pycom15g36720

Rae1-like protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
36676298 .. 36679302
3005 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g36720.2

Sequence Viewer

Length: 546 bp
ATGGTTGTTGGCACTGCAGACCGAAATCTGATTGTTTTTAACTTGCAAACCCCACAGACTGAATTCAAGAGAATTGTTTCACCCCTAAAGTATCAAACAAGGTCTGTTGCTGCATTTCCGGATCAGCAAGGATTCTTGGTTGGCTCTATTGAAGGGAGGGTTGGTGTACATCATCTTGATGATGGACTACAAAGTAAAAACTTTACCTTCAAGTGCCATAGAGAGGGCAATGACATCTACTCAGTCAACTCTCTGAACTTCCATCCCGTACATCACACATTTGCTACCTCTGGTTCTGACGGTTCTTTCAATTTTTGGGATAAGGATAGCAAACAGAGACTAAAGGCAATGGCGAGGTGCAGTCAATCTATACCTTGCAGTGCTTTCAACAGTGATGGTTCCATATTTGCATACGCAGTTTGCTATGATTGGAGCAATGGTGCTGAAAATCACAATCCTGCTACTGCAAAGAACTGCATTTACCTCCATGTGCCACAGGAAGCTGAGGTTAAAGGCAAGCCAAGAATCAACACCGGAAAACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

182

Amino Acids

20.18

Weight (kDa)

8.83

Isoelectric Point (pI)

