Prupe.1G558700_v2.0.a1

Rae1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001035
Physical Location & Seq
Forward (+)
45596896 .. 45602569
5674 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G558700.1

Sequence Viewer

Length: 1056 bp
ATGTCGAATTTCATGGCTGCTGCAAATGCAAATGCAAATTCAAATCCAAATCCAAACAAGTCCTTTGAGGTCGCTCAACCTCCAAACGACTCCATATCAAGCCTAAGTTTCAGTCCCAAGAGCAACATTCTGGTCGCCACCTCTTGGGACAACCAGGTGCGATGCTGGGAGATACACCAGAGCGGAACAAATCTTGCCAGTCAGCCCAAGGCAGCAATATCCCATGACCATCCGGTTTTGTGCTCAACTTGGAAAGAGGATGGAACGACTGTGTTCTCTGGAGGTTGCGACAAGCAAGTTAAGATGTGGCCTTTGGGTGGCCAGCCAGTAACTGTTGCCATGCATGATGCACCCATTACAGAGATTTCTTGGATCCCTGAGATGAGCCTCTTAGTCACAGGAAGCTGGGACAAGACTTTGAAGTATTGGGATGTGAGGCAGCCAAATCCAGTGCATACCCAACAACTACCTGAGCGCTGTTATTCTCTATCAGTGCGATACCCCCTAATGGTTGTTGGCACTGCAGACAGAAATCTGGTTGTTTTTAACTTGCAGAACCCACAGACTGAATTCAAGAGAATTGTTTCGCCCCTAAAGTATCAAACAAGGTGTGTTGCTGCATTTCCTGATCAGCAAGGATTCTTGGTTGGCTCTATTGAAGGGAGGGTCGGCGTACATCATCTGGATGAACAACAACAAAATAAAAACTTTACCTTTAAGTGCCATAGAGAGGGCAGTGAGATATACTCAGTCAACTCTCTGAACTTCCATCCAGTGCATCACACATTTACTACTGCTGGTTCTGATGGTTCTTTCAATTTTTGGGATAAGGATAGCAAACAGAGACTAAAGGCAATGTCAAGGTGCAATCAACCTATACCTTGCAGTACGTTCAACAATGATGGTTCCATATTTGCATATGCGGTTTGCTATGATTGGAGCAAGGGTGCAGAAAATCATAATCCAGCTACCGCGAAGAACTACATTTTCCTCCATTTGCCACAGGAAGCCGAGGTTAAAAGCAAACCACGAGTTAACACTGGTGGAAAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05164 map03013 map05164
Pfam Domains
Protein Families
WD40

Protein Analysis

352

Amino Acids

39.27

Weight (kDa)

