Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003522

Physical Location & Seq

Genomic Coordinates Forward (+)

51507359 .. 51511490

Gene Structure 4132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG378900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTTCTCCGCGACCAAGGCCTCGCTGATTCTTCTACTCTTCGGCTTTCTTCAACTACTCGTTAGGGTCTCCGCCAACGTCGAAGGTGACGCATTGAATGCCTTGAAGAGCAGTTTGGCTGATCCTAACAATGTTCTCCAGAGTTGGGATCCTACTCTGGTCAATCCCTGCACGTGGTTCCATGTCACTTGCAACTCCGAAAACAGCGTCACCAGAGTTGATCTTGGCAATGCTAATCTCTCCGGTAACCTGGTTACGCAGCTCGGAGTGCTCACCAATTTACAGTACTTGGAACTTTATAGTAATAACATAAGCGGTACTATTCCAACAGAGCTTGGCGGTTTGAACAACCTAGTGAGCTTGGATCTTTACTTGAACAAATTAGATGGCCAAATTCCATCAACACTTGGCAACCTTGAAAAGCTGCGTTTCCTGCGTCTCAACAACAATACCTTGACGGGGGAAATTCCCAGAACGCTGACTAATATTGCATCATTGCAAGTCCTGGATCTTTCAAACAACAATCTTACTGGAGATATTCCGATCAATGGTTCCTTTTCACTCTTTACTCCCATCAGTTTTGCCAATAATCCTCGTCTGAATAAACTTCCAGATGTTCCATCTCCTCCTGTTTCTCCAAGCCCAAGTCCTATTTCAGGTAACAGCCGTACTGGGGCTATTGCTGGAGGGGTTGCTGCTGGTGCTGCTTTGCTGTTTGCTGCCCCTGCAATTGCACTTGCTTGGTGGCGACGAAGAAAACCACAGGATCATTTCTTTGATGTACCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0008219 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010008 GO:0010033 GO:0010200 GO:0010243 GO:0010941 GO:0012505 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031090 GO:0031410 GO:0031982 GO:0032870 GO:0033612 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048545 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0060089 GO:0060548 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0140096 GO:1900140 GO:1901564 GO:1901698 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

263

Amino Acids

28.14

Weight (kDa)

