Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003522

Physical Location & Seq

Genomic Coordinates Forward (+)

36696769 .. 36700337

Gene Structure 3569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g36730.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAACCCAACAGCGATGACGTCCTCCGCCTCTGTTTCTGTTTGGCTGATTCTGCTGTTTGGCTTCTTTCACCTCCATAAGCTTGCTGCCAACGTAGAAGGTGACGCATTGAACGCGTTGAAGACCACTCTAGCTGATCCAAACAATGTTCTGCAGAGTTGGGATCCGACTCTCGTCAATCCCTGCACCTGGTTTCATGTCACTTGTAATAGCGAAAACAGTGTTACTCGAGTTGATCTTGGCAATGCCAATCTCTCTGGTCAATTGGTTACACAGCTTGGTGTGCTTTCCAAGTTGCAGTACTTGGAACTTTACAGTAATAACATAACTGGAACCATTCCCGAAGAGCTTGGGGGTTTGGCAGACTTGGTCAGTTTGGATCTTTACTTGAACAAGTTACATGGTTCCATTCCAGCGACACTTGGCAACCTTGCAAAACTACGTTTCCTGCGTCTCAACAACAACACCTTGTCAGGGACTATTCCCGTGACTTTGACTAACATCCTATCATTGCAAGTCCTGGATCTATCAAATAACAAGCTGACAGGGGATATTCCAGTCAATCGATCTTTTTCACTTTTTACTCCCATCAGTTTTGCCAATAATCCTCTGAAACCACTTCCACCCTCTCCATCTCCTCCTGTTTCTCCGAACCCACCAAGTTCTCCAGGTGCCACTGCTACTGGGGCTATTGCTGGAGGGGTTGCTGCTGGTGCTGCTTTGCTATTTGCTGCACCTGCAATTGCACTTGCTTATTGGCGACGAAGAAAACCACAGGATAATTTCTTTGATGTACCTGCTGAGGAGGATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0008219 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010008 GO:0010033 GO:0010200 GO:0010243 GO:0010941 GO:0012505 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031090 GO:0031410 GO:0031982 GO:0032870 GO:0033612 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048545 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0060089 GO:0060548 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0140096 GO:1900140 GO:1901564 GO:1901698 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

272

Amino Acids

28.82

Weight (kDa)

