Prupe.7G019500_v2.0.a1

Rae1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001035
Physical Location & Seq
Forward (+)
2897944 .. 2903872
5929 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G019500.2

Sequence Viewer

Length: 1050 bp
ATGTCGAGTTTCATGGCTGCTGCAAATTTAAATTCAAATCCAAATCCAAACAAGTCCTTTGAGGTCGCTCAACCTCCAAACGACTCCATATCAAGCCTAAGTTTCAGTCCCAAGAGCAACATTCTGGTCGCCACCTCCTGGGACAACCAGGTGCGATGCTGGGAGATACTCCAGAGCGGAACAAATCTTGCCAGTCAGCCCAAGGCAGCGATATCCCATGACCATCCGGTTTTGTGCTCAACTTGGAAAGACGATGGAACGACTGTGTTCTCTGGAGGTTGTGACAAGCAAGTTAAGATGTGGCCTTTGGGTGGCCAGCCAGTAACTGTTGCCATGCATGATGCACCCATTAAAGAGATTGCTTGGATCCCTGAGATGAGCCTCTTAGTCACAGGAAGCTGGGACAAGACTATGAAGTATTGGGACGTGAGGCAGCCAAATCCAGTGCATACCCAACAACTACCTGAGCGCTGTTATGCTTTATCAGTGAGATACCCTCTAATGGTTGTTGGCACAGCAGACAGAAATCTGATTGTTTTTAACTTGCAGAACCCACAGACTGAATTCAAGAGAATTCTTTCGCCCCTCAAGTATCAAACAAGGTGTGTTGCTGCATTTCCTGATCAGCAAGGATTCTTGGTTGGCTCCATTGAAGGGAGGGTTGGCGTACATCATCTGGATGAACAACAACAAAATAAAAACTTTACCTTTAAGTGCCATAGAGAGGGCAGCGAGATATACTCAGTCAACTCTCTGAACTTCCATCCAGTGCATCACACATTTGCTACTGCTGGTTCTGATGGTTCTTTCAATTTTTGGGATAAGGATAGCAAACAGAGACTAAAGGCAATGTCAAGGTGCAATCAACCTATACCTTGCAGTACATTCAACAATGATGGTTCCATATTTGCATATGCGGTTTGCTATGATTGGAGCAAGGGTGCTGAAAATCATAATCCAGCTACCGCAAAGAACTACATTTTCCTCCATGTGCCACAGGAAGCTGAGGTTAAGAGCAAACCACGAGTCAACACTGGTGGAAAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05164 map03013 map05164
Pfam Domains
Protein Families
WD40

Protein Analysis

350

Amino Acids

39.06

Weight (kDa)