6.09

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	26 - 65	1.4e-12	Leucine rich repeat N-terminal domain
LRR_14	PF23598	74 - 173	1.1e-12	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13790 AT2G13800 AT2G13800 AT2G13800 AT2G13800 AT4G33430 AT4G33430
fragaria_vesca	FvH4_5g30840 FvH4_5g30840
malus_domestica	MD08G1221700.v1.1 MD15G1412700.v1.1 MD15G1413000.v1.1 MD15G1413200.v1.1 MD15G1413300.v1.1 MD15G1414000.v1.1
prunus_persica	Prupe.1G558800_v2.0.a1 Prupe.1G558900_v2.0.a1 Prupe.1G558900_v2.0.a1 Prupe.1G558900_v2.0.a1
pyrus_communis	pycom08g19230 pycom15g36730 pycom15g36740 pycom15g36780 pycom15g36820
rosa_chinensis	RchiOBHm_Chr7g0225981
rosa_laevigata	RLG00000001775
rosa_multiflora	Rmu_sc0002092.1_g000002 Rmu_sc0014767.1_g000001
rosa_roxburghii	Rroxscaffold_3G00233340
rosa_rugosa	Rorug07G0233900
rosa_samantha	Rh7AG369400 Rh7BG367900 Rh7CG387800 Rh7DG378900
rosa_wichuraiana	Rw0G020960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	11
AciI	CCGC	4 cut(s)	9, 72, 315, 339
AclWI	GGATC	6 cut(s)	116, 143, 156, 372, 516, 774
AcoI	YGGCCR	1 cut(s)	388
AcsI	RAATTY	2 cut(s)	393, 465
AcvI	CACGTG	1 cut(s)	174
AfaI	GTAC	4 cut(s)	287, 319, 670, 783
AfiI	CCNNNNNNNGG	6 cut(s)	145, 174, 459, 548, 656, 673
AgsI	TTSAA	7 cut(s)	53, 97, 106, 346, 376, 419, 516
AjnI	CCWGG	3 cut(s)	249, 504, 784
AjuI	GAANNNNNNNTTGG	4 cut(s)	98, 130, 637, 669
AluBI	AGCT	4 cut(s)	262, 334, 360, 424
AluI	AGCT	4 cut(s)	262, 334, 360, 424
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	2 cut(s)	73, 443
AlwI	GGATC	6 cut(s)	116, 143, 156, 372, 516, 774
AoxI	GGCC	2 cut(s)	18, 388
ApeKI	GCWGC	5 cut(s)	259, 424, 695, 704, 719
ApoI	RAATTY	2 cut(s)	393, 465
ArsI	GACNNNNNNTTYG	2 cut(s)	192, 224
AsuHPI	GGTGA	3 cut(s)	98, 202, 265
BalI	TGGCCA	1 cut(s)	390
BamHI	GGATCC	1 cut(s)	148
BbrPI	CACGTG	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	5 cut(s)	271, 411, 682, 691, 706
BccI	CCATC	4 cut(s)	380, 406, 581, 628
BceAI	ACGGC	1 cut(s)	651
BciT130I	CCWGG	3 cut(s)	251, 506, 786
BcoDI	GTCTC	2 cut(s)	73, 443
BfaI	CTAG	1 cut(s)	353
BisI	GCNGC	5 cut(s)	260, 425, 696, 705, 720
BlsI	GCNGC	5 cut(s)	261, 426, 697, 706, 721
BmcAI	AGTACT	1 cut(s)	287
Bme1390I	CCNGG	3 cut(s)	251, 506, 786
BmiI	GGNNCC	3 cut(s)	150, 179, 553
BmrFI	CCNGG	3 cut(s)	251, 506, 786
BmrI	ACTGGG	1 cut(s)	681
BmsI	GCATC	1 cut(s)	500
BmuI	ACTGGG	1 cut(s)	681
BpmI	CTGGAG	3 cut(s)	122, 552, 705
BsaAI	YACGTR	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	73
BsaJI	CCNNGG	1 cut(s)	15
BsaWI	WCCGGW	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	6 cut(s)	145, 174, 459, 548, 656, 673
Bse1I	ACTGG	2 cut(s)	535, 676
Bse3DI	GCAATG	2 cut(s)	235, 494
BseBI	CCWGG	3 cut(s)	251, 506, 786
BseDI	CCNNGG	1 cut(s)	15
BseLI	CCNNNNNNNGG	6 cut(s)	145, 174, 459, 548, 656, 673
BseMI	GCAATG	2 cut(s)	235, 494
BseNI	ACTGG	2 cut(s)	535, 676
BseRI	GAGGAG	1 cut(s)	615
BseXI	GCAGC	5 cut(s)	271, 411, 682, 691, 706
BsgI	GTGCAG	1 cut(s)	154
