Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003522

Physical Location & Seq

Genomic Coordinates Forward (+)

51262932 .. 51267354

Gene Structure 4423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1413000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGGTGCCAAGTACTGGGGCTATTTCTGGAGGGGGGCTATTGCTGGAGGGGTTGCTGCTGGTTCTGCTTTCCTGTTTGCTGCACTTGCAATTGCATTTGCTTATTGTCGACGAAGAAAATCACAGGATTATTTCTTTGATGAACCTGCTGAGAAGGATCCAGAAGTTCATTTACGACAGTTCAAAAGGTTTTCTTTGAGCGAGCTACAAGTTGCGACGGATACCTTTAGCGACAAAAATATTCTTGGTAGTGGTGGATTTGGTAAGGTTTATAAAGGACGCTTAGATGATGGAACTCTGGTTGCTGTAAAAAGACTTAAAGAGGAGAGAACCCAAGGCGGGGAGCTACAGTTCCAAACAGAAGTTGAAATGATTAGCATGGCTGTCCACCGCAATCTGCTTCGTGTGCATGGTTTTTGCACGACACCAACAGAAAGGCTGCTTGTATATCCTTTTATGGCCAATGGAAGTGTGGCATCATGTTTAAGAGATCGTCCAGAAGGACAACCTGCACTTGATTGGCCAATAAGACAACGCATTGCATTGGGATCTGCAAAAGGTCTTGCTTATTTACATGATCACTGTGATCCAAAAATTATTCACCGTGATGTGAAAGCAGCAAACATATTGTTGGATGTGGAATTCGAAGCAGTTGTTGGAGACTTTGGGTTGGCTAAACTCATGGACTACAGGGATACACATGTTACCACAGCTGTACGTGGCACAATTGGTCATATAGCACCAGAGTACTTTTCAACTGGAAAATGTTCCGAGAAAACTGATGTTTTTGGATACGGAGTCATGCTTCTTGAACTCATCACTGGGCAGAGGGCTTTTGATCCTCAGCTTGCGAGTCATGATGACCCCATGTTAGTTGATTGGGTCAAAAGACTACTGAAAGATCGAAGGTTGGAAACACTTGTTGATGCTGATCTAAATGGTAATTATGTTGACGATCAAGTGGAGCAGCTCATCCAAGTAGCTCTACTGTGCACACAAGGCACCCCAGGGGAACGACCCAAGATGTCAGAGGTTGTTCGGATGCTGGAAGGCAATGGTTTGGCTGAAAGATGGGAGGAGTGGCAAAAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0008219 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010008 GO:0010033 GO:0010200 GO:0010243 GO:0010941 GO:0012505 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031090 GO:0031410 GO:0031982 GO:0032870 GO:0033612 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048545 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0060089 GO:0060548 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0140096 GO:1900140 GO:1901564 GO:1901698 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

365

Amino Acids

40.9

Weight (kDa)

