Rorug06G0488000

Rae1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001035
Physical Location & Seq
Forward (+)
60654034 .. 60654870
837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0488000.1

Sequence Viewer

Length: 336 bp
ATGGCCGCCACTACCTCCTCCTCCAACTGCTCAAACTTCTTCAACTTCCGATCTAATACTACGCCAAAGGTCCGAGTCTCATCAAGCCACGGCTGTCGTGGCAAGGTTGATGGGGTGGGGATGTGGCTCATCAACAGTGTCTCAGCTGCTTTCTTTGCTTCCTTGGAGCGATGCTCTTGCATCCGCATCGCTACCAACGACGATGCCGCTGACGACTCCAACGACTTGCCGTTGATCTTTAACGACGGGAATCTTGAACGACATTATATCGGTGACACCGCCACTAGCCGGAGGAGAACGGCCGACAAAGGGAAGAAGGGTATTACTACAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05164 map03013 map05164
Pfam Domains
Protein Families
WD40

Protein Analysis

111

Amino Acids

11.99

Weight (kDa)

8.84

Isoelectric Point (pI)

28.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 6, 184, 207, 279
AcoI YGGCCR 2 cut(s) 3, 300
AfiI CCNNNNNNNGG 2 cut(s) 288, 309
AgsI TTSAA 2 cut(s) 43, 257
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
Alw26I GTCTC 2 cut(s) 82, 145
AoxI GGCC 2 cut(s) 3, 300
ApeKI GCWGC 1 cut(s) 146
AspS9I GGNCC 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 284
AvaII GGWCC 1 cut(s) 70
BbvI GCAGC 1 cut(s) 133
BccI CCATC 1 cut(s) 104
BceAI ACGGC 3 cut(s) 106, 214, 315
BcgI CGANNNNNNTGC 4 cut(s) 159, 169, 193, 203
BcoDI GTCTC 2 cut(s) 82, 145
BfaI CTAG 1 cut(s) 285
BisI GCNGC 3 cut(s) 6, 147, 207
BlsI GCNGC 3 cut(s) 7, 148, 208
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 70
BmsI GCATC 4 cut(s) 161, 189, 193, 195
BplI GAGNNNNNCTC 2 cut(s) 158, 190
BsaJI CCNNGG 2 cut(s) 88, 162
Bsc4I CCNNNNNNNGG 2 cut(s) 288, 309
BseDI CCNNGG 2 cut(s) 88, 162
BseGI GGATG 2 cut(s) 126, 180
BseLI CCNNNNNNNGG 2 cut(s) 288, 309
BseMII CTCAG 1 cut(s) 156
BseRI GAGGAG 3 cut(s) 7, 10, 307
BseX3I CGGCCG 1 cut(s) 300
BseXI GCAGC 1 cut(s) 133
Bsh1285I CGRYCG 1 cut(s) 303
BshFI GGCC 2 cut(s) 5, 302
BsiEI CGRYCG 1 cut(s) 303
BsiSI CCGG 1 cut(s) 289
BslI CCNNNNNNNGG 2 cut(s) 288, 309
BsmAI GTCTC 2 cut(s) 82, 145
BsnI GGCC 2 cut(s) 5, 302
Bsp143I GATC 2 cut(s) 50, 234
BspACI CCGC 4 cut(s) 6, 184, 207, 279
BspANI GGCC 2 cut(s) 5, 302
BspCNI CTCAG 1 cut(s) 155
BssECI CCNNGG 2 cut(s) 88, 162
BssMI GATC 2 cut(s) 50, 234
BssT1I CCWWGG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 137
BstDEI CTNAG 1 cut(s) 142
BstDSI CCRYGG 1 cut(s) 88
BstF5I GGATG 2 cut(s) 126, 180
BstKTI GATC 2 cut(s) 53, 237
BstMAI GTCTC 2 cut(s) 82, 145
BstMBI GATC 2 cut(s) 50, 234
BstMCI CGRYCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 2 cut(s) 99, 155
BstV1I GCAGC 1 cut(s) 133
BstZI CGGCCG 1 cut(s) 300