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	2 cut(s)	20, 390
BsiHKAI	GWGCWC	1 cut(s)	273
BsiSI	CCGG	1 cut(s)	243
BslI	CCNNNNNNNGG	6 cut(s)	145, 174, 459, 548, 656, 673
BsmAI	GTCTC	2 cut(s)	73, 443
BsmBI	CGTCTC	1 cut(s)	443
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	2 cut(s)	20, 390
Bso31I	GGTCTC	1 cut(s)	73
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	7 cut(s)	121, 148, 220, 364, 508, 543, 766
BspACI	CCGC	4 cut(s)	9, 72, 315, 339
BspANI	GGCC	2 cut(s)	20, 390
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	3 cut(s)	150, 179, 553
BspPI	GGATC	6 cut(s)	116, 143, 156, 372, 516, 774
BspQI	GCTCTTC	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	73
BsrDI	GCAATG	2 cut(s)	235, 494
BsrI	ACTGG	2 cut(s)	535, 676
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	7 cut(s)	121, 148, 220, 364, 508, 543, 766
BssT1I	CCWWGG	1 cut(s)	15
Bst2UI	CCWGG	3 cut(s)	251, 506, 786
Bst4CI	ACNGT	1 cut(s)	285
Bst6I	CTCTTC	2 cut(s)	44, 101
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstBAI	YACGTR	1 cut(s)	174
BstEII	GGTNACC	1 cut(s)	245
BstENI	CCTNNNNNAGG	1 cut(s)	654
BstFNI	CGCG	1 cut(s)	11
BstKTI	GATC	7 cut(s)	124, 151, 223, 367, 511, 546, 769
BstMAI	GTCTC	2 cut(s)	73, 443
BstMBI	GATC	7 cut(s)	121, 148, 220, 364, 508, 543, 766
BstMWI	GCNNNNNNNGC	7 cut(s)	17, 98, 268, 433, 701, 704, 725
BstNI	CCWGG	3 cut(s)	251, 506, 786
BstPI	GGTNACC	1 cut(s)	245
BstSCI	CCNGG	3 cut(s)	249, 504, 784
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	5 cut(s)	271, 411, 682, 691, 706
BstX2I	RGATCY	3 cut(s)	148, 364, 508
BstYI	RGATCY	3 cut(s)	148, 364, 508
BsuRI	GGCC	2 cut(s)	20, 390
CseI	GACGC	3 cut(s)	98, 196, 425
CsiI	ACCWGGT	2 cut(s)	249, 784
Csp6I	GTAC	4 cut(s)	286, 318, 669, 782
CviAII	CATG	1 cut(s)	182
CviQI	GTAC	4 cut(s)	286, 318, 669, 782
DpnI	GATC	7 cut(s)	123, 150, 222, 366, 510, 545, 768
DpnII	GATC	7 cut(s)	121, 148, 220, 364, 508, 543, 766
EaeI	YGGCCR	1 cut(s)	388
Eam1104I	CTCTTC	2 cut(s)	44, 101
EarI	CTCTTC	2 cut(s)	44, 101
EciI	GGCGGA	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	15
Eco147I	AGGCCT	1 cut(s)	20
Eco31I	GGTCTC	1 cut(s)	73
Eco72I	CACGTG	1 cut(s)	174
Eco91I	GGTNACC	1 cut(s)	245
EcoNI	CCTNNNNNAGG	1 cut(s)	654
EcoO65I	GGTNACC	1 cut(s)	245
EcoRII	CCWGG	3 cut(s)	249, 504, 784
EcoT14I	CCWWGG	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	15
Esp3I	CGTCTC	1 cut(s)	443
FaeI	CATG	1 cut(s)	185
FaiI	YATR	3 cut(s)	183, 300, 311
FatI	CATG	1 cut(s)	181
Fnu4HI	GCNGC	5 cut(s)	260, 425, 696, 705, 720
Fsp4HI	GCNGC	5 cut(s)	260, 425, 696, 705, 720
FspBI	CTAG	1 cut(s)	353
GluI	GCNGC	5 cut(s)	260, 425, 696, 705, 720
GsuI	CTGGAG	3 cut(s)	122, 552, 705
HaeIII	GGCC	2 cut(s)	20, 390
HapII	CCGG	1 cut(s)	243
HgaI	GACGC	3 cut(s)	98, 196, 425
Hin1II	CATG	1 cut(s)	185
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	3 cut(s)	98, 202, 265
Hpy188I	TCNGA	4 cut(s)	199, 266, 543, 600
Hpy188III	TCNNGA	2 cut(s)	139, 611
Hpy99I	CGWCG	2 cut(s)	83, 753