8.31

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 144
AccBSI CCGCTC 1 cut(s) 183
AccII CGCG 1 cut(s) 974
AciI CCGC 3 cut(s) 183, 923, 972
AclWI GGATC 2 cut(s) 367, 380
AcoI YGGCCR 1 cut(s) 319
AcsI RAATTY 3 cut(s) 7, 37, 569
AfaI GTAC 2 cut(s) 675, 889
AfeI AGCGCT 1 cut(s) 476
AfiI CCNNNNNNNGG 4 cut(s) 144, 317, 508, 730
AgsI TTSAA 6 cut(s) 42, 421, 574, 659, 817, 895
AjnI CCWGG 1 cut(s) 153
AluBI AGCT 2 cut(s) 405, 968
AluI AGCT 2 cut(s) 405, 968
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 1 cut(s) 838
AlwI GGATC 2 cut(s) 367, 380
AlwNI CAGNNNCTG 1 cut(s) 332
Aor51HI AGCGCT 1 cut(s) 476
AoxI GGCC 2 cut(s) 308, 319
ApeKI GCWGC 5 cut(s) 17, 20, 212, 439, 617
ApoI RAATTY 3 cut(s) 7, 37, 569
Asp700I GAANNNNTTC 1 cut(s) 583
AspLEI GCGC 1 cut(s) 477
BalI TGGCCA 1 cut(s) 321
BamHI GGATCC 1 cut(s) 372
BauI CACGAG 1 cut(s) 1029
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 5 cut(s) 4, 7, 224, 451, 604
BccI CCATC 5 cut(s) 237, 254, 777, 800, 896
BciT130I CCWGG 1 cut(s) 155
BclI TGATCA 1 cut(s) 628
BcoDI GTCTC 1 cut(s) 838
BfmI CTRYAG 1 cut(s) 522
BfoI RGCGCY 1 cut(s) 478
BisI GCNGC 5 cut(s) 18, 21, 213, 440, 618
BlsI GCNGC 5 cut(s) 19, 22, 214, 441, 619
Bme1390I CCNGG 1 cut(s) 155
BmiI GGNNCC 2 cut(s) 374, 907
BmrFI CCNGG 1 cut(s) 155
BmsI GCATC 3 cut(s) 152, 337, 787
BplI GAGNNNNNCTC 2 cut(s) 731, 763
BpmI CTGGAG 1 cut(s) 300
Bpu10I CCTNAGC 1 cut(s) 471
BsaJI CCNNGG 2 cut(s) 207, 1011
BsaWI WCCGGW 1 cut(s) 232
BsaXI ACNNNNNCTCC 2 cut(s) 931, 961
Bsc4I CCNNNNNNNGG 4 cut(s) 144, 317, 508, 730
Bse1I ACTGG 5 cut(s) 198, 326, 449, 773, 1045
Bse3DI GCAATG 1 cut(s) 861
BseBI CCWGG 1 cut(s) 155
BseDI CCNNGG 2 cut(s) 207, 1011
BseGI GGATG 5 cut(s) 229, 265, 436, 691, 769
BseLI CCNNNNNNNGG 4 cut(s) 144, 317, 508, 730
BseMI GCAATG 1 cut(s) 861
BseMII CTCAG 3 cut(s) 369, 462, 762
BseNI ACTGG 5 cut(s) 198, 326, 449, 773, 1045
BseXI GCAGC 5 cut(s) 4, 7, 224, 451, 604
BseYI CCCAGC 2 cut(s) 165, 405
BsgI GTGCAG 1 cut(s) 969
Bsh1236I CGCG 1 cut(s) 974
BshFI GGCC 2 cut(s) 310, 321
BsiHKAI GWGCWC 1 cut(s) 245
BsiSI CCGG 1 cut(s) 233
BslFI GGGAC 3 cut(s) 99, 161, 422
BslI CCNNNNNNNGG 4 cut(s) 144, 317, 508, 730
BsmAI GTCTC 1 cut(s) 838
BsmFI GGGAC 3 cut(s) 99, 161, 422
BsnI GGCC 2 cut(s) 310, 321
Bsp1286I GDGCHC 1 cut(s) 245
Bsp143I GATC 2 cut(s) 372, 628
BspACI CCGC 3 cut(s) 183, 923, 972
BspANI GGCC 2 cut(s) 310, 321
BspCNI CTCAG 3 cut(s) 370, 463, 761
BspFNI CGCG 1 cut(s) 974
BspLI GGNNCC 2 cut(s) 374, 907
BspMAI CTGCAG 1 cut(s) 526
BspPI GGATC 2 cut(s) 367, 380
BsrBI CCGCTC 1 cut(s) 183
BsrDI GCAATG 1 cut(s) 861
BsrI ACTGG 5 cut(s) 198, 326, 449, 773, 1045
BssECI CCNNGG 2 cut(s) 207, 1011
