AGGCCT	1 cut(s)	192
SsiI	CCGC	2 cut(s)	22, 736
SspMI	CTAG	1 cut(s)	74
StuI	AGGCCT	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	640
TaaI	ACNGT	2 cut(s)	215, 236
TaiI	ACGT	2 cut(s)	169, 352
TaqI	TCGA	1 cut(s)	276
TasI	AATT	5 cut(s)	225, 272, 357, 577, 772
TatI	WGTACW	1 cut(s)	767
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TscAI	CASTG	2 cut(s)	218, 457
TseI	GCWGC	4 cut(s)	70, 140, 248, 601
TspDTI	ATGAA	2 cut(s)	606, 746
TspGWI	ACGGA	1 cut(s)	441
TspRI	CASTG	2 cut(s)	218, 457
VneI	GTGCAC	1 cut(s)	625
VpaK11BI	GGWCC	1 cut(s)	821
XapI	RAATTY	1 cut(s)	272
XceI	RCATGY	1 cut(s)	335
XcmI	CCANNNNNNNNNTGG	1 cut(s)	771
XmnI	GAANNNNTTC	1 cut(s)	397
XspI	CTAG	1 cut(s)	74
ZrmI	AGTACT	1 cut(s)	769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.