8.5

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 138
AccBSI CCGCTC 1 cut(s) 177
AciI CCGC 3 cut(s) 177, 917, 966
AclWI GGATC 2 cut(s) 361, 374
AcoI YGGCCR 1 cut(s) 313
AcsI RAATTY 4 cut(s) 25, 31, 563, 573
AfaI GTAC 2 cut(s) 669, 883
AfeI AGCGCT 1 cut(s) 470
AfiI CCNNNNNNNGG 5 cut(s) 138, 311, 502, 654, 724
AgsI TTSAA 5 cut(s) 36, 568, 653, 811, 889
AjiI CACGTC 1 cut(s) 427
AjnI CCWGG 2 cut(s) 137, 147
AjuI GAANNNNNNNTTGG 2 cut(s) 645, 677
AluBI AGCT 3 cut(s) 399, 962, 1004
AluI AGCT 3 cut(s) 399, 962, 1004
Alw21I GWGCWC 1 cut(s) 239
Alw26I GTCTC 1 cut(s) 832
AlwI GGATC 2 cut(s) 361, 374
AlwNI CAGNNNCTG 1 cut(s) 326
Aor51HI AGCGCT 1 cut(s) 470
AoxI GGCC 2 cut(s) 302, 313
ApeKI GCWGC 6 cut(s) 17, 20, 206, 433, 611, 729
ApoI RAATTY 4 cut(s) 25, 31, 563, 573
ArsI GACNNNNNNTTYG 2 cut(s) 1011, 1043
Asp700I GAANNNNTTC 1 cut(s) 577
AspLEI GCGC 1 cut(s) 471
BalI TGGCCA 1 cut(s) 315
BamHI GGATCC 1 cut(s) 366
BauI CACGAG 1 cut(s) 1023
Bbv12I GWGCWC 1 cut(s) 239
BbvCI CCTCAGC 1 cut(s) 1005
BbvI GCAGC 6 cut(s) 4, 7, 218, 445, 598, 741
BccI CCATC 5 cut(s) 231, 248, 771, 794, 890
BciT130I CCWGG 2 cut(s) 139, 149
BclI TGATCA 1 cut(s) 622
BcoDI GTCTC 1 cut(s) 832
BfoI RGCGCY 1 cut(s) 472
BisI GCNGC 6 cut(s) 18, 21, 207, 434, 612, 730
BlsI GCNGC 6 cut(s) 19, 22, 208, 435, 613, 731
Bme1390I CCNGG 2 cut(s) 139, 149
BmgBI CACGTC 1 cut(s) 427
BmiI GGNNCC 3 cut(s) 368, 646, 901
BmrFI CCNGG 2 cut(s) 139, 149
BmsI GCATC 3 cut(s) 146, 331, 781
BplI GAGNNNNNCTC 4 cut(s) 481, 513, 725, 757
BpmI CTGGAG 2 cut(s) 155, 294
Bpu10I CCTNAGC 2 cut(s) 465, 1005
BpuEI CTTGAG 1 cut(s) 572
BsaJI CCNNGG 2 cut(s) 138, 201
BsaWI WCCGGW 1 cut(s) 226
BsaXI ACNNNNNCTCC 2 cut(s) 925, 955
Bsc4I CCNNNNNNNGG 5 cut(s) 138, 311, 502, 654, 724
Bse1I ACTGG 5 cut(s) 192, 320, 443, 767, 1039
Bse3DI GCAATG 1 cut(s) 855
BseBI CCWGG 2 cut(s) 139, 149
BseDI CCNNGG 2 cut(s) 138, 201
BseGI GGATG 3 cut(s) 223, 685, 763
BseLI CCNNNNNNNGG 5 cut(s) 138, 311, 502, 654, 724
BseMI GCAATG 1 cut(s) 855
BseMII CTCAG 4 cut(s) 363, 456, 756, 996
BseNI ACTGG 5 cut(s) 192, 320, 443, 767, 1039
BseXI GCAGC 6 cut(s) 4, 7, 218, 445, 598, 741
BseYI CCCAGC 2 cut(s) 159, 399
BshFI GGCC 2 cut(s) 304, 315
BsiHKAI GWGCWC 1 cut(s) 239
BsiSI CCGG 1 cut(s) 227
BslFI GGGAC 4 cut(s) 93, 155, 416, 437
BslI CCNNNNNNNGG 5 cut(s) 138, 311, 502, 654, 724
BsmAI GTCTC 1 cut(s) 832
BsmFI GGGAC 4 cut(s) 93, 155, 416, 437
BsnI GGCC 2 cut(s) 304, 315
Bsp1286I GDGCHC 1 cut(s) 239
Bsp143I GATC 2 cut(s) 366, 622
BspACI CCGC 3 cut(s) 177, 917, 966
BspANI GGCC 2 cut(s) 304, 315
BspCNI CTCAG 4 cut(s) 364, 457, 755, 997
BspLI GGNNCC 3 cut(s) 368, 646, 901
BspPI GGATC 2 cut(s) 361, 374