34.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 118
AclWI GGATC 1 cut(s) 129
AcsI RAATTY 1 cut(s) 62
AfaI GTAC 2 cut(s) 168, 270
AfiI CCNNNNNNNGG 2 cut(s) 223, 540
AgsI TTSAA 5 cut(s) 67, 152, 211, 310, 388
AjuI GAANNNNNNNTTGG 2 cut(s) 144, 176
AluBI AGCT 1 cut(s) 503
AluI AGCT 1 cut(s) 503
Alw26I GTCTC 1 cut(s) 331
AlwI GGATC 1 cut(s) 129
Aor13HI TCCGGA 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 62
Asp700I GAANNNNTTC 1 cut(s) 76
AsuHPI GGTGA 1 cut(s) 72
BbvCI CCTCAGC 1 cut(s) 504
BbvI GCAGC 1 cut(s) 97
BccI CCATC 3 cut(s) 176, 270, 389
BcoDI GTCTC 1 cut(s) 331
BfmI CTRYAG 1 cut(s) 15
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 400
Bpu10I CCTNAGC 1 cut(s) 504
BsaWI WCCGGW 2 cut(s) 118, 533
BsaXI ACNNNNNCTCC 4 cut(s) 148, 178, 424, 454
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 540
Bse3DI GCAATG 3 cut(s) 235, 354, 442
BseAI TCCGGA 1 cut(s) 118
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 2 cut(s) 223, 540
BseMI GCAATG 3 cut(s) 235, 354, 442
BseMII CTCAG 2 cut(s) 255, 495
BseXI GCAGC 1 cut(s) 97
BsgI GTGCAG 1 cut(s) 379
BsiSI CCGG 2 cut(s) 119, 534
BslI CCNNNNNNNGG 2 cut(s) 223, 540
BsmAI GTCTC 1 cut(s) 331
Bsp13I TCCGGA 1 cut(s) 118
Bsp1407I TGTACA 1 cut(s) 166
Bsp143I GATC 1 cut(s) 121
BspCNI CTCAG 2 cut(s) 254, 496
BspEI TCCGGA 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 400
BspMAI CTGCAG 1 cut(s) 19
BspPI GGATC 1 cut(s) 129
BsrDI GCAATG 3 cut(s) 235, 354, 442
BsrGI TGTACA 1 cut(s) 166
BssMI GATC 1 cut(s) 121
Bst4CI ACNGT 3 cut(s) 302, 392, 543
BstAUI TGTACA 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 518
BstDEI CTNAG 2 cut(s) 241, 504
BstF5I GGATG 1 cut(s) 262
BstKTI GATC 1 cut(s) 124
BstMAI GTCTC 1 cut(s) 331
BstMBI GATC 1 cut(s) 121
BstSFI CTRYAG 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 97
BtsCI GGATG 1 cut(s) 262
BtsI GCAGTG 2 cut(s) 12, 385
BtsIMutI CAGTG 3 cut(s) 12, 385, 397
Cac8I GCNNGC 1 cut(s) 518
Csp6I GTAC 2 cut(s) 167, 269
CviAII CATG 1 cut(s) 488
CviJI RGCY 3 cut(s) 144, 503, 520
CviKI_1 RGCY 3 cut(s) 144, 503, 520
CviQI GTAC 2 cut(s) 167, 269
DdeI CTNAG 2 cut(s) 241, 504
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
EcoRI GAATTC 1 cut(s) 62
FaeI CATG 1 cut(s) 491
FaiI YATR 6 cut(s) 219, 371, 404, 412, 426, 489
FatI CATG 1 cut(s) 487
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 1 cut(s) 249
Fsp4HI GCNGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 111
HapII CCGG 2 cut(s) 119, 534
Hin1II CATG 1 cut(s) 491
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 2 cut(s) 132, 525
HpaII CCGG 2 cut(s) 119, 534
HphI GGTGA 1 cut(s) 72
Hpy166II GTNNAC 2 cut(s) 167, 247
Hpy188I TCNGA 3 cut(s) 30, 255, 298
Hpy188III TCNNGA 3 cut(s) 67, 119, 176
Hpy8I GTNNAC 2 cut(s) 167, 247
HpyAV CCTTC 2 cut(s) 146, 217
HpyCH4III ACNGT 3 cut(s) 302, 392, 543
HpyCH4V TGCA 8 cut(s) 17, 46, 113, 360, 378, 410, 467, 477
HpyF3I CTNAG 2 cut(s) 241, 504
Hsp92II CATG 1 cut(s) 491
Kpn2I TCCGGA 1 cut(s) 118
Kzo9I GATC 1 cut(s) 121
LmnI GCTCC 1 cut(s) 432
LpnPI CCDG 4 cut(s) 132, 276, 471, 482
Lsp1109I GCAGC 1 cut(s) 97
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MluCI AATT 3 cut(s) 62, 72, 310
MnlI CCTC 6 cut(s) 150, 217, 298, 348, 494, 499
MroI TCCGGA 1 cut(s) 118
MroXI GAANNNNTTC 1 cut(s) 76
MseI TTAA 2 cut(s) 39, 510
MslI CAYNNNNRTG 1 cut(s) 177
MspI CCGG 2 cut(s) 119, 534
NdeII GATC 1 cut(s) 121
NlaIII CATG 1 cut(s) 491
NlaIV GGNNCC 1 cut(s) 400
PdmI GAANNNNTTC 1 cut(s) 76
PfeI GAWTC 2 cut(s) 132, 525
PkrI GCNGC 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 400
PsrI GAACNNNNNNTAC 2 cut(s) 464, 496
PstI CTGCAG 1 cut(s) 19
RsaI GTAC 2 cut(s) 168, 270
RsaNI GTAC 2 cut(s) 167, 269
RseI CAYNNNNRTG 1 cut(s) 177
SaqAI TTAA 2 cut(s) 39, 510
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 121
SetI ASST 8 cut(s) 104, 209, 290, 359, 376, 486, 505, 510
SfcI CTRYAG 1 cut(s) 15
SmiMI CAYNNNNRTG 1 cut(s) 177
Sse9I AATT 3 cut(s) 62, 72, 310
TaaI ACNGT 3 cut(s) 302, 392, 543
TaqII GACCGA 1 cut(s) 36
TasI AATT 3 cut(s) 62, 72, 310
TatI WGTACW 1 cut(s) 166
TfiI GAWTC 2 cut(s) 132, 525
Tru1I TTAA 2 cut(s) 39, 510
Tru9I TTAA 2 cut(s) 39, 510
TscAI CASTG 3 cut(s) 19, 385, 397
TseI GCWGC 1 cut(s) 110
TspRI CASTG 3 cut(s) 19, 385, 397
XapI RAATTY 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.