Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003522

Physical Location & Seq

Genomic Coordinates Reverse (-)

19282057 .. 19288742

Gene Structure 6686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00233340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGTTCTCCGCGACCAAGGCCTGGCTGATTCTTCTACTCTGCGGCTTTCTTCAACTACTCGTTAAGGTCTCCGCCAACGTCGAAGGTGACGCATTGAATGCCTTGAAGAGCAATTTGGCTGATCCTAACAATGTTCTCCAGAGTTGGGATCCTACTTTGGTCAATCCCTGCACATGGTTCCATGTCACTTGCAATTCCGAAAACAGCGTTACCAGAGTTGATCTTGGCAATGCTAATCTCTCCGGTACCCTGGTGACGCAGCTCGGTGTGCTTACCAATTTACAGTACTTGGAACTTTATAGTAATAACATAACTGGTAATATTCCAGTCGAGCTTGGCAGTTTGAACAACCTGGTGAGCTTGGATCTTTACTTGAACAAATTAGATGGTGAAATTCCAGCCTCACTTGGCAAGCTTGAAAAGCTGCGTTTCCTGCGTCTCAACAACAATACCTTGATGGGGGAAATTCCCAGAACGCTGACTACTATTGAATCATTGCAAGTCCTGGATCTTTCAAACAACAATCTTACTGGAGATATTCCGATCAATGGTTCCTTTTCACTCTTTACTCCCATCAGTTTTGCCAATAATCCTCGTCTGAATAAACTTCCAGACACTCCATCTCCTCCTGTTTCTCCAAGCCCAAATCCTATTTCAGGTAACAGCCGTACTGGGGCTATTGCTGGAGGGGTTGCTGCTGGTGCTGCTTTGCTGTTTGCTGCCCCTGCAATTGCACTTGCTTGGTGGCGACGAAGAAAACCACAGGATCATTTCTTTGATGTACCTGCTGAGGAGGATCCTGAAGTTCATTTAGGACAGCTCAAAAGGTTTTCTTTACGTGAGCTACAAGTTGCAACAGATACCTTTAGCAATAGACATATTCTAGGTAGAGGTGGATTTGGTAAGGTTTATAAAGGGCGTTTAGCTGATGGTTCTCTGGTAGCTGTAAAAAGACTTAAAGAGGAGAGAACCCAAGGTGGGGAGCTACAGTTCCAAACAGAAGTAGAAATGATTAGCATGGCTGTGCATCGAAATCTGCTTCGTCTGCGTGGTTTTTTGCATGACACCAACAGAAAGGCTGCTCGTATATCCATATATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0008219 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010008 GO:0010033 GO:0010200 GO:0010243 GO:0010941 GO:0012505 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031090 GO:0031410 GO:0031982 GO:0032870 GO:0033612 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048545 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0060089 GO:0060548 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0140096 GO:1900140 GO:1901564 GO:1901698 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

367

Amino Acids

40.22

Weight (kDa)

