Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001035

Physical Location & Seq

Genomic Coordinates Forward (+)

21471846 .. 21478539

Gene Structure 6694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0234200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTTGGGATCGTTGTACGGACCATTGGCCCAGCTCCCCCTTCTCGTCTTCAGCTCCCCTCTTCTATCAGAGTACGTGCTTGACTTGAGAAAATTGATAGCTGAAAAGTATCAGTTACCATTAGAGAAGTTGAGGCTTATTATGCGAGGCAATGTGTTGCATGACAGCAAAAGTGGGCAAGATGTGAATCTCCAACTCAAGGATGGCGATTCTCTTATCGTTGCTGTCAAACCAAAGCCACCTTCTAAGCATCTTCGGGATGGACTTGACGAGGACGACGACGAAGATGATCTGAAGTTTCAGCTTCCCCAATCATCAAGCCGGTGGAAGAGGAGAGTATATGCTGTTCTACATGATAAGTTGAAGCTTCCTGATATCCTTTTGATGGCCATTTTCTCTCTCAGTTTGAAGATGTGGGTAATTATCATTCTGTGGTTTATATTGGCACCTGTGGCCCACAGATGGGATCTTGGCCCTTTATATATACTTGGCACCGGTTTTGGTATCATTCTTCTGAATCTAGGACAGCGGAAGCCTGGCGATGTCAGTGCATATTCGATTTTCAATGAAGATTTTAGAGAGCTTCCAGGGACCCTTAATGCAGAACGTCTTGATGGGGACATACGAACAGGGCAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko05164 map03013 map05164

Pfam Domains

Protein Families

WD40

Protein Analysis

213

Amino Acids

24.12

Weight (kDa)