5.76

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13790 AT2G13800 AT2G13800 AT2G13800 AT2G13800 AT4G33430 AT4G33430
fragaria_vesca	FvH4_5g30840 FvH4_5g30840
malus_domestica	MD08G1221700.v1.1 MD15G1412700.v1.1 MD15G1413000.v1.1 MD15G1413200.v1.1 MD15G1413300.v1.1 MD15G1414000.v1.1
prunus_persica	Prupe.1G558800_v2.0.a1 Prupe.1G558900_v2.0.a1 Prupe.1G558900_v2.0.a1 Prupe.1G558900_v2.0.a1
pyrus_communis	pycom08g19230 pycom15g36730 pycom15g36740 pycom15g36780 pycom15g36820
rosa_chinensis	RchiOBHm_Chr7g0225981
rosa_laevigata	RLG00000001775
rosa_multiflora	Rmu_sc0002092.1_g000002 Rmu_sc0014767.1_g000001
rosa_roxburghii	Rroxscaffold_3G00233340
rosa_rugosa	Rorug07G0233900
rosa_samantha	Rh7AG369400 Rh7BG367900 Rh7CG387800 Rh7DG378900
rosa_wichuraiana	Rw0G020960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	745
AatII	GACGTC	1 cut(s)	23
Acc36I	ACCTGC	2 cut(s)	745, 805
AccB1I	GGYRCC	1 cut(s)	671
AccII	CGCG	1 cut(s)	116
AciI	CCGC	1 cut(s)	27
AclWI	GGATC	6 cut(s)	131, 158, 171, 387, 531, 803
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	2 cut(s)	302, 795
AfiI	CCNNNNNNNGG	2 cut(s)	189, 474
AflIII	ACRYGT	1 cut(s)	114
AgsI	TTSAA	3 cut(s)	112, 121, 391
AjnI	CCWGG	3 cut(s)	188, 519, 667
AluBI	AGCT	5 cut(s)	82, 134, 277, 349, 541
AluI	AGCT	5 cut(s)	82, 134, 277, 349, 541
Alw26I	GTCTC	1 cut(s)	458
AlwI	GGATC	6 cut(s)	131, 158, 171, 387, 531, 803
Ama87I	CYCGRG	1 cut(s)	228
ApeKI	GCWGC	4 cut(s)	86, 707, 716, 731
AsuHPI	GGTGA	2 cut(s)	62, 113
AvaI	CYCGRG	1 cut(s)	228
BamHI	GGATCC	2 cut(s)	163, 808
BanI	GGYRCC	1 cut(s)	671
BbsI	GAAGAC	1 cut(s)	128
BbvCI	CCTCAGC	1 cut(s)	801
BbvI	GCAGC	4 cut(s)	73, 694, 703, 718
BccI	CCATC	2 cut(s)	596, 640
BciT130I	CCWGG	3 cut(s)	190, 521, 669
BcoDI	GTCTC	1 cut(s)	458
BfaI	CTAG	1 cut(s)	131
BfmI	CTRYAG	1 cut(s)	152
BfuAI	ACCTGC	2 cut(s)	745, 805
BisI	GCNGC	4 cut(s)	87, 708, 717, 732
BlsI	GCNGC	4 cut(s)	88, 709, 718, 733
BmcAI	AGTACT	1 cut(s)	302
Bme1390I	CCNGG	3 cut(s)	190, 521, 669
BmeT110I	CYCGRG	1 cut(s)	228
BmiI	GGNNCC	5 cut(s)	165, 334, 406, 673, 810
BmrFI	CCNGG	3 cut(s)	190, 521, 669
BmrI	ACTGGG	1 cut(s)	693
BmuI	ACTGGG	1 cut(s)	693
BoxI	GACNNNNGTC	1 cut(s)	173
BpiI	GAAGAC	1 cut(s)	128
BpmI	CTGGAG	2 cut(s)	651, 717
Bpu10I	CCTNAGC	1 cut(s)	801
Bsa29I	ATCGAT	1 cut(s)	565
BsaHI	GRCGYC	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	2 cut(s)	189, 474
Bse1I	ACTGG	3 cut(s)	334, 557, 688
Bse3DI	GCAATG	2 cut(s)	250, 509
BseBI	CCWGG	3 cut(s)	190, 521, 669
BseCI	ATCGAT	1 cut(s)	565
BseGI	GGATG	1 cut(s)	501
BseLI	CCNNNNNNNGG	2 cut(s)	189, 474
BseMI	GCAATG	2 cut(s)	250, 509
BseMII	CTCAG	1 cut(s)	792
BseNI	ACTGG	3 cut(s)	334, 557, 688
BseRI	GAGGAG	1 cut(s)	627
BseXI	GCAGC	4 cut(s)	73, 694, 703, 718
BsgI	GTGCAG	2 cut(s)	169, 717
Bsh1236I	CGCG	1 cut(s)	116
BshNI	GGYRCC	1 cut(s)	671
BshVI	ATCGAT	1 cut(s)	565
BsiHKCI	CYCGRG	1 cut(s)	228
BslFI	GGGAC	1 cut(s)	490
BslI	CCNNNNNNNGG	2 cut(s)	189, 474
BsmAI	GTCTC	1 cut(s)	458