8.73

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	26 - 65	8.2e-12	Leucine rich repeat N-terminal domain
LRR_14	PF23598	74 - 173	7.1e-12	Leucine-rich repeat region
Pkinase	PF00069	290 - 357	2.5e-08	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	293 - 355	4.3e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13790 AT2G13800 AT2G13800 AT2G13800 AT2G13800 AT4G33430 AT4G33430
fragaria_vesca	FvH4_5g30840 FvH4_5g30840
malus_domestica	MD08G1221700.v1.1 MD15G1412700.v1.1 MD15G1413000.v1.1 MD15G1413200.v1.1 MD15G1413300.v1.1 MD15G1414000.v1.1
prunus_persica	Prupe.1G558800_v2.0.a1 Prupe.1G558900_v2.0.a1 Prupe.1G558900_v2.0.a1 Prupe.1G558900_v2.0.a1
pyrus_communis	pycom08g19230 pycom15g36730 pycom15g36740 pycom15g36780 pycom15g36820
rosa_chinensis	RchiOBHm_Chr7g0225981
rosa_laevigata	RLG00000001775
rosa_multiflora	Rmu_sc0002092.1_g000002 Rmu_sc0014767.1_g000001
rosa_roxburghii	Rroxscaffold_3G00233340
rosa_rugosa	Rorug07G0233900
rosa_samantha	Rh7AG369400 Rh7BG367900 Rh7CG387800 Rh7DG378900
rosa_wichuraiana	Rw0G020960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	912
Acc36I	ACCTGC	1 cut(s)	793
Acc65I	GGTACC	1 cut(s)	245
AccB1I	GGYRCC	1 cut(s)	245
AccB7I	CCANNNNNTGG	1 cut(s)	21
AccII	CGCG	1 cut(s)	11
AciI	CCGC	3 cut(s)	9, 42, 72
AclWI	GGATC	8 cut(s)	116, 143, 156, 372, 516, 774, 791, 804
AcsI	RAATTY	2 cut(s)	393, 465
AcuI	CTGAAG	1 cut(s)	822
AfaI	GTAC	4 cut(s)	247, 287, 670, 783
AfiI	CCNNNNNNNGG	9 cut(s)	21, 145, 174, 459, 548, 656, 673, 978, 979
AgsI	TTSAA	8 cut(s)	53, 97, 106, 346, 376, 419, 491, 516
AjnI	CCWGG	4 cut(s)	20, 249, 351, 504
AjuI	GAANNNNNNNTTGG	4 cut(s)	98, 130, 637, 669
AloI	GAACNNNNNNTCC	2 cut(s)	974, 1006
Alw26I	GTCTC	2 cut(s)	73, 443
AlwI	GGATC	8 cut(s)	116, 143, 156, 372, 516, 774, 791, 804
AoxI	GGCC	1 cut(s)	18
ApeKI	GCWGC	6 cut(s)	259, 424, 695, 704, 719, 1079
ApoI	RAATTY	2 cut(s)	393, 465
Asp718I	GGTACC	1 cut(s)	245
AsuHPI	GGTGA	4 cut(s)	98, 265, 367, 401
BaeI	ACNNNNGTAYC	2 cut(s)	237, 270
BamHI	GGATCC	2 cut(s)	148, 796
BanI	GGYRCC	1 cut(s)	245
BbvCI	CCTCAGC	1 cut(s)	789
BbvI	GCAGC	6 cut(s)	271, 411, 682, 691, 706, 1066
BccI	CCATC	5 cut(s)	380, 451, 581, 628, 923
BceAI	ACGGC	1 cut(s)	651
BciT130I	CCWGG	4 cut(s)	22, 251, 353, 506
BcoDI	GTCTC	2 cut(s)	73, 443
BfaI	CTAG	1 cut(s)	884
BfmI	CTRYAG	1 cut(s)	986
BfuAI	ACCTGC	1 cut(s)	793
BisI	GCNGC	7 cut(s)	43, 260, 425, 696, 705, 720, 1080
BlsI	GCNGC	7 cut(s)	44, 261, 426, 697, 706, 721, 1081
BmcAI	AGTACT	1 cut(s)	287
Bme1390I	CCNGG	4 cut(s)	22, 251, 353, 506