6.43

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	23 - 78	4.9e-06	Ubiquitin family
SAYSvFN	PF10260	142 - 208	7.2e-25	Uncharacterized conserved domain (SAYSvFN)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80670
fragaria_vesca	FvH4_1g21750 FvH4_1g21750 FvH4_1g21750 FvH4_1g21750 FvH4_5g10180 FvH4_5g10180 FvH4_5g10180 FvH4_5g10180 FvH4_5g10180 FvH4_5g10180 FvH4_5g10180 FvH4_5g10180 FvH4_5g30850 FvH4_5g30850 FvH4_5g30850 FvH4_5g30850 FvH4_5g30850 FvH4_5g30850
malus_domestica	MD08G1221600.v1.1 MD15G1412500.v1.1
prunus_persica	Prupe.1G558700_v2.0.a1 Prupe.1G558700_v2.0.a1 Prupe.7G019500_v2.0.a1 Prupe.7G019500_v2.0.a1
pyrus_communis	pycom08g19220 pycom15g36720
rosa_chinensis	RchiOBHm_Chr2g0115621 RchiOBHm_Chr7g0188071 RchiOBHm_Chr7g0225991
rosa_laevigata	RLG00000001774 RLG00000004729 RLG00000018198
rosa_multiflora	Rmu_co8062644.1_g000001 Rmu_ssc0000422.1_g000019
rosa_roxburghii	Rroxscaffold_2G00128050 Rroxscaffold_2G00128920 Rroxscaffold_3G00233330 Rroxscaffold_3G00266760
rosa_rugosa	Rorug02G0198700 Rorug02G0198700 Rorug06G0488000 Rorug06G0488100.1 Rorug07G0233900 Rorug07G0234000 Rorug07G0234100 Rorug07G0234200
rosa_samantha	Rh2AG255900 Rh2BG266700 Rh2CG261300 Rh2DG264200 Rh7AG092300 Rh7AG369300 Rh7BG094000 Rh7BG368000 Rh7CG093200 Rh7CG093800 Rh7CG387700
rosa_wichuraiana	Rw0G020950 Rw2G020030 Rw7G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	445, 491
AciI	CCGC	1 cut(s)	529
AclWI	GGATC	2 cut(s)	16, 474
AcoI	YGGCCR	1 cut(s)	387
AcuI	CTGAAG	2 cut(s)	34, 314
AfaI	GTAC	2 cut(s)	17, 74
AfiI	CCNNNNNNNGG	4 cut(s)	199, 385, 462, 463
AgeI	ACCGGT	1 cut(s)	494
AgsI	TTSAA	3 cut(s)	364, 409, 565
AjnI	CCWGG	2 cut(s)	535, 586
AjuI	GAANNNNNNNTTGG	2 cut(s)	226, 258
AluBI	AGCT	6 cut(s)	34, 54, 101, 304, 367, 583
AluI	AGCT	6 cut(s)	34, 54, 101, 304, 367, 583
AlwI	GGATC	2 cut(s)	16, 474
AoxI	GGCC	4 cut(s)	27, 387, 453, 472
AsiGI	ACCGGT	1 cut(s)	494
AspS9I	GGNCC	5 cut(s)	20, 28, 454, 473, 591
AvaII	GGWCC	2 cut(s)	20, 591
BalI	TGGCCA	1 cut(s)	389
BanI	GGYRCC	2 cut(s)	445, 491
BbsI	GAAGAC	1 cut(s)	40
BccI	CCATC	5 cut(s)	197, 254, 379, 456, 608
BcgI	CGANNNNNNTGC	2 cut(s)	530, 564
BciT130I	CCWGG	2 cut(s)	537, 588
BfaI	CTAG	1 cut(s)	521
Bme1390I	CCNGG	2 cut(s)	537, 588
Bme18I	GGWCC	2 cut(s)	20, 591
BmgT120I	GGNCC	5 cut(s)	20, 28, 454, 473, 591
BmiI	GGNNCC	4 cut(s)	447, 493, 592, 593
BmrFI	CCNGG	2 cut(s)	537, 588
BmsI	GCATC	1 cut(s)	259
BpiI	GAAGAC	1 cut(s)	40
BpuEI	CTTGAG	2 cut(s)	106, 182
BsaAI	YACGTR	1 cut(s)	76
BsaBI	GATNNNNATC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	587
BsaWI	WCCGGW	1 cut(s)	494
Bsc4I	CCNNNNNNNGG	4 cut(s)	199, 385, 462, 463
Bse118I	RCCGGY	2 cut(s)	321, 494
Bse3DI	GCAATG	1 cut(s)	157
Bse8I	GATNNNNATC	1 cut(s)	186
BseBI	CCWGG	2 cut(s)	537, 588
BseDI	CCNNGG	1 cut(s)	587
BseGI	GGATG	2 cut(s)	208, 265
BseJI	GATNNNNATC	1 cut(s)	186
BseLI	CCNNNNNNNGG	4 cut(s)	199, 385, 462, 463
BseMI	GCAATG	1 cut(s)	157
BseMII	CTCAG	1 cut(s)	415
BseRI	GAGGAG	1 cut(s)	346
BseYI	CCCAGC	1 cut(s)	30
BshFI	GGCC	4 cut(s)	29, 389, 455, 474
BshNI	GGYRCC	2 cut(s)	445, 491
BshTI	ACCGGT	1 cut(s)	494
BsiSI	CCGG	2 cut(s)	322, 495
BslFI	GGGAC	2 cut(s)	604, 632
BslI	CCNNNNNNNGG	4 cut(s)	199, 385, 462, 463
BsmFI	GGGAC	2 cut(s)	604, 632
BsnI	GGCC	4 cut(s)	29, 389, 455, 474
Bsp143I	GATC	3 cut(s)	8, 289, 466
BspACI	CCGC	1 cut(s)	529
BspANI	GGCC	4 cut(s)	29, 389, 455, 474
BspCNI	CTCAG	1 cut(s)	414
BspLI	GGNNCC	4 cut(s)	447, 493, 592, 593
BspPI	GGATC	2 cut(s)	16, 474
BspT107I	GGYRCC	2 cut(s)	445, 491
BsrDI	GCAATG	1 cut(s)	157
BsrFI	RCCGGY	2 cut(s)	321, 494
BssAI	RCCGGY	2 cut(s)	321, 494
BssECI	CCNNGG	1 cut(s)	587
BssMI	GATC	3 cut(s)	8, 289, 466
Bst2UI	CCWGG	2 cut(s)	537, 588
Bst6I	CTCTTC	2 cut(s)	66, 323
BstBAI	YACGTR	1 cut(s)	76
BstDEI	CTNAG	2 cut(s)	246, 401
BstF5I	GGATG	2 cut(s)	208, 265
BstKTI	GATC	3 cut(s)	11, 292, 469
