AT1G80670

Transducin family protein WD-40 repeat family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
30320525 .. 30323902
3378 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G80670.1

Sequence Viewer

Length: 1050 bp
ATGGCAACTTTTGGTGCGCCTGCTACCGCCAACAGTAACCCTAACAAATCCTACGAGGTTACTCCATCACCGGCAGATTCTATTTCGAGCTTAAGTTTTAGTCCAAGAGCTGATATACTTGTGGCCACTTCATGGGACAATCAGGTGAGGTGTTGGGAAATATCCCGTAGTGGAGCCTCTCTAGCCAGTGCTCCTAAAGCATCAATATCACATGATCAGCCGGTTTTATGTTCTGCTTGGAAAGATGATGGAACCACAGTCTTTAGCGGTGGATGTGATAAGCAAGCAAAAATGTGGCCCTTGTTGTCTGGTGGTCAACCTGTAACTGTTGCTATGCATGAGGGTCCTATCGCAGCTATGGCTTGGATCCCGGGAATGAATCTCCTTGCAACTGGAAGTTGGGATAAAACTTTGAAATATTGGGACACAAGACAGCAAAATCCTGTACATACCCAACAGCTTCCAGACAAATGTTATACATTGTCTGTGAAACATCCTCTGATGGTTGTCGGGACTGCCGATAGAAATCTGATAGTCTTCAACTTGCAAAATCCTCAGACTGAGTTTAAGAGAATCCAATCCCCACTGAAGTACCAGACGAGGTGTGTTACTGCCTTCCCTGATCAGCAAGGTTTTTTGGTTGGTTCAATTGAGGGGCGGGTTGGTGTTCATCATCTGGATGATTCTCAACAGAGCAAAAACTTCACATTCAAATGCCACAGAGATGGAAATGATATATATTCTGTCAACTCTCTGAATTTCCACCCGGTACATGGCACTTTTGCAACTGCTGGGTCAGATGGTGCTTTCAATTTCTGGGACAAAGATAGTAAACAAAGACTCAAGGCCATGTCGAGGTGCAATCAGCCAATTCCATGCAGCTCGTTCAACCACGATGGATCGATATATGCATATGCGGCTTGCTATGACTGGAGCAAAGGTGCAGAAAATCACAACCCGGCGACTGCAAAAAGCAGCATTTTCTTGCACCTGCCACAGGAAAGCGAGGTTAAGGCCAAGCCAAGAGTTGGAGCAACCGGCAGAAAATGA

Protein Analysis

349

Amino Acids

38.27

Weight (kDa)

8.65

Isoelectric Point (pI)