BsmBI	CGTCTC	1 cut(s)	458
BsmFI	GGGAC	1 cut(s)	490
BsoBI	CYCGRG	1 cut(s)	228
Bsp143I	GATC	7 cut(s)	136, 163, 235, 379, 523, 566, 808
BspACI	CCGC	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	793
BspDI	ATCGAT	1 cut(s)	565
BspFNI	CGCG	1 cut(s)	116
BspLI	GGNNCC	5 cut(s)	165, 334, 406, 673, 810
BspMAI	CTGCAG	1 cut(s)	156
BspMI	ACCTGC	2 cut(s)	745, 805
BspPI	GGATC	6 cut(s)	131, 158, 171, 387, 531, 803
BspQI	GCTCTTC	1 cut(s)	339
BspT107I	GGYRCC	1 cut(s)	671
BsrDI	GCAATG	2 cut(s)	250, 509
BsrI	ACTGG	3 cut(s)	334, 557, 688
BssMI	GATC	7 cut(s)	136, 163, 235, 379, 523, 566, 808
BssNI	GRCGYC	1 cut(s)	20
Bst2UI	CCWGG	3 cut(s)	190, 521, 669
Bst4CI	ACNGT	2 cut(s)	221, 317
Bst6I	CTCTTC	1 cut(s)	339
BstACI	GRCGYC	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	801
BstF5I	GGATG	1 cut(s)	501
BstFNI	CGCG	1 cut(s)	116
BstKTI	GATC	7 cut(s)	139, 166, 238, 382, 526, 569, 811
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	7 cut(s)	136, 163, 235, 379, 523, 566, 808
BstMWI	GCNNNNNNNGC	7 cut(s)	52, 113, 283, 686, 713, 716, 737
BstNI	CCWGG	3 cut(s)	190, 521, 669
BstPAI	GACNNNNGTC	1 cut(s)	173
BstSCI	CCNGG	3 cut(s)	188, 519, 667
BstSFI	CTRYAG	1 cut(s)	152
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	4 cut(s)	73, 694, 703, 718
BstV2I	GAAGAC	1 cut(s)	128
BstX2I	RGATCY	4 cut(s)	163, 379, 523, 808
BstYI	RGATCY	4 cut(s)	163, 379, 523, 808
Bsu15I	ATCGAT	1 cut(s)	565
BsuTUI	ATCGAT	1 cut(s)	565
BtgZI	GCGATG	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	501
BtsI	GCAGTG	1 cut(s)	675
BtsIMutI	CAGTG	2 cut(s)	226, 675
BveI	ACCTGC	2 cut(s)	745, 805
Cac8I	GCNNGC	1 cut(s)	84
ClaI	ATCGAT	1 cut(s)	565
CseI	GACGC	2 cut(s)	113, 440
CsiI	ACCWGGT	1 cut(s)	188
Csp6I	GTAC	2 cut(s)	301, 794
CviAII	CATG	3 cut(s)	197, 401, 813
CviJI	RGCY	8 cut(s)	46, 63, 82, 134, 277, 349, 541, 689
CviKI_1	RGCY	8 cut(s)	46, 63, 82, 134, 277, 349, 541, 689
CviQI	GTAC	2 cut(s)	301, 794
DdeI	CTNAG	1 cut(s)	801
DpnI	GATC	7 cut(s)	138, 165, 237, 381, 525, 568, 810
DpnII	GATC	7 cut(s)	136, 163, 235, 379, 523, 566, 808
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
EciI	GGCGGA	1 cut(s)	16
Eco88I	CYCGRG	1 cut(s)	228
EcoRII	CCWGG	3 cut(s)	188, 519, 667
Esp3I	CGTCTC	1 cut(s)	458
FaeI	CATG	3 cut(s)	200, 404, 816
FaiI	YATR	5 cut(s)	78, 198, 326, 402, 814
FaqI	GGGAC	1 cut(s)	490
FatI	CATG	3 cut(s)	196, 400, 812
Fnu4HI	GCNGC	4 cut(s)	87, 708, 717, 732
FokI	GGATG	1 cut(s)	488
Fsp4HI	GCNGC	4 cut(s)	87, 708, 717, 732
FspBI	CTAG	1 cut(s)	131
GluI	GCNGC	4 cut(s)	87, 708, 717, 732
GsuI	CTGGAG	2 cut(s)	651, 717
HgaI	GACGC	2 cut(s)	113, 440
Hin1I	GRCGYC	1 cut(s)	20
Hin1II	CATG	3 cut(s)	200, 404, 816
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	2 cut(s)	49, 169
HphI	GGTGA	2 cut(s)	62, 113
Hpy188I	TCNGA	3 cut(s)	168, 612, 651
Hpy188III	TCNNGA	1 cut(s)	341
Hpy99I	CGWCG	1 cut(s)	765
HpyAV	CCTTC	1 cut(s)	92
HpyCH4III	ACNGT	2 cut(s)	221, 317
HpyCH4IV	ACGT	3 cut(s)	20, 93, 442