BstMBI	GATC	3 cut(s)	8, 289, 466
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 452
BstNI	CCWGG	2 cut(s)	537, 588
BstSCI	CCNGG	2 cut(s)	535, 586
BstV2I	GAAGAC	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	466
BsuRI	GGCC	4 cut(s)	29, 389, 455, 474
BtgZI	GCGATG	1 cut(s)	555
BtsCI	GGATG	2 cut(s)	208, 265
BtsIMutI	CAGTG	1 cut(s)	553
Cfr10I	RCCGGY	2 cut(s)	321, 494
Cfr13I	GGNCC	5 cut(s)	20, 28, 454, 473, 591
Csp6I	GTAC	2 cut(s)	16, 73
CspAI	ACCGGT	1 cut(s)	494
CviAII	CATG	2 cut(s)	161, 353
CviQI	GTAC	2 cut(s)	16, 73
DdeI	CTNAG	2 cut(s)	246, 401
DpnI	GATC	3 cut(s)	10, 291, 468
DpnII	GATC	3 cut(s)	8, 289, 466
EaeI	YGGCCR	1 cut(s)	387
Eam1104I	CTCTTC	2 cut(s)	66, 323
EarI	CTCTTC	2 cut(s)	66, 323
Eco32I	GATATC	1 cut(s)	376
Eco47I	GGWCC	2 cut(s)	20, 591
Eco57I	CTGAAG	2 cut(s)	34, 314
EcoO109I	RGGNCCY	1 cut(s)	591
EcoRII	CCWGG	2 cut(s)	535, 586
EcoRV	GATATC	1 cut(s)	376
FaeI	CATG	2 cut(s)	164, 356
FaqI	GGGAC	2 cut(s)	604, 632
FatI	CATG	2 cut(s)	160, 352
FokI	GGATG	2 cut(s)	215, 272
FspBI	CTAG	1 cut(s)	521
GsaI	CCCAGC	1 cut(s)	34
HaeIII	GGCC	4 cut(s)	29, 389, 455, 474
HapII	CCGG	2 cut(s)	322, 495
Hin1II	CATG	2 cut(s)	164, 356
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	3 cut(s)	187, 209, 517
HpaII	CCGG	2 cut(s)	322, 495
Hpy188I	TCNGA	3 cut(s)	70, 294, 516
Hpy188III	TCNNGA	3 cut(s)	257, 371, 611
Hpy99I	CGWCG	2 cut(s)	281, 284
HpyAV	CCTTC	2 cut(s)	50, 252
HpyCH4IV	ACGT	2 cut(s)	75, 607
HpyCH4V	TGCA	3 cut(s)	160, 551, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 452
HpyF3I	CTNAG	2 cut(s)	246, 401
HpySE526I	ACGT	2 cut(s)	75, 607
Hsp92II	CATG	2 cut(s)	164, 356
KflI	GGGWCCC	1 cut(s)	591
Kzo9I	GATC	3 cut(s)	8, 289, 466
LmnI	GCTCC	2 cut(s)	39, 59
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	1 cut(s)	521
MaeII	ACGT	2 cut(s)	75, 607
MaeIII	GTNAC	1 cut(s)	114
MalI	GATC	3 cut(s)	10, 291, 468
MboI	GATC	3 cut(s)	8, 289, 466
MboII	GAAGA	8 cut(s)	40, 53, 245, 296, 340, 421, 503, 581
MflI	RGATCY	1 cut(s)	466
MlsI	TGGCCA	1 cut(s)	389
MluCI	AATT	2 cut(s)	92, 420
MluNI	TGGCCA	1 cut(s)	389
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	5 cut(s)	69, 126, 140, 265, 324
Mox20I	TGGCCA	1 cut(s)	389
MscI	TGGCCA	1 cut(s)	389
MseI	TTAA	1 cut(s)	597
Msp20I	TGGCCA	1 cut(s)	389
MspA1I	CMGCKG	1 cut(s)	529
MspI	CCGG	2 cut(s)	322, 495
MspR9I	CCNGG	2 cut(s)	537, 588
MvaI	CCWGG	2 cut(s)	537, 588
MwoI	GCNNNNNNNGC	2 cut(s)	142, 452
NdeII	GATC	3 cut(s)	8, 289, 466
NlaIII	CATG	2 cut(s)	164, 356
NlaIV	GGNNCC	4 cut(s)	447, 493, 592, 593
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PfeI	GAWTC	3 cut(s)	187, 209, 517
PinAI	ACCGGT	1 cut(s)	494
Ppu21I	YACGTR	1 cut(s)	76
PpuMI	RGGWCCY	1 cut(s)	591
Psp5II	RGGWCCY	1 cut(s)	591
Psp6I	CCWGG	2 cut(s)	535, 586
PspFI	CCCAGC	1 cut(s)	30
PspGI	CCWGG	2 cut(s)	535, 586
PspN4I	GGNNCC	4 cut(s)	447, 493, 592, 593
PspPI	GGNCC	5 cut(s)	20, 28, 454, 473, 591
PspPPI	RGGWCCY	1 cut(s)	591
PsrI	GAACNNNNNNTAC	2 cut(s)	330, 362
PsuI	RGATCY	1 cut(s)	466
RsaI	GTAC	2 cut(s)	17, 74
RsaNI	GTAC	2 cut(s)	16, 73
SaqAI	TTAA	1 cut(s)	597
Sau3AI	GATC	3 cut(s)	8, 289, 466
Sau96I	GGNCC	5 cut(s)	20, 28, 454, 473, 591
ScrFI	CCNGG	2 cut(s)	537, 588
SfaNI	GCATC	1 cut(s)	259
SinI	GGWCC	2 cut(s)	20, 591
SmlI	CTYRAG	2 cut(s)	85, 197
SmoI	CTYRAG	2 cut(s)	85, 197
Sse9I	AATT	2 cut(s)	92, 420
SsiI	CCGC	1 cut(s)	529
SspMI	CTAG	1 cut(s)	521
StyD4I	CCNGG	2 cut(s)	535, 586
TaiI	ACGT	2 cut(s)	78, 610
TaqI	TCGA	1 cut(s)	557
TasI	AATT	2 cut(s)	92, 420
TfiI	GAWTC	3 cut(s)	187, 209, 517
Tru1I	TTAA	1 cut(s)	597
Tru9I	TTAA	1 cut(s)	597
TscAI	CASTG	1 cut(s)	553
TspDTI	ATGAA	1 cut(s)	582
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	1 cut(s)	553
VpaK11BI	GGWCC	2 cut(s)	20, 591
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200
XspI	CTAG	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.