5.91

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	77 - 346	2.4e-41	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	80 - 349	4.3e-44	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13790 AT2G13800 AT2G13800 AT2G13800 AT2G13800 AT4G33430 AT4G33430
fragaria_vesca	FvH4_5g30840 FvH4_5g30840
malus_domestica	MD08G1221700.v1.1 MD15G1412700.v1.1 MD15G1413000.v1.1 MD15G1413200.v1.1 MD15G1413300.v1.1 MD15G1414000.v1.1
prunus_persica	Prupe.1G558800_v2.0.a1 Prupe.1G558900_v2.0.a1 Prupe.1G558900_v2.0.a1 Prupe.1G558900_v2.0.a1
pyrus_communis	pycom08g19230 pycom15g36730 pycom15g36740 pycom15g36780 pycom15g36820
rosa_chinensis	RchiOBHm_Chr7g0225981
rosa_laevigata	RLG00000001775
rosa_multiflora	Rmu_sc0002092.1_g000002 Rmu_sc0014767.1_g000001
rosa_roxburghii	Rroxscaffold_3G00233340
rosa_rugosa	Rorug07G0233900
rosa_samantha	Rh7AG369400 Rh7BG367900 Rh7CG387800 Rh7DG378900
rosa_wichuraiana	Rw0G020960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	273
Acc36I	ACCTGC	2 cut(s)	154, 517
AccB1I	GGYRCC	2 cut(s)	5, 1001
AccB7I	CCANNNNNTGG	1 cut(s)	15
AccI	GTMKAC	1 cut(s)	109
AciI	CCGC	2 cut(s)	339, 391
AclWI	GGATC	5 cut(s)	152, 165, 556, 581, 833
AcoI	YGGCCR	2 cut(s)	459, 521
AcsI	RAATTY	1 cut(s)	641
AfaI	GTAC	3 cut(s)	14, 717, 749
AfiI	CCNNNNNNNGG	3 cut(s)	15, 339, 340
AflIII	ACRYGT	1 cut(s)	700
AgsI	TTSAA	4 cut(s)	184, 368, 756, 812
AjnI	CCWGG	1 cut(s)	1006
AjuI	GAANNNNNNNTTGG	2 cut(s)	639, 671
AloI	GAACNNNNNNTCC	2 cut(s)	335, 367
AluBI	AGCT	6 cut(s)	205, 346, 713, 847, 970, 983
AluI	AGCT	6 cut(s)	205, 346, 713, 847, 970, 983
Alw21I	GWGCWC	1 cut(s)	995
Alw26I	GTCTC	1 cut(s)	654
Alw44I	GTGCAC	1 cut(s)	991
AlwI	GGATC	5 cut(s)	152, 165, 556, 581, 833
AoxI	GGCC	2 cut(s)	459, 521
ApaLI	GTGCAC	1 cut(s)	991
ApeKI	GCWGC	5 cut(s)	56, 80, 439, 617, 967
ApoI	RAATTY	1 cut(s)	641
Asp700I	GAANNNNTTC	1 cut(s)	766
AsuHPI	GGTGA	1 cut(s)	593
AsuII	TTCGAA	1 cut(s)	645
BaeGI	GKGCMC	1 cut(s)	995
BaeI	ACNNNNGTAYC	2 cut(s)	687, 720
BalI	TGGCCA	2 cut(s)	461, 523
BamHI	GGATCC	1 cut(s)	157
BanI	GGYRCC	2 cut(s)	5, 1001
BarI	GAAGNNNNNNTAC	2 cut(s)	156, 188
Bbv12I	GWGCWC	1 cut(s)	995
BbvCI	CCTCAGC	1 cut(s)	843
BbvI	GCAGC	5 cut(s)	43, 67, 426, 629, 979
BccI	CCATC	2 cut(s)	284, 1065
BciT130I	CCWGG	1 cut(s)	1008
BciVI	GTATCC	3 cut(s)	214, 688, 785
BclI	TGATCA	1 cut(s)	577
BcoDI	GTCTC	1 cut(s)	654
BfmI	CTRYAG	2 cut(s)	347, 688
BfuAI	ACCTGC	2 cut(s)	154, 517
BfuI	GTATCC	3 cut(s)	214, 688, 785
BisI	GCNGC	5 cut(s)	57, 81, 440, 618, 968
BlsI	GCNGC	5 cut(s)	58, 82, 441, 619, 969