HpyCH4V	TGCA	8 cut(s)	154, 186, 298, 434, 514, 734, 740, 746
HpyF10VI	GCNNNNNNNGC	7 cut(s)	52, 113, 283, 686, 713, 716, 737
HpyF3I	CTNAG	1 cut(s)	801
HpySE526I	ACGT	3 cut(s)	20, 93, 442
Hsp92I	GRCGYC	1 cut(s)	20
Hsp92II	CATG	3 cut(s)	200, 404, 816
Kzo9I	GATC	7 cut(s)	136, 163, 235, 379, 523, 566, 808
LguI	GCTCTTC	1 cut(s)	339
Lsp1109I	GCAGC	4 cut(s)	73, 694, 703, 718
MabI	ACCWGGT	1 cut(s)	188
MaeI	CTAG	1 cut(s)	131
MaeII	ACGT	3 cut(s)	20, 93, 442
MaeIII	GTNAC	6 cut(s)	101, 199, 223, 268, 396, 487
MalI	GATC	7 cut(s)	138, 165, 237, 381, 525, 568, 810
MboI	GATC	7 cut(s)	136, 163, 235, 379, 523, 566, 808
MboII	GAAGA	3 cut(s)	133, 356, 777
MfeI	CAATTG	2 cut(s)	263, 741
MflI	RGATCY	4 cut(s)	163, 379, 523, 808
MluCI	AATT	3 cut(s)	263, 741, 781
MluI	ACGCGT	1 cut(s)	114
MlyI	GAGTC	1 cut(s)	163
MmeI	TCCRAC	1 cut(s)	191
MnlI	CCTC	9 cut(s)	34, 40, 83, 618, 637, 648, 692, 796, 799
MspR9I	CCNGG	3 cut(s)	190, 521, 669
MunI	CAATTG	2 cut(s)	263, 741
MvaI	CCWGG	3 cut(s)	190, 521, 669
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	7 cut(s)	52, 113, 283, 686, 713, 716, 737
NdeII	GATC	7 cut(s)	136, 163, 235, 379, 523, 566, 808
NlaIII	CATG	3 cut(s)	200, 404, 816
NlaIV	GGNNCC	5 cut(s)	165, 334, 406, 673, 810
NmuCI	GTSAC	3 cut(s)	101, 199, 487
PaeR7I	CTCGAG	1 cut(s)	228
PaqCI	CACCTGC	1 cut(s)	745
PciSI	GCTCTTC	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	1 cut(s)	448
PfeI	GAWTC	1 cut(s)	49
PflFI	GACNNNGTC	1 cut(s)	368
PfoI	TCCNGGA	1 cut(s)	519
PkrI	GCNGC	4 cut(s)	88, 709, 718, 733
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PshAI	GACNNNNGTC	1 cut(s)	173
Psp6I	CCWGG	3 cut(s)	188, 519, 667
PspGI	CCWGG	3 cut(s)	188, 519, 667
PspN4I	GGNNCC	5 cut(s)	165, 334, 406, 673, 810
PspXI	VCTCGAGB	1 cut(s)	228
PstI	CTGCAG	1 cut(s)	156
PsuI	RGATCY	4 cut(s)	163, 379, 523, 808
PsyI	GACNNNGTC	1 cut(s)	368
RsaI	GTAC	2 cut(s)	302, 795
RsaNI	GTAC	2 cut(s)	301, 794
SapI	GCTCTTC	1 cut(s)	339
SatI	GCNGC	4 cut(s)	87, 708, 717, 732
Sau3AI	GATC	7 cut(s)	136, 163, 235, 379, 523, 566, 808
ScaI	AGTACT	1 cut(s)	302
SchI	GAGTC	1 cut(s)	163
ScrFI	CCNGG	3 cut(s)	190, 521, 669
SexAI	ACCWGGT	1 cut(s)	188
SfcI	CTRYAG	1 cut(s)	152
Sfr274I	CTCGAG	1 cut(s)	228
SlaI	CTCGAG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	228
SmoI	CTYRAG	1 cut(s)	228
Sse9I	AATT	3 cut(s)	263, 741, 781
SsiI	CCGC	1 cut(s)	27
SspMI	CTAG	1 cut(s)	131
StyD4I	CCNGG	3 cut(s)	188, 519, 667
TaaI	ACNGT	2 cut(s)	221, 317
TaiI	ACGT	3 cut(s)	23, 96, 445
TaqI	TCGA	2 cut(s)	229, 565
TasI	AATT	3 cut(s)	263, 741, 781
TatI	WGTACW	1 cut(s)	300
TfiI	GAWTC	1 cut(s)	49
TscAI	CASTG	2 cut(s)	226, 682
TseFI	GTSAC	3 cut(s)	101, 199, 487
TseI	GCWGC	4 cut(s)	86, 707, 716, 731
Tsp45I	GTSAC	3 cut(s)	101, 199, 487
TspDTI	ATGAA	2 cut(s)	17, 185
TspRI	CASTG	2 cut(s)	226, 682
Tth111I	GACNNNGTC	1 cut(s)	368
XhoI	CTCGAG	1 cut(s)	228
XspI	CTAG	1 cut(s)	131
ZraI	GACGTC	1 cut(s)	21
ZrmI	AGTACT	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.