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	1 cut(s)	285
HpyCH4IV	ACGT	2 cut(s)	78, 173
HpyCH4V	TGCA	6 cut(s)	171, 192, 491, 499, 728, 734
HpyF10VI	GCNNNNNNNGC	7 cut(s)	17, 98, 268, 433, 701, 704, 725
HpySE526I	ACGT	2 cut(s)	78, 173
Hsp92II	CATG	1 cut(s)	185
Kzo9I	GATC	7 cut(s)	121, 148, 220, 364, 508, 543, 766
LguI	GCTCTTC	1 cut(s)	101
Lsp1109I	GCAGC	5 cut(s)	271, 411, 682, 691, 706
LweI	GCATC	1 cut(s)	500
MabI	ACCWGGT	2 cut(s)	249, 784
MaeI	CTAG	1 cut(s)	353
MaeII	ACGT	2 cut(s)	78, 173
MaeIII	GTNAC	6 cut(s)	86, 184, 208, 245, 253, 659
MalI	GATC	7 cut(s)	123, 150, 222, 366, 510, 545, 768
MboI	GATC	7 cut(s)	121, 148, 220, 364, 508, 543, 766
MboII	GAAGA	5 cut(s)	23, 31, 41, 118, 765
MfeI	CAATTG	1 cut(s)	729
MflI	RGATCY	3 cut(s)	148, 364, 508
MhlI	GDGCHC	1 cut(s)	273
MlsI	TGGCCA	1 cut(s)	390
MluCI	AATT	5 cut(s)	277, 380, 393, 465, 729
MluNI	TGGCCA	1 cut(s)	390
MmeI	TCCRAC	1 cut(s)	350
MnlI	CCTC	4 cut(s)	31, 603, 636, 680
Mox20I	TGGCCA	1 cut(s)	390
MscI	TGGCCA	1 cut(s)	390
Msp20I	TGGCCA	1 cut(s)	390
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	3 cut(s)	251, 506, 786
MunI	CAATTG	1 cut(s)	729
Mva1269I	GAATGC	1 cut(s)	103
MvaI	CCWGG	3 cut(s)	251, 506, 786
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	7 cut(s)	17, 98, 268, 433, 701, 704, 725
NdeII	GATC	7 cut(s)	121, 148, 220, 364, 508, 543, 766
NlaIII	CATG	1 cut(s)	185
NlaIV	GGNNCC	3 cut(s)	150, 179, 553
NmuCI	GTSAC	3 cut(s)	86, 184, 208
PceI	AGGCCT	1 cut(s)	20
PciSI	GCTCTTC	1 cut(s)	101
PctI	GAATGC	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	28
PfoI	TCCNGGA	1 cut(s)	504
PkrI	GCNGC	5 cut(s)	261, 426, 697, 706, 721
PmaCI	CACGTG	1 cut(s)	174
PmlI	CACGTG	1 cut(s)	174
Ppu21I	YACGTR	1 cut(s)	174
Psp6I	CCWGG	3 cut(s)	249, 504, 784
PspCI	CACGTG	1 cut(s)	174
PspEI	GGTNACC	1 cut(s)	245
PspGI	CCWGG	3 cut(s)	249, 504, 784
PspN4I	GGNNCC	3 cut(s)	150, 179, 553
PsuI	RGATCY	3 cut(s)	148, 364, 508
RsaI	GTAC	4 cut(s)	287, 319, 670, 783
RsaNI	GTAC	4 cut(s)	286, 318, 669, 782
SapI	GCTCTTC	1 cut(s)	101
SatI	GCNGC	5 cut(s)	260, 425, 696, 705, 720
Sau3AI	GATC	7 cut(s)	121, 148, 220, 364, 508, 543, 766
ScaI	AGTACT	1 cut(s)	287
ScrFI	CCNGG	3 cut(s)	251, 506, 786
SduI	GDGCHC	1 cut(s)	273
SexAI	ACCWGGT	2 cut(s)	249, 784
SfaNI	GCATC	1 cut(s)	500
Sse9I	AATT	5 cut(s)	277, 380, 393, 465, 729
SseBI	AGGCCT	1 cut(s)	20
SsiI	CCGC	4 cut(s)	9, 72, 315, 339
SspI	AATATT	1 cut(s)	487
SspMI	CTAG	1 cut(s)	353
StuI	AGGCCT	1 cut(s)	20
StyD4I	CCNGG	3 cut(s)	249, 504, 784
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	285
TaiI	ACGT	2 cut(s)	81, 176
TaqI	TCGA	1 cut(s)	81
TasI	AATT	5 cut(s)	277, 380, 393, 465, 729
TatI	WGTACW	1 cut(s)	285
TfiI	GAWTC	1 cut(s)	28
TseFI	GTSAC	3 cut(s)	86, 184, 208
TseI	GCWGC	5 cut(s)	259, 424, 695, 704, 719
Tsp45I	GTSAC	3 cut(s)	86, 184, 208
XagI	CCTNNNNNAGG	1 cut(s)	654
XapI	RAATTY	2 cut(s)	393, 465
XspI	CTAG	1 cut(s)	353
ZrmI	AGTACT	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.