BmcAI	AGTACT	2 cut(s)	14, 749
Bme1390I	CCNGG	1 cut(s)	1008
BmiI	GGNNCC	3 cut(s)	7, 159, 1003
BmrFI	CCNGG	1 cut(s)	1008
BmrI	ACTGGG	2 cut(s)	25, 831
BmsI	GCATC	3 cut(s)	485, 916, 1032
BmuI	ACTGGG	2 cut(s)	25, 831
BpmI	CTGGAG	2 cut(s)	49, 66
Bpu10I	CCTNAGC	1 cut(s)	843
Bpu14I	TTCGAA	1 cut(s)	645
BsaAI	YACGTR	1 cut(s)	719
BsaBI	GATNNNNATC	1 cut(s)	930
BsaJI	CCNNGG	3 cut(s)	334, 1006, 1007
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 339, 340
Bse1I	ACTGG	3 cut(s)	20, 763, 826
Bse3DI	GCAATG	2 cut(s)	537, 1060
Bse8I	GATNNNNATC	1 cut(s)	930
BseBI	CCWGG	1 cut(s)	1008
BseDI	CCNNGG	3 cut(s)	334, 1006, 1007
BseGI	GGATG	3 cut(s)	640, 972, 1047
BseJI	GATNNNNATC	1 cut(s)	930
BseLI	CCNNNNNNNGG	3 cut(s)	15, 339, 340
BseMI	GCAATG	2 cut(s)	537, 1060
BseMII	CTCAG	2 cut(s)	141, 857
BseNI	ACTGG	3 cut(s)	20, 763, 826
BseRI	GAGGAG	2 cut(s)	338, 1091
BseSI	GKGCMC	1 cut(s)	995
BseXI	GCAGC	5 cut(s)	43, 67, 426, 629, 979
BsgI	GTGCAG	2 cut(s)	66, 495
BshFI	GGCC	2 cut(s)	461, 523
BshNI	GGYRCC	2 cut(s)	5, 1001
BsiHKAI	GWGCWC	1 cut(s)	995
BslI	CCNNNNNNNGG	3 cut(s)	15, 339, 340
BsmAI	GTCTC	1 cut(s)	654
BsnI	GGCC	2 cut(s)	461, 523
Bsp119I	TTCGAA	1 cut(s)	645
Bsp1286I	GDGCHC	1 cut(s)	995
Bsp143I	GATC	9 cut(s)	157, 490, 548, 577, 586, 838, 901, 931, 955
BspACI	CCGC	2 cut(s)	339, 391
BspANI	GGCC	2 cut(s)	461, 523
BspCNI	CTCAG	2 cut(s)	142, 856
BspHI	TCATGA	1 cut(s)	856
BspLI	GGNNCC	3 cut(s)	7, 159, 1003
BspMI	ACCTGC	2 cut(s)	154, 517
BspPI	GGATC	5 cut(s)	152, 165, 556, 581, 833
BspT104I	TTCGAA	1 cut(s)	645
BspT107I	GGYRCC	2 cut(s)	5, 1001
BsrDI	GCAATG	2 cut(s)	537, 1060
BsrI	ACTGG	3 cut(s)	20, 763, 826
BssECI	CCNNGG	3 cut(s)	334, 1006, 1007
BssMI	GATC	9 cut(s)	157, 490, 548, 577, 586, 838, 901, 931, 955
BssT1I	CCWWGG	1 cut(s)	334
Bst2UI	CCWGG	1 cut(s)	1008
Bst4CI	ACNGT	5 cut(s)	180, 351, 584, 605, 990
BstBAI	YACGTR	1 cut(s)	719
BstBI	TTCGAA	1 cut(s)	645
BstC8I	GCNNGC	2 cut(s)	203, 849
BstDEI	CTNAG	3 cut(s)	150, 283, 843
BstF5I	GGATG	3 cut(s)	640, 972, 1047
BstKTI	GATC	9 cut(s)	160, 493, 551, 580, 589, 841, 904, 934, 958
BstMAI	GTCTC	1 cut(s)	654
BstMBI	GATC	9 cut(s)	157, 490, 548, 577, 586, 838, 901, 931, 955
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 86, 406, 999
BstNI	CCWGG	1 cut(s)	1008
BstNSI	RCATGY	1 cut(s)	704
BstSCI	CCNGG	1 cut(s)	1006
BstSFI	CTRYAG	2 cut(s)	347, 688
BstSLI	GKGCMC	1 cut(s)	995
BstV1I	GCAGC	5 cut(s)	43, 67, 426, 629, 979
BstX2I	RGATCY	2 cut(s)	157, 548
BstYI	RGATCY	2 cut(s)	157, 548
BsuI	GTATCC	3 cut(s)	214, 688, 785
BsuRI	GGCC	2 cut(s)	461, 523