41.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_Prp19 PF24814 21 - 163 4.9e-12 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 22 - 152 2.8e-12 CDC20/Fizzy WD40 domain
Beta-prop_EML PF23409 23 - 173 3.1e-07 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR3_1st PF25173 25 - 181 3.7e-18 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 26 - 235 1.2e-19 WDR5 beta-propeller domain
WDR55 PF24796 26 - 230 2.3e-17 WDR55
Beta-prop_WDR3_2nd PF25172 28 - 180 4.1e-10 WDR3 second beta-propeller domain
WD40_Gbeta PF25391 40 - 146 1.1e-07 G protein beta WD-40 repeat protein
Beta-prop_THOC3 PF25174 71 - 307 9.5e-32 THOC3 beta-propeller domain
EIF3I PF24805 71 - 284 5.4e-06 EIF3I
WD40_WDHD1_1st PF24817 72 - 159 8.7e-10 WDHD1 first WD40 domain
WD40 PF00400 112 - 142 4.6e-06 WD domain, G-beta repeat
Beta-prop_EML_2 PF23414 119 - 234 2.2e-08 Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st PF24817 154 - 288 2.9e-08 WDHD1 first WD40 domain
WD40_Prp19 PF24814 164 - 306 2.4e-12 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 171 - 302 5.2e-06 WDR3 first beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 999
Acc36I ACCTGC 1 cut(s) 999
AccB7I CCANNNNNTGG 2 cut(s) 132, 1028
AciI CCGC 4 cut(s) 27, 267, 658, 917
AclWI GGATC 3 cut(s) 361, 374, 907
AcoI YGGCCR 1 cut(s) 123
AcsI RAATTY 1 cut(s) 757
AcuI CTGAAG 1 cut(s) 608
AfaI GTAC 3 cut(s) 447, 593, 771
AfiI CCNNNNNNNGG 5 cut(s) 132, 773, 855, 997, 1028
AflII CTTAAG 1 cut(s) 91
AgsI TTSAA 6 cut(s) 415, 541, 648, 712, 811, 889
AluBI AGCT 5 cut(s) 90, 110, 356, 460, 882
AluI AGCT 5 cut(s) 90, 110, 356, 460, 882
Alw21I GWGCWC 1 cut(s) 193
AlwI GGATC 3 cut(s) 361, 374, 907
Ama87I CYCGRG 1 cut(s) 370
AoxI GGCC 4 cut(s) 123, 296, 846, 1014
ApeKI GCWGC 3 cut(s) 353, 879, 975
ApoI RAATTY 1 cut(s) 757
AspLEI GCGC 1 cut(s) 19
AspS9I GGNCC 2 cut(s) 297, 344
AsuC2I CCSGG 4 cut(s) 371, 372, 767, 959
AsuHPI GGTGA 2 cut(s) 60, 157
AvaI CYCGRG 1 cut(s) 370
AvaII GGWCC 1 cut(s) 344
BaeI ACNNNNGTAYC 2 cut(s) 575, 608
BalI TGGCCA 1 cut(s) 125
BamHI GGATCC 1 cut(s) 366
BbsI GAAGAC 1 cut(s) 529
Bbv12I GWGCWC 1 cut(s) 193
BbvI GCAGC 3 cut(s) 365, 891, 987
BccI CCATC 6 cut(s) 73, 242, 496, 719, 794, 890
BclI TGATCA 2 cut(s) 214, 622
BcnI CCSGG 4 cut(s) 371, 372, 767, 959
BfaI CTAG 1 cut(s) 182
BfrI CTTAAG 1 cut(s) 91
BfuAI ACCTGC 1 cut(s) 999
BisI GCNGC 4 cut(s) 354, 880, 918, 976
BlsI GCNGC 4 cut(s) 355, 881, 919, 977
Bme1390I CCNGG 4 cut(s) 371, 372, 767, 959
Bme18I GGWCC 1 cut(s) 344
BmeT110I CYCGRG 1 cut(s) 370
BmgT120I GGNCC 2 cut(s) 297, 344
BmiI GGNNCC 4 cut(s) 175, 253, 345, 368
BmrFI CCNGG 4 cut(s) 371, 372, 767, 959
BmsI GCATC 1 cut(s) 209
BpiI GAAGAC 1 cut(s) 529
BpmI CTGGAG 1 cut(s) 952
BpuEI CTTGAG 1 cut(s) 827
BpuMI CCSGG 4 cut(s) 371, 372, 767, 959
Bsa29I ATCGAT 1 cut(s) 902
BsaBI GATNNNNATC 1 cut(s) 525
BsaJI CCNNGG 1 cut(s) 370
BsaXI ACNNNNNCTCC 2 cut(s) 925, 955
Bsc4I CCNNNNNNNGG 5 cut(s) 132, 773, 855, 997, 1028
Bse118I RCCGGY 3 cut(s) 70, 220, 1037
Bse1I ACTGG 3 cut(s) 186, 397, 935
Bse8I GATNNNNATC 1 cut(s) 525
BseCI ATCGAT 1 cut(s) 902
BseDI CCNNGG 1 cut(s) 370
BseGI GGATG 3 cut(s) 278, 493, 685
BseJI GATNNNNATC 1 cut(s) 525
BseLI CCNNNNNNNGG 5 cut(s) 132, 773, 855, 997, 1028
BseMII CTCAG 2 cut(s) 552, 569
BseNI ACTGG 3 cut(s) 186, 397, 935
BseXI GCAGC 3 cut(s) 365, 891, 987
BseYI CCCAGC 1 cut(s) 791
BsgI GTGCAG 1 cut(s) 963
BshFI GGCC 4 cut(s) 125, 298, 848, 1016
BshVI ATCGAT 1 cut(s) 902
BsiHKAI GWGCWC 1 cut(s) 193
BsiHKCI CYCGRG 1 cut(s) 370
BsiSI CCGG 6 cut(s) 71, 221, 371, 767, 959, 1038
BslFI GGGAC 4 cut(s) 149, 437, 526, 833
BslI CCNNNNNNNGG 5 cut(s) 132, 773, 855, 997, 1028
BsmFI GGGAC 4 cut(s) 149, 437, 526, 833
BsnI GGCC 4 cut(s) 125, 298, 848, 1016
BsoBI CYCGRG 1 cut(s) 370
Bsp1286I GDGCHC 1 cut(s) 193
Bsp1407I TGTACA 1 cut(s) 445
Bsp143I GATC 4 cut(s) 214, 366, 622, 899
BspACI CCGC 4 cut(s) 27, 267, 658, 917
BspANI GGCC 4 cut(s) 125, 298, 848, 1016
BspCNI CTCAG 2 cut(s) 553, 568
BspDI ATCGAT 1 cut(s) 902
BspLI GGNNCC 4 cut(s) 175, 253, 345, 368
BspMI ACCTGC 1 cut(s) 999
BspPI GGATC 3 cut(s) 361, 374, 907
BspTI CTTAAG 1 cut(s) 91
BsrFI RCCGGY 3 cut(s) 70, 220, 1037
BsrGI TGTACA 1 cut(s) 445
BsrI ACTGG 3 cut(s) 186, 397, 935
BssAI RCCGGY 3 cut(s) 70, 220, 1037
BssECI CCNNGG 1 cut(s) 370
BssMI GATC 4 cut(s) 214, 366, 622, 899
Bst4CI ACNGT 3 cut(s) 35, 259, 328
BstAFI CTTAAG 1 cut(s) 91
BstAUI TGTACA 1 cut(s) 445
BstC8I GCNNGC 3 cut(s) 21, 285, 922
BstDEI CTNAG 2 cut(s) 555, 561
BstENI CCTNNNNNAGG 1 cut(s) 995
BstF5I GGATG 3 cut(s) 278, 493, 685
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 4 cut(s) 217, 369, 625, 902
BstMBI GATC 4 cut(s) 214, 366, 622, 899
BstMWI GCNNNNNNNGC 4 cut(s) 182, 197, 359, 917
BstSCI CCNGG 4 cut(s) 369, 370, 765, 957
BstV1I GCAGC 3 cut(s) 365, 891, 987
BstV2I GAAGAC 1 cut(s) 529
BstX2I RGATCY 1 cut(s) 366
BstXI CCANNNNNNTGG 1 cut(s) 725
BstYI RGATCY 1 cut(s) 366
Bsu15I ATCGAT 1 cut(s) 902
BsuRI GGCC 4 cut(s) 125, 298, 848, 1016
BsuTUI ATCGAT 1 cut(s) 902
BtsCI GGATG 3 cut(s) 278, 493, 685
BtsIMutI CAGTG 2 cut(s) 193, 584
BveI ACCTGC 1 cut(s) 999
Cac8I GCNNGC 3 cut(s) 21, 285, 922
CfoI GCGC 1 cut(s) 19
Cfr10I RCCGGY 3 cut(s) 70, 220, 1037
Cfr13I GGNCC 2 cut(s) 297, 344
Cfr9I CCCGGG 1 cut(s) 370
ClaI ATCGAT 1 cut(s) 902
Csp6I GTAC 3 cut(s) 446, 592, 770
CviAII CATG 6 cut(s) 132, 212, 338, 773, 850, 876
CviQI GTAC 3 cut(s) 446, 592, 770
DdeI CTNAG 2 cut(s) 555, 561
DpnI GATC 4 cut(s) 216, 368, 624, 901
DpnII GATC 4 cut(s) 214, 366, 622, 899
EaeI YGGCCR 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 344
Eco57I CTGAAG 1 cut(s) 608
Eco88I CYCGRG 1 cut(s) 370
EcoNI CCTNNNNNAGG 1 cut(s) 995
EcoO109I RGGNCCY 1 cut(s) 344
EcoT22I ATGCAT 2 cut(s) 339, 913
FaeI CATG 6 cut(s) 135, 215, 341, 776, 853, 879
FaqI GGGAC 4 cut(s) 149, 437, 526, 833
FatI CATG 6 cut(s) 131, 211, 337, 772, 849, 875
FauI CCCGC 1 cut(s) 651
FauNDI CATATG 1 cut(s) 913
FbaI TGATCA 2 cut(s) 214, 622
Fnu4HI GCNGC 4 cut(s) 354, 880, 918, 976
FokI GGATG 3 cut(s) 285, 480, 692
Fsp4HI GCNGC 4 cut(s) 354, 880, 918, 976
FspBI CTAG 1 cut(s) 182
GlaI GCGC 1 cut(s) 18
GluI GCNGC 4 cut(s) 354, 880, 918, 976
GsaI CCCAGC 1 cut(s) 795
GsuI CTGGAG 1 cut(s) 952
HaeIII GGCC 4 cut(s) 125, 298, 848, 1016
HapII CCGG 6 cut(s) 71, 221, 371, 767, 959, 1038
HhaI GCGC 1 cut(s) 19
Hin1II CATG 6 cut(s) 135, 215, 341, 776, 853, 879
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HincII GTYRAC 2 cut(s) 317, 748
HindII GTYRAC 2 cut(s) 317, 748
HinfI GANTC 5 cut(s) 77, 379, 573, 683, 840
HpaII CCGG 6 cut(s) 71, 221, 371, 767, 959, 1038
HphI GGTGA 2 cut(s) 60, 157
Hpy166II GTNNAC 3 cut(s) 317, 748, 833
Hpy188I TCNGA 5 cut(s) 501, 531, 558, 756, 799
Hpy188III TCNNGA 3 cut(s) 464, 511, 677
Hpy8I GTNNAC 3 cut(s) 317, 748, 833
HpyAV CCTTC 1 cut(s) 625
HpyCH4III ACNGT 3 cut(s) 35, 259, 328
HpyF10VI GCNNNNNNNGC 4 cut(s) 182, 197, 359, 917
HpyF3I CTNAG 2 cut(s) 555, 561
Hsp92II CATG 6 cut(s) 135, 215, 341, 776, 853, 879
HspAI GCGC 1 cut(s) 17
Ksp22I TGATCA 2 cut(s) 214, 622
Kzo9I GATC 4 cut(s) 214, 366, 622, 899
LmnI GCTCC 4 cut(s) 173, 196, 933, 1031
Lsp1109I GCAGC 3 cut(s) 365, 891, 987
LweI GCATC 1 cut(s) 209
MaeI CTAG 1 cut(s) 182
MaeIII GTNAC 4