BmiI	GGNNCC	5 cut(s)	150, 179, 247, 553, 798
BmrFI	CCNGG	4 cut(s)	22, 251, 353, 506
BmrI	ACTGGG	1 cut(s)	681
BmsI	GCATC	1 cut(s)	1036
BmuI	ACTGGG	1 cut(s)	681
BpmI	CTGGAG	3 cut(s)	122, 552, 705
Bpu10I	CCTNAGC	1 cut(s)	789
BsaAI	YACGTR	1 cut(s)	839
BsaI	GGTCTC	1 cut(s)	73
BsaJI	CCNNGG	3 cut(s)	15, 249, 973
BsaWI	WCCGGW	1 cut(s)	242
BsaXI	ACNNNNNCTCC	4 cut(s)	607, 637, 974, 1004
Bsc4I	CCNNNNNNNGG	9 cut(s)	21, 145, 174, 459, 548, 656, 673, 978, 979
Bse1I	ACTGG	4 cut(s)	319, 326, 535, 676
Bse3DI	GCAATG	2 cut(s)	235, 494
BseBI	CCWGG	4 cut(s)	22, 251, 353, 506
BseDI	CCNNGG	3 cut(s)	15, 249, 973
BseLI	CCNNNNNNNGG	9 cut(s)	21, 145, 174, 459, 548, 656, 673, 978, 979
BseMI	GCAATG	2 cut(s)	235, 494
BseMII	CTCAG	1 cut(s)	780
BseNI	ACTGG	4 cut(s)	319, 326, 535, 676
BseRI	GAGGAG	3 cut(s)	615, 806, 977
BseXI	GCAGC	6 cut(s)	271, 411, 682, 691, 706, 1066
BsgI	GTGCAG	1 cut(s)	154
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	1 cut(s)	20
BshNI	GGYRCC	1 cut(s)	245
BsiSI	CCGG	1 cut(s)	243
BslI	CCNNNNNNNGG	9 cut(s)	21, 145, 174, 459, 548, 656, 673, 978, 979
BsmAI	GTCTC	2 cut(s)	73, 443
BsmBI	CGTCTC	1 cut(s)	443
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	1 cut(s)	20
Bso31I	GGTCTC	1 cut(s)	73
Bsp143I	GATC	8 cut(s)	121, 148, 220, 364, 508, 543, 766, 796
BspACI	CCGC	3 cut(s)	9, 42, 72
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	1 cut(s)	781
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	5 cut(s)	150, 179, 247, 553, 798
BspMI	ACCTGC	1 cut(s)	793
BspPI	GGATC	8 cut(s)	116, 143, 156, 372, 516, 774, 791, 804
BspQI	GCTCTTC	1 cut(s)	101
BspT107I	GGYRCC	1 cut(s)	245
BspTNI	GGTCTC	1 cut(s)	73
BsrDI	GCAATG	2 cut(s)	235, 494
BsrI	ACTGG	4 cut(s)	319, 326, 535, 676
BssECI	CCNNGG	3 cut(s)	15, 249, 973
BssMI	GATC	8 cut(s)	121, 148, 220, 364, 508, 543, 766, 796
BssT1I	CCWWGG	2 cut(s)	15, 973
Bst2UI	CCWGG	4 cut(s)	22, 251, 353, 506
Bst4CI	ACNGT	2 cut(s)	285, 990
Bst6I	CTCTTC	1 cut(s)	101
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstBAI	YACGTR	1 cut(s)	839
BstC8I	GCNNGC	1 cut(s)	413
BstDEI	CTNAG	1 cut(s)	789
BstENI	CCTNNNNNAGG	1 cut(s)	654
BstFNI	CGCG	1 cut(s)	11
BstKTI	GATC	8 cut(s)	124, 151, 223, 367, 511, 546, 769, 799
BstMAI	GTCTC	2 cut(s)	73, 443
BstMBI	GATC	8 cut(s)	121, 148, 220, 364, 508, 543, 766, 796
BstMWI	GCNNNNNNNGC	9 cut(s)	17, 98, 268, 421, 433, 701, 704, 725, 1045
BstNI	CCWGG	4 cut(s)	22, 251, 353, 506
BstSCI	CCNGG	4 cut(s)	20, 249, 351, 504
BstSFI	CTRYAG	1 cut(s)	986