BtsCI	GGATG	3 cut(s)	640, 972, 1047
BtsIMutI	CAGTG	2 cut(s)	580, 819
BveI	ACCTGC	2 cut(s)	154, 517
Cac8I	GCNNGC	2 cut(s)	203, 849
CciI	TCATGA	1 cut(s)	856
CseI	GACGC	1 cut(s)	288
Csp6I	GTAC	3 cut(s)	13, 716, 748
CviAII	CATG	9 cut(s)	379, 410, 480, 575, 682, 701, 802, 857, 868
CviQI	GTAC	3 cut(s)	13, 716, 748
DdeI	CTNAG	3 cut(s)	150, 283, 843
DpnI	GATC	9 cut(s)	159, 492, 550, 579, 588, 840, 903, 933, 957
DpnII	GATC	9 cut(s)	157, 490, 548, 577, 586, 838, 901, 931, 955
EaeI	YGGCCR	2 cut(s)	459, 521
Eco130I	CCWWGG	1 cut(s)	334
EcoRI	GAATTC	1 cut(s)	641
EcoRII	CCWGG	1 cut(s)	1006
EcoT14I	CCWWGG	1 cut(s)	334
ErhI	CCWWGG	1 cut(s)	334
FaeI	CATG	9 cut(s)	382, 413, 483, 578, 685, 704, 805, 860, 871
FalI	AAGNNNNNCTT	2 cut(s)	178, 210
FatI	CATG	9 cut(s)	378, 409, 479, 574, 681, 700, 801, 856, 867
FauI	CCCGC	1 cut(s)	332
FbaI	TGATCA	1 cut(s)	577
FblI	GTMKAC	1 cut(s)	109
Fnu4HI	GCNGC	5 cut(s)	57, 81, 440, 618, 968
FokI	GGATG	3 cut(s)	647, 959, 1054
Fsp4HI	GCNGC	5 cut(s)	57, 81, 440, 618, 968
GluI	GCNGC	5 cut(s)	57, 81, 440, 618, 968
GsuI	CTGGAG	2 cut(s)	49, 66
HaeIII	GGCC	2 cut(s)	461, 523
HgaI	GACGC	1 cut(s)	288
Hin1II	CATG	9 cut(s)	382, 413, 483, 578, 685, 704, 805, 860, 871
HincII	GTYRAC	2 cut(s)	110, 952
HindII	GTYRAC	2 cut(s)	110, 952
HinfI	GANTC	2 cut(s)	798, 853
HphI	GGTGA	1 cut(s)	593
Hpy166II	GTNNAC	4 cut(s)	110, 388, 952, 993
Hpy188I	TCNGA	3 cut(s)	772, 1030, 1041
Hpy188III	TCNNGA	5 cut(s)	28, 161, 497, 809, 857
Hpy8I	GTNNAC	4 cut(s)	110, 388, 952, 993
Hpy99I	CGWCG	2 cut(s)	114, 220
HpyAV	CCTTC	4 cut(s)	148, 494, 900, 1043
HpyCH4III	ACNGT	5 cut(s)	180, 351, 584, 605, 990
HpyCH4IV	ACGT	1 cut(s)	718
HpyCH4V	TGCA	9 cut(s)	83, 89, 95, 409, 420, 512, 542, 554, 993
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 86, 406, 999
HpyF3I	CTNAG	3 cut(s)	150, 283, 843
HpySE526I	ACGT	1 cut(s)	718
Hsp92II	CATG	9 cut(s)	382, 413, 483, 578, 685, 704, 805, 860, 871
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	9 cut(s)	157, 490, 548, 577, 586, 838, 901, 931, 955
LmnI	GCTCC	2 cut(s)	343, 964
Lsp1109I	GCAGC	5 cut(s)	43, 67, 426, 629, 979
LweI	GCATC	3 cut(s)	485, 916, 1032
MaeII	ACGT	1 cut(s)	718
MaeIII	GTNAC	1 cut(s)	703
MalI	GATC	9 cut(s)	159, 492, 550, 579, 588, 840, 903, 933, 957
MboI	GATC	9 cut(s)	157, 490, 548, 577, 586, 838, 901, 931, 955
MboII	GAAGA	1 cut(s)	126
MfeI	CAATTG	2 cut(s)	90, 726
MflI	RGATCY	2 cut(s)	157, 548
MhlI	GDGCHC	1 cut(s)	995
MlsI	TGGCCA	2 cut(s)	461, 523
MluCI	AATT	5 cut(s)	90, 594, 641, 726, 943
MluNI	TGGCCA	2 cut(s)	461, 523