BsrBI CCGCTC 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 855
BsrI ACTGG 5 cut(s) 192, 320, 443, 767, 1039
BssECI CCNNGG 2 cut(s) 138, 201
BssMI GATC 2 cut(s) 366, 622
BssSI CACGAG 1 cut(s) 1023
BssT1I CCWWGG 1 cut(s) 201
Bst2BI CACGAG 1 cut(s) 1023
Bst2UI CCWGG 2 cut(s) 139, 149
Bst4CI ACNGT 2 cut(s) 265, 328
BstC8I GCNNGC 1 cut(s) 317
BstDEI CTNAG 6 cut(s) 98, 372, 385, 465, 742, 1005
BstF5I GGATG 3 cut(s) 223, 685, 763
BstH2I RGCGCY 1 cut(s) 472
BstHHI GCGC 1 cut(s) 471
BstKTI GATC 2 cut(s) 369, 625
BstMAI GTCTC 1 cut(s) 832
BstMBI GATC 2 cut(s) 366, 622
BstNI CCWGG 2 cut(s) 139, 149
BstSCI CCNGG 2 cut(s) 137, 147
BstV1I GCAGC 6 cut(s) 4, 7, 218, 445, 598, 741
BstX2I RGATCY 1 cut(s) 366
BstYI RGATCY 1 cut(s) 366
BsuRI GGCC 2 cut(s) 304, 315
BtgZI GCGATG 1 cut(s) 169
BtrI CACGTC 1 cut(s) 427
BtsCI GGATG 3 cut(s) 223, 685, 763
BtsIMutI CAGTG 4 cut(s) 450, 492, 774, 1032
Cac8I GCNNGC 1 cut(s) 317
CaiI CAGNNNCTG 1 cut(s) 326
CfoI GCGC 1 cut(s) 471
CsiI ACCWGGT 1 cut(s) 147
Csp6I GTAC 2 cut(s) 668, 882
CspCI CAANNNNNGTGG 1 cut(s) 1018
CviAII CATG 5 cut(s) 13, 218, 334, 338, 989
CviQI GTAC 2 cut(s) 668, 882
DdeI CTNAG 6 cut(s) 98, 372, 385, 465, 742, 1005
DpnI GATC 2 cut(s) 368, 624
DpnII GATC 2 cut(s) 366, 622
DraI TTTAAA 1 cut(s) 30
EaeI YGGCCR 1 cut(s) 313
Eco130I CCWWGG 1 cut(s) 201
Eco32I GATATC 1 cut(s) 213
Eco47III AGCGCT 1 cut(s) 470
EcoRI GAATTC 2 cut(s) 563, 573
EcoRII CCWGG 2 cut(s) 137, 147
EcoRV GATATC 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 201
EcoT22I ATGCAT 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 5 cut(s) 16, 221, 337, 341, 992
FaqI GGGAC 4 cut(s) 93, 155, 416, 437
FatI CATG 5 cut(s) 12, 217, 333, 337, 988
FauNDI CATATG 1 cut(s) 913
FbaI TGATCA 1 cut(s) 622
Fnu4HI GCNGC 6 cut(s) 18, 21, 207, 434, 612, 730
FokI GGATG 3 cut(s) 210, 692, 750
Fsp4HI GCNGC 6 cut(s) 18, 21, 207, 434, 612, 730
GlaI GCGC 1 cut(s) 470
GluI GCNGC 6 cut(s) 18, 21, 207, 434, 612, 730
GsaI CCCAGC 2 cut(s) 163, 403
GsuI CTGGAG 2 cut(s) 155, 294
HaeII RGCGCY 1 cut(s) 472
HaeIII GGCC 2 cut(s) 304, 315
HapII CCGG 1 cut(s) 227
HhaI GCGC 1 cut(s) 471
Hin1II CATG 5 cut(s) 16, 221, 337, 341, 992
Hin6I GCGC 1 cut(s) 469
HinP1I GCGC 1 cut(s) 469
HincII GTYRAC 2 cut(s) 748, 1030
HindII GTYRAC 2 cut(s) 748, 1030
HinfI GANTC 3 cut(s) 83, 633, 1026
HpaII CCGG 1 cut(s) 227
Hpy166II GTNNAC 2 cut(s) 748, 1030
Hpy188I TCNGA 3 cut(s) 531, 756, 799
Hpy188III TCNNGA 5 cut(s) 172, 273, 568, 620, 677
Hpy8I GTNNAC 2 cut(s) 748, 1030
HpyAV CCTTC 1 cut(s) 647
HpyCH4III ACNGT 2 cut(s) 265, 328
HpyCH4IV ACGT 1 cut(s) 426
HpyF3I CTNAG 6 cut(s) 98, 372, 385, 465, 742, 1005
HpySE526I ACGT 1 cut(s) 426
Hsp92II CATG 5 cut(s) 16, 221, 337, 341, 992
HspAI GCGC 1 cut(s) 469