BssMI GATC 2 cut(s) 372, 628
BssSI CACGAG 1 cut(s) 1029
BssT1I CCWWGG 1 cut(s) 207
Bst2BI CACGAG 1 cut(s) 1029
Bst2UI CCWGG 1 cut(s) 155
Bst4CI ACNGT 2 cut(s) 271, 334
BstC8I GCNNGC 1 cut(s) 323
BstDEI CTNAG 5 cut(s) 104, 378, 391, 471, 748
BstF5I GGATG 5 cut(s) 229, 265, 436, 691, 769
BstFNI CGCG 1 cut(s) 974
BstH2I RGCGCY 1 cut(s) 478
BstHHI GCGC 1 cut(s) 477
BstKTI GATC 2 cut(s) 375, 631
BstMAI GTCTC 1 cut(s) 838
BstMBI GATC 2 cut(s) 372, 628
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNI CCWGG 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 153
BstSFI CTRYAG 1 cut(s) 522
BstUI CGCG 1 cut(s) 974
BstV1I GCAGC 5 cut(s) 4, 7, 224, 451, 604
BstX2I RGATCY 1 cut(s) 372
BstYI RGATCY 1 cut(s) 372
BsuRI GGCC 2 cut(s) 310, 321
BtgZI GCGATG 1 cut(s) 175
BtsCI GGATG 5 cut(s) 229, 265, 436, 691, 769
BtsI GCAGTG 2 cut(s) 519, 742
BtsIMutI CAGTG 6 cut(s) 456, 498, 519, 742, 780, 1038
Cac8I GCNNGC 1 cut(s) 323
CaiI CAGNNNCTG 1 cut(s) 332
CfoI GCGC 1 cut(s) 477
CsiI ACCWGGT 1 cut(s) 153
Csp6I GTAC 2 cut(s) 674, 888
CviAII CATG 4 cut(s) 13, 224, 340, 344
CviQI GTAC 2 cut(s) 674, 888
DdeI CTNAG 5 cut(s) 104, 378, 391, 471, 748
DpnI GATC 2 cut(s) 374, 630
DpnII GATC 2 cut(s) 372, 628
EaeI YGGCCR 1 cut(s) 319
Eco130I CCWWGG 1 cut(s) 207
Eco47III AGCGCT 1 cut(s) 476
EcoRI GAATTC 1 cut(s) 569
EcoRII CCWGG 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 207
EcoT22I ATGCAT 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 4 cut(s) 16, 227, 343, 347
FaqI GGGAC 3 cut(s) 99, 161, 422
FatI CATG 4 cut(s) 12, 223, 339, 343
FauNDI CATATG 1 cut(s) 919
FbaI TGATCA 1 cut(s) 628
Fnu4HI GCNGC 5 cut(s) 18, 21, 213, 440, 618
FokI GGATG 5 cut(s) 216, 272, 443, 698, 756
Fsp4HI GCNGC 5 cut(s) 18, 21, 213, 440, 618
GlaI GCGC 1 cut(s) 476
GluI GCNGC 5 cut(s) 18, 21, 213, 440, 618
GsaI CCCAGC 2 cut(s) 169, 409
GsuI CTGGAG 1 cut(s) 300
HaeII RGCGCY 1 cut(s) 478
HaeIII GGCC 2 cut(s) 310, 321
HapII CCGG 1 cut(s) 233
HhaI GCGC 1 cut(s) 477
Hin1II CATG 4 cut(s) 16, 227, 343, 347
Hin6I GCGC 1 cut(s) 475
HinP1I GCGC 1 cut(s) 475
HincII GTYRAC 2 cut(s) 754, 1036
HindII GTYRAC 2 cut(s) 754, 1036
HinfI GANTC 2 cut(s) 89, 639
HpaI GTTAAC 1 cut(s) 1036
HpaII CCGG 1 cut(s) 233
Hpy166II GTNNAC 2 cut(s) 754, 1036
Hpy188I TCNGA 2 cut(s) 762, 805
Hpy188III TCNNGA 4 cut(s) 279, 574, 626, 683
Hpy8I GTNNAC 2 cut(s) 754, 1036
HpyAV CCTTC 1 cut(s) 653
HpyCH4III ACNGT 2 cut(s) 271, 334
HpyCH4IV ACGT 1 cut(s) 890
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 5 cut(s) 104, 378, 391, 471, 748
HpySE526I ACGT 1 cut(s) 890
Hsp92II CATG 4 cut(s) 16, 227, 343, 347
HspAI GCGC 1 cut(s) 475
Ksp22I TGATCA 1 cut(s) 628