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	6 cut(s)	271, 411, 682, 691, 706, 1066
BstX2I	RGATCY	4 cut(s)	148, 364, 508, 796
BstYI	RGATCY	4 cut(s)	148, 364, 508, 796
BsuRI	GGCC	1 cut(s)	20
BveI	ACCTGC	1 cut(s)	793
Cac8I	GCNNGC	1 cut(s)	413
CseI	GACGC	3 cut(s)	98, 265, 425
CsiI	ACCWGGT	1 cut(s)	351
Csp6I	GTAC	4 cut(s)	246, 286, 669, 782
CviAII	CATG	4 cut(s)	174, 182, 1018, 1061
CviQI	GTAC	4 cut(s)	246, 286, 669, 782
DdeI	CTNAG	1 cut(s)	789
DpnI	GATC	8 cut(s)	123, 150, 222, 366, 510, 545, 768, 798
DpnII	GATC	8 cut(s)	121, 148, 220, 364, 508, 543, 766, 796
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
EciI	GGCGGA	1 cut(s)	61
Eco130I	CCWWGG	2 cut(s)	15, 973
Eco147I	AGGCCT	1 cut(s)	20
Eco31I	GGTCTC	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	822
EcoNI	CCTNNNNNAGG	1 cut(s)	654
EcoRII	CCWGG	4 cut(s)	20, 249, 351, 504
EcoT14I	CCWWGG	2 cut(s)	15, 973
ErhI	CCWWGG	2 cut(s)	15, 973
Esp3I	CGTCTC	1 cut(s)	443
FaeI	CATG	4 cut(s)	177, 185, 1021, 1064
FalI	AAGNNNNNCTT	2 cut(s)	817, 849
FatI	CATG	4 cut(s)	173, 181, 1017, 1060
Fnu4HI	GCNGC	7 cut(s)	43, 260, 425, 696, 705, 720, 1080
Fsp4HI	GCNGC	7 cut(s)	43, 260, 425, 696, 705, 720, 1080
FspBI	CTAG	1 cut(s)	884
GluI	GCNGC	7 cut(s)	43, 260, 425, 696, 705, 720, 1080
GsuI	CTGGAG	3 cut(s)	122, 552, 705
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	1 cut(s)	243
HgaI	GACGC	3 cut(s)	98, 265, 425
Hin1II	CATG	4 cut(s)	177, 185, 1021, 1064
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	2 cut(s)	28, 491
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	4 cut(s)	98, 265, 367, 401
Hpy188I	TCNGA	3 cut(s)	199, 543, 600
Hpy188III	TCNNGA	3 cut(s)	139, 611, 800
Hpy99I	CGWCG	2 cut(s)	83, 753
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	2 cut(s)	285, 990
HpyCH4IV	ACGT	2 cut(s)	78, 838
HpyCH4V	TGCA	8 cut(s)	171, 192, 499, 728, 734, 854, 1027, 1060
HpyF10VI	GCNNNNNNNGC	9 cut(s)	17, 98, 268, 421, 433, 701, 704, 725, 1045
HpyF3I	CTNAG	1 cut(s)	789
HpySE526I	ACGT	2 cut(s)	78, 838
Hsp92II	CATG	4 cut(s)	177, 185, 1021, 1064
KpnI	GGTACC	1 cut(s)	249
Kzo9I	GATC	8 cut(s)	121, 148, 220, 364, 508, 543, 766, 796
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	1 cut(s)	982
Lsp1109I	GCAGC	6 cut(s)	271, 411, 682, 691, 706, 1066
LweI	GCATC	1 cut(s)	1036
MabI	ACCWGGT	1 cut(s)	351
MaeI	CTAG	1 cut(s)	884
MaeII	ACGT	2 cut(s)	78, 838
MaeIII	GTNAC	5 cut(s)	86, 184, 208, 253, 659
MalI	GATC	8 cut(s)	123, 150, 222, 366, 510, 545, 768, 798
MboI	GATC	8 cut(s)	121, 148, 220, 364, 508, 543, 766, 796
MboII	GAAGA	4 cut(s)	23, 41, 118, 765