BsuRI GGCC 2 cut(s) 5, 302
BtgI CCRYGG 1 cut(s) 88
BtgZI GCGATG 2 cut(s) 172, 184
BtsCI GGATG 2 cut(s) 126, 180
BtsIMutI CAGTG 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 70
CviJI RGCY 7 cut(s) 5, 87, 93, 127, 146, 288, 302
CviKI_1 RGCY 7 cut(s) 5, 87, 93, 127, 146, 288, 302
DdeI CTNAG 1 cut(s) 142
DpnI GATC 2 cut(s) 52, 236
DpnII GATC 2 cut(s) 50, 234
EaeI YGGCCR 2 cut(s) 3, 300
EagI CGGCCG 1 cut(s) 300
EclXI CGGCCG 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 70
Eco52I CGGCCG 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
FaiI YATR 1 cut(s) 267
Fnu4HI GCNGC 3 cut(s) 6, 147, 207
FokI GGATG 2 cut(s) 133, 167
Fsp4HI GCNGC 3 cut(s) 6, 147, 207
FspBI CTAG 1 cut(s) 285
GluI GCNGC 3 cut(s) 6, 147, 207
HaeIII GGCC 2 cut(s) 5, 302
HapII CCGG 1 cut(s) 289
HinfI GANTC 3 cut(s) 75, 215, 250
HpaII CCGG 1 cut(s) 289
HphI GGTGA 1 cut(s) 284
Hpy188I TCNGA 2 cut(s) 50, 74
Hpy188III TCNNGA 1 cut(s) 254
Hpy99I CGWCG 2 cut(s) 203, 248
HpyAV CCTTC 1 cut(s) 310
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4V TGCA 1 cut(s) 180
HpyF10VI GCNNNNNNNGC 2 cut(s) 99, 155
HpyF3I CTNAG 1 cut(s) 142
Kzo9I GATC 2 cut(s) 50, 234
LmnI GCTCC 1 cut(s) 166
LpnPI CCDG 1 cut(s) 302
Lsp1109I GCAGC 1 cut(s) 133
LweI GCATC 4 cut(s) 161, 189, 193, 195
MaeI CTAG 1 cut(s) 285
MaeIII GTNAC 1 cut(s) 272
MalI GATC 2 cut(s) 52, 236
MboI GATC 2 cut(s) 50, 234
MboII GAAGA 2 cut(s) 31, 325
MlyI GAGTC 2 cut(s) 84, 209
MmeI TCCRAC 2 cut(s) 48, 243
MnlI CCTC 4 cut(s) 25, 28, 31, 285
MseI TTAA 2 cut(s) 240, 334
MspA1I CMGCKG 2 cut(s) 146, 209
MspI CCGG 1 cut(s) 289
MwoI GCNNNNNNNGC 2 cut(s) 99, 155
NdeII GATC 2 cut(s) 50, 234
NmuCI GTSAC 1 cut(s) 272
PcsI WCGNNNNNNNCGW 2 cut(s) 195, 219
PfeI GAWTC 1 cut(s) 250
PkrI GCNGC 3 cut(s) 7, 148, 208
PleI GAGTC 2 cut(s) 83, 209
PpsI GAGTC 2 cut(s) 83, 209
PspPI GGNCC 1 cut(s) 70
PvuII CAGCTG 1 cut(s) 146
SaqAI TTAA 2 cut(s) 240, 334
SatI GCNGC 3 cut(s) 6, 147, 207
Sau3AI GATC 2 cut(s) 50, 234
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 2 cut(s) 84, 209
SetI ASST 4 cut(s) 17, 72, 108, 148
SfaNI GCATC 4 cut(s) 161, 189, 193, 195
SinI GGWCC 1 cut(s) 70
SsiI CCGC 4 cut(s) 6, 184, 207, 279
SspMI CTAG 1 cut(s) 285
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 137
TauI GCSGC 2 cut(s) 8, 209
TfiI GAWTC 1 cut(s) 250
Tru1I TTAA 2 cut(s) 240, 334
Tru9I TTAA 2 cut(s) 240, 334
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 272
TspRI CASTG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 70
XcmI CCANNNNNNNNNTGG 1 cut(s) 95
XspI CTAG 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.