KspAI GTTAAC 1 cut(s) 1036
Kzo9I GATC 2 cut(s) 372, 628
LmnI GCTCC 1 cut(s) 939
Lsp1109I GCAGC 5 cut(s) 4, 7, 224, 451, 604
LweI GCATC 3 cut(s) 152, 337, 787
MabI ACCWGGT 1 cut(s) 153
MaeII ACGT 1 cut(s) 890
MaeIII GTNAC 2 cut(s) 328, 394
MalI GATC 2 cut(s) 374, 630
MbiI CCGCTC 1 cut(s) 183
MboI GATC 2 cut(s) 372, 628
MboII GAAGA 1 cut(s) 988
MflI RGATCY 1 cut(s) 372
MhlI GDGCHC 1 cut(s) 245
MlsI TGGCCA 1 cut(s) 321
MluCI AATT 5 cut(s) 7, 37, 569, 579, 817
MluNI TGGCCA 1 cut(s) 321
MlyI GAGTC 1 cut(s) 83
Mox20I TGGCCA 1 cut(s) 321
Mph1103I ATGCAT 1 cut(s) 345
MroXI GAANNNNTTC 1 cut(s) 583
MscI TGGCCA 1 cut(s) 321
MseI TTAA 5 cut(s) 300, 546, 717, 1017, 1035
MslI CAYNNNNRTG 1 cut(s) 684
Msp20I TGGCCA 1 cut(s) 321
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 155
MvaI CCWGG 1 cut(s) 155
MvnI CGCG 1 cut(s) 974
MwoI GCNNNNNNNGC 1 cut(s) 26
NdeI CATATG 1 cut(s) 919
NdeII GATC 2 cut(s) 372, 628
NlaIII CATG 4 cut(s) 16, 227, 343, 347
NlaIV GGNNCC 2 cut(s) 374, 907
NmeAIII GCCGAG 1 cut(s) 1036
NmuCI GTSAC 1 cut(s) 394
NsiI ATGCAT 1 cut(s) 345
PdmI GAANNNNTTC 1 cut(s) 583
PfeI GAWTC 1 cut(s) 639
PflMI CCANNNNNTGG 1 cut(s) 144
PkrI GCNGC 5 cut(s) 19, 22, 214, 441, 619
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
Psp6I CCWGG 1 cut(s) 153
PspFI CCCAGC 2 cut(s) 165, 405
PspGI CCWGG 1 cut(s) 153
PspN4I GGNNCC 2 cut(s) 374, 907
PstI CTGCAG 1 cut(s) 526
PstNI CAGNNNCTG 1 cut(s) 332
PsuI RGATCY 1 cut(s) 372
RsaI GTAC 2 cut(s) 675, 889
RsaNI GTAC 2 cut(s) 674, 888
RseI CAYNNNNRTG 1 cut(s) 684
SaqAI TTAA 5 cut(s) 300, 546, 717, 1017, 1035
SatI GCNGC 5 cut(s) 18, 21, 213, 440, 618
Sau3AI GATC 2 cut(s) 372, 628
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 1 cut(s) 155
SduI GDGCHC 1 cut(s) 245
SexAI ACCWGGT 1 cut(s) 153
SfaNI GCATC 3 cut(s) 152, 337, 787
SfcI CTRYAG 1 cut(s) 522
SmiMI CAYNNNNRTG 1 cut(s) 684
Sse9I AATT 5 cut(s) 7, 37, 569, 579, 817
SsiI CCGC 3 cut(s) 183, 923, 972
StyD4I CCNGG 1 cut(s) 153
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 2 cut(s) 271, 334
TaiI ACGT 1 cut(s) 893
TaqI TCGA 1 cut(s) 5
TasI AATT 5 cut(s) 7, 37, 569, 579, 817
TfiI GAWTC 1 cut(s) 639
Tru1I TTAA 5 cut(s) 300, 546, 717, 1017, 1035
Tru9I TTAA 5 cut(s) 300, 546, 717, 1017, 1035
TscAI CASTG 6 cut(s) 456, 498, 526, 742, 780, 1045
TseFI GTSAC 1 cut(s) 394
TseI GCWGC 5 cut(s) 17, 20, 212, 439, 617
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 1 cut(s) 702
TspRI CASTG 6 cut(s) 456, 498, 526, 742, 780, 1045
Van91I CCANNNNNTGG 1 cut(s) 144
XapI RAATTY 3 cut(s) 7, 37, 569
XmnI GAANNNNTTC 1 cut(s) 583
Zsp2I ATGCAT 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.