MfeI	CAATTG	1 cut(s)	729
MflI	RGATCY	4 cut(s)	148, 364, 508, 796
MluCI	AATT	7 cut(s)	112, 193, 277, 380, 393, 465, 729
MnlI	CCTC	8 cut(s)	412, 603, 636, 680, 784, 787, 884, 955
MseI	TTAA	2 cut(s)	63, 957
MslI	CAYNNNNRTG	1 cut(s)	1022
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	4 cut(s)	22, 251, 353, 506
MunI	CAATTG	1 cut(s)	729
Mva1269I	GAATGC	1 cut(s)	103
MvaI	CCWGG	4 cut(s)	22, 251, 353, 506
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	9 cut(s)	17, 98, 268, 421, 433, 701, 704, 725, 1045
NdeII	GATC	8 cut(s)	121, 148, 220, 364, 508, 543, 766, 796
NlaIII	CATG	4 cut(s)	177, 185, 1021, 1064
NlaIV	GGNNCC	5 cut(s)	150, 179, 247, 553, 798
NmuCI	GTSAC	3 cut(s)	86, 184, 253
PceI	AGGCCT	1 cut(s)	20
PciSI	GCTCTTC	1 cut(s)	101
PctI	GAATGC	1 cut(s)	103
PfeI	GAWTC	2 cut(s)	28, 491
PflMI	CCANNNNNTGG	1 cut(s)	21
PfoI	TCCNGGA	1 cut(s)	504
PkrI	GCNGC	7 cut(s)	44, 261, 426, 697, 706, 721, 1081
Ppu21I	YACGTR	1 cut(s)	839
PsiI	TTATAA	1 cut(s)	912
Psp6I	CCWGG	4 cut(s)	20, 249, 351, 504
PspGI	CCWGG	4 cut(s)	20, 249, 351, 504
PspN4I	GGNNCC	5 cut(s)	150, 179, 247, 553, 798
PsrI	GAACNNNNNNTAC	2 cut(s)	466, 498
PsuI	RGATCY	4 cut(s)	148, 364, 508, 796
RsaI	GTAC	4 cut(s)	247, 287, 670, 783
RsaNI	GTAC	4 cut(s)	246, 286, 669, 782
RseI	CAYNNNNRTG	1 cut(s)	1022
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	63, 957
SatI	GCNGC	7 cut(s)	43, 260, 425, 696, 705, 720, 1080
Sau3AI	GATC	8 cut(s)	121, 148, 220, 364, 508, 543, 766, 796
ScaI	AGTACT	1 cut(s)	287
ScrFI	CCNGG	4 cut(s)	22, 251, 353, 506
SexAI	ACCWGGT	1 cut(s)	351
SfaNI	GCATC	1 cut(s)	1036
SfcI	CTRYAG	1 cut(s)	986
SmiMI	CAYNNNNRTG	1 cut(s)	1022
Sse9I	AATT	7 cut(s)	112, 193, 277, 380, 393, 465, 729
SseBI	AGGCCT	1 cut(s)	20
SsiI	CCGC	3 cut(s)	9, 42, 72
SspI	AATATT	1 cut(s)	322
SspMI	CTAG	1 cut(s)	884
StuI	AGGCCT	1 cut(s)	20
StyD4I	CCNGG	4 cut(s)	20, 249, 351, 504
StyI	CCWWGG	2 cut(s)	15, 973
TaaI	ACNGT	2 cut(s)	285, 990
TaiI	ACGT	2 cut(s)	81, 841
TaqI	TCGA	3 cut(s)	81, 330, 1030
TasI	AATT	7 cut(s)	112, 193, 277, 380, 393, 465, 729
TatI	WGTACW	1 cut(s)	285
TauI	GCSGC	1 cut(s)	45
TfiI	GAWTC	2 cut(s)	28, 491
Tru1I	TTAA	2 cut(s)	63, 957
Tru9I	TTAA	2 cut(s)	63, 957
TseFI	GTSAC	3 cut(s)	86, 184, 253
TseI	GCWGC	6 cut(s)	259, 424, 695, 704, 719, 1079
Tsp45I	GTSAC	3 cut(s)	86, 184, 253
TspDTI	ATGAA	1 cut(s)	797
Van91I	CCANNNNNTGG	1 cut(s)	21
XagI	CCTNNNNNAGG	1 cut(s)	654
XapI	RAATTY	2 cut(s)	393, 465
XspI	CTAG	1 cut(s)	884
ZrmI	AGTACT	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.