Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001035

Physical Location & Seq

Genomic Coordinates Forward (+)

21453303 .. 21455857

Gene Structure 2555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0233900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGATAACGGAGCACCTTATAAAGACGTTTCTGAGGAGCTGGCAACGACTAGGGAGTTGCTCATTGCGATTTCTCACCCTGTTGGAGATCAGGTCCGCGATTTGAGTTTCGTGCCTGTGGACGGGCTTGCAGTGTCAAATGGCGATGTATCGGAGCAGTACCGGTCTGACCTGATTTCTATTTCTTATGAGTCCCCTGATATATACAACTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0008219 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010008 GO:0010033 GO:0010200 GO:0010243 GO:0010941 GO:0012505 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031090 GO:0031410 GO:0031982 GO:0032870 GO:0033612 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048545 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0060089 GO:0060548 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0140096 GO:1900140 GO:1901564 GO:1901698 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

71

Amino Acids

7.79

Weight (kDa)

4.05

Isoelectric Point (pI)

32.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF6865	PF21737	5 - 68	9.2e-17	Family of unknown function (DUF6865)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80670
fragaria_vesca	FvH4_1g21750 FvH4_1g21750 FvH4_1g21750 FvH4_1g21750 FvH4_5g10180 FvH4_5g10180 FvH4_5g10180 FvH4_5g10180 FvH4_5g10180 FvH4_5g10180 FvH4_5g10180 FvH4_5g10180 FvH4_5g30850 FvH4_5g30850 FvH4_5g30850 FvH4_5g30850 FvH4_5g30850 FvH4_5g30850
malus_domestica	MD08G1221600.v1.1 MD15G1412500.v1.1
prunus_persica	Prupe.1G558700_v2.0.a1 Prupe.1G558700_v2.0.a1 Prupe.7G019500_v2.0.a1 Prupe.7G019500_v2.0.a1
pyrus_communis	pycom08g19220 pycom15g36720
rosa_chinensis	RchiOBHm_Chr2g0115621 RchiOBHm_Chr7g0188071 RchiOBHm_Chr7g0225991
rosa_laevigata	RLG00000001774 RLG00000004729 RLG00000018198
rosa_multiflora	Rmu_co8062644.1_g000001 Rmu_ssc0000422.1_g000019
rosa_roxburghii	Rroxscaffold_2G00128050 Rroxscaffold_2G00128920 Rroxscaffold_3G00233330 Rroxscaffold_3G00266760
rosa_rugosa	Rorug02G0198700 Rorug02G0198700 Rorug06G0488000 Rorug06G0488100.1 Rorug07G0233900 Rorug07G0234000 Rorug07G0234100 Rorug07G0234200
rosa_samantha	Rh2AG255900 Rh2BG266700 Rh2CG261300 Rh2DG264200 Rh7AG092300 Rh7AG369300 Rh7BG094000 Rh7BG368000 Rh7CG093200 Rh7CG093800 Rh7CG387700
rosa_wichuraiana	Rw0G020950 Rw2G020030 Rw7G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	21
AccII	CGCG	1 cut(s)	99
AciI	CCGC	1 cut(s)	97
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgeI	ACCGGT	1 cut(s)	162
AluBI	AGCT	1 cut(s)	40
AluI	AGCT	1 cut(s)	40
Alw21I	GWGCWC	1 cut(s)	16
AsiGI	ACCGGT	1 cut(s)	162
AspS9I	GGNCC	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	16
BfaI	CTAG	1 cut(s)	51
Bme18I	GGWCC	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	94
BsaWI	WCCGGW	1 cut(s)	162
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse118I	RCCGGY	1 cut(s)	162
Bse3DI	GCAATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	24
BseRI	GAGGAG	1 cut(s)	50
Bsh1236I	CGCG	1 cut(s)	99
BshTI	ACCGGT	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	16
BsiSI	CCGG	1 cut(s)	163
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	1 cut(s)	88
BspACI	CCGC	1 cut(s)	97
BspCNI	CTCAG	1 cut(s)	25
BspFNI	CGCG	1 cut(s)	99
BsrDI	GCAATG	1 cut(s)	63
BsrFI	RCCGGY	1 cut(s)	162
BssAI	RCCGGY	1 cut(s)	162
BssMI	GATC	1 cut(s)	88
BstC8I	GCNNGC	2 cut(s)	42, 129
BstDEI	CTNAG	1 cut(s)	33
BstFNI	CGCG	1 cut(s)	99
BstKTI	GATC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	88
BstUI	CGCG	1 cut(s)	99
BtgZI	GCGATG	1 cut(s)	159
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	2 cut(s)	42, 129
Cfr10I	RCCGGY	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	160
CspAI	ACCGGT	1 cut(s)	162
CviJI	RGCY	2 cut(s)	40, 127
CviKI_1	RGCY	2 cut(s)	40, 127
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	94
FaiI	YATR	5 cut(s)	21, 189, 203, 205, 214
FaqI	GGGAC	1 cut(s)	178
FspBI	CTAG	1 cut(s)	51
HapII	CCGG	1 cut(s)	163
HinfI	GANTC	1 cut(s)	191
HpaII	CCGG	1 cut(s)	163
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	3 cut(s)	34, 154, 169
Hpy8I	GTNNAC	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	1 cut(s)	131
HpyF3I	CTNAG	1 cut(s)	33
HpySE526I	ACGT	1 cut(s)	27
Kzo9I	GATC	1 cut(s)	88
LmnI	GCTCC	3 cut(s)	11, 37, 154
LpnPI	CCDG	7 cut(s)	26, 77, 93, 129, 176, 185, 210
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	1 cut(s)	27
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	16
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	1 cut(s)	28
MspI	CCGG	1 cut(s)	163
MvnI	CGCG	1 cut(s)	99
NdeII	GATC	1 cut(s)	88
PinAI	ACCGGT	1 cut(s)	162
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
PsiI	TTATAA	1 cut(s)	21
PspPI	GGNCC	1 cut(s)	94
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	1 cut(s)	94
SchI	GAGTC	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	5 cut(s)	19, 30, 42, 96, 174
SinI	GGWCC	1 cut(s)	94
SsiI	CCGC	1 cut(s)	97
SspMI	CTAG	1 cut(s)	51
TaiI	ACGT	1 cut(s)	30
TscAI	CASTG	1 cut(s)	138
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	1 cut(s)	138
VpaK11BI	GGWCC	1 cut(s)	94
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.