MlyI	GAGTC	2 cut(s)	807, 862
MmeI	TCCRAC	3 cut(s)	612, 637, 891
MnlI	CCTC	7 cut(s)	24, 41, 316, 822, 852, 1024, 1069
Mox20I	TGGCCA	2 cut(s)	461, 523
MroXI	GAANNNNTTC	1 cut(s)	766
MscI	TGGCCA	2 cut(s)	461, 523
MseI	TTAA	2 cut(s)	318, 485
MslI	CAYNNNNRTG	1 cut(s)	606
Msp20I	TGGCCA	2 cut(s)	461, 523
MspA1I	CMGCKG	1 cut(s)	713
MspR9I	CCNGG	1 cut(s)	1008
MunI	CAATTG	2 cut(s)	90, 726
MvaI	CCWGG	1 cut(s)	1008
MwoI	GCNNNNNNNGC	4 cut(s)	65, 86, 406, 999
NdeII	GATC	9 cut(s)	157, 490, 548, 577, 586, 838, 901, 931, 955
NlaIII	CATG	9 cut(s)	382, 413, 483, 578, 685, 704, 805, 860, 871
NlaIV	GGNNCC	3 cut(s)	7, 159, 1003
NspI	RCATGY	1 cut(s)	704
NspV	TTCGAA	1 cut(s)	645
PagI	TCATGA	1 cut(s)	856
PasI	CCCWGGG	1 cut(s)	1007
PciI	ACATGT	1 cut(s)	700
PdmI	GAANNNNTTC	1 cut(s)	766
PflMI	CCANNNNNTGG	1 cut(s)	15
PkrI	GCNGC	5 cut(s)	58, 82, 441, 619, 969
PleI	GAGTC	2 cut(s)	806, 861
PpsI	GAGTC	2 cut(s)	806, 861
Ppu21I	YACGTR	1 cut(s)	719
PscI	ACATGT	1 cut(s)	700
PsiI	TTATAA	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	1006
PspGI	CCWGG	1 cut(s)	1006
PspN4I	GGNNCC	3 cut(s)	7, 159, 1003
PsuI	RGATCY	2 cut(s)	157, 548
PvuII	CAGCTG	1 cut(s)	713
RsaI	GTAC	3 cut(s)	14, 717, 749
RsaNI	GTAC	3 cut(s)	13, 716, 748
RseI	CAYNNNNRTG	1 cut(s)	606
SalI	GTCGAC	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	318, 485
SatI	GCNGC	5 cut(s)	57, 81, 440, 618, 968
Sau3AI	GATC	9 cut(s)	157, 490, 548, 577, 586, 838, 901, 931, 955
ScaI	AGTACT	2 cut(s)	14, 749
SchI	GAGTC	2 cut(s)	807, 862
ScrFI	CCNGG	1 cut(s)	1008
SduI	GDGCHC	1 cut(s)	995
SfaNI	GCATC	3 cut(s)	485, 916, 1032
SfcI	CTRYAG	2 cut(s)	347, 688
SfuI	TTCGAA	1 cut(s)	645
SmiMI	CAYNNNNRTG	1 cut(s)	606
Sse9I	AATT	5 cut(s)	90, 594, 641, 726, 943
SsiI	CCGC	2 cut(s)	339, 391
SspI	AATATT	1 cut(s)	241
StyD4I	CCNGG	1 cut(s)	1006
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	5 cut(s)	180, 351, 584, 605, 990
TaiI	ACGT	1 cut(s)	721
TaqI	TCGA	3 cut(s)	109, 645, 904
TasI	AATT	5 cut(s)	90, 594, 641, 726, 943
TatI	WGTACW	2 cut(s)	12, 747
Tru1I	TTAA	2 cut(s)	318, 485
Tru9I	TTAA	2 cut(s)	318, 485
TscAI	CASTG	2 cut(s)	587, 826
TseI	GCWGC	5 cut(s)	56, 80, 439, 617, 967
TspDTI	ATGAA	2 cut(s)	156, 158
TspGWI	ACGGA	2 cut(s)	233, 810
TspRI	CASTG	2 cut(s)	587, 826
Van91I	CCANNNNNTGG	1 cut(s)	15
VneI	GTGCAC	1 cut(s)	991
XapI	RAATTY	1 cut(s)	641
XceI	RCATGY	1 cut(s)	704
XcmI	CCANNNNNNNNNTGG	1 cut(s)	469
XmiI	GTMKAC	1 cut(s)	109
XmnI	GAANNNNTTC	1 cut(s)	766
ZrmI	AGTACT	2 cut(s)	14, 749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.