Ksp22I TGATCA 1 cut(s) 622
Kzo9I GATC 2 cut(s) 366, 622
LmnI GCTCC 2 cut(s) 650, 933
Lsp1109I GCAGC 6 cut(s) 4, 7, 218, 445, 598, 741
LweI GCATC 3 cut(s) 146, 331, 781
MabI ACCWGGT 1 cut(s) 147
MaeII ACGT 1 cut(s) 426
MaeIII GTNAC 3 cut(s) 281, 322, 388
MalI GATC 2 cut(s) 368, 624
MbiI CCGCTC 1 cut(s) 177
MboI GATC 2 cut(s) 366, 622
MflI RGATCY 1 cut(s) 366
MhlI GDGCHC 1 cut(s) 239
MlsI TGGCCA 1 cut(s) 315
MluCI AATT 5 cut(s) 25, 31, 563, 573, 811
MluNI TGGCCA 1 cut(s) 315
MlyI GAGTC 2 cut(s) 77, 1035
Mox20I TGGCCA 1 cut(s) 315
Mph1103I ATGCAT 1 cut(s) 339
MroXI GAANNNNTTC 1 cut(s) 577
MscI TGGCCA 1 cut(s) 315
MseI TTAA 6 cut(s) 29, 294, 351, 540, 711, 1011
MslI CAYNNNNRTG 1 cut(s) 678
Msp20I TGGCCA 1 cut(s) 315
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 2 cut(s) 139, 149
MvaI CCWGG 2 cut(s) 139, 149
NdeI CATATG 1 cut(s) 913
NdeII GATC 2 cut(s) 366, 622
NlaIII CATG 5 cut(s) 16, 221, 337, 341, 992
NlaIV GGNNCC 3 cut(s) 368, 646, 901
NmuCI GTSAC 2 cut(s) 281, 388
NsiI ATGCAT 1 cut(s) 339
PdmI GAANNNNTTC 1 cut(s) 577
PfeI GAWTC 1 cut(s) 633
PflMI CCANNNNNTGG 1 cut(s) 138
PkrI GCNGC 6 cut(s) 19, 22, 208, 435, 613, 731
PleI GAGTC 2 cut(s) 77, 1034
PpsI GAGTC 2 cut(s) 77, 1034
Psp6I CCWGG 2 cut(s) 137, 147
PspFI CCCAGC 2 cut(s) 159, 399
PspGI CCWGG 2 cut(s) 137, 147
PspN4I GGNNCC 3 cut(s) 368, 646, 901
PstNI CAGNNNCTG 1 cut(s) 326
PsuI RGATCY 1 cut(s) 366
RsaI GTAC 2 cut(s) 669, 883
RsaNI GTAC 2 cut(s) 668, 882
RseI CAYNNNNRTG 1 cut(s) 678
SaqAI TTAA 6 cut(s) 29, 294, 351, 540, 711, 1011
SatI GCNGC 6 cut(s) 18, 21, 207, 434, 612, 730
Sau3AI GATC 2 cut(s) 366, 622
SchI GAGTC 2 cut(s) 77, 1035
ScrFI CCNGG 2 cut(s) 139, 149
SduI GDGCHC 1 cut(s) 239
SexAI ACCWGGT 1 cut(s) 147
SfaNI GCATC 3 cut(s) 146, 331, 781
SmiI ATTTAAAT 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 678
SmlI CTYRAG 1 cut(s) 587
SmoI CTYRAG 1 cut(s) 587
Sse9I AATT 5 cut(s) 25, 31, 563, 573, 811
SsiI CCGC 3 cut(s) 177, 917, 966
StyD4I CCNGG 2 cut(s) 137, 147
StyI CCWWGG 1 cut(s) 201
SwaI ATTTAAAT 1 cut(s) 30
TaaI ACNGT 2 cut(s) 265, 328
TaiI ACGT 1 cut(s) 429
TaqI TCGA 1 cut(s) 5
TasI AATT 5 cut(s) 25, 31, 563, 573, 811
TatI WGTACW 1 cut(s) 881
TfiI GAWTC 1 cut(s) 633
Tru1I TTAA 6 cut(s) 29, 294, 351, 540, 711, 1011
Tru9I TTAA 6 cut(s) 29, 294, 351, 540, 711, 1011
TscAI CASTG 4 cut(s) 450, 492, 774, 1039
TseFI GTSAC 2 cut(s) 281, 388
TseI GCWGC 6 cut(s) 17, 20, 206, 433, 611, 729
Tsp45I GTSAC 2 cut(s) 281, 388
TspDTI ATGAA 2 cut(s) 428, 696
TspRI CASTG 4 cut(s) 450, 492, 774, 1039
Van91I CCANNNNNTGG 1 cut(s) 138
XapI RAATTY 4 cut(s) 25, 31, 563, 573
XmnI GAANNNNTTC 1 cut(s) 577
Zsp2I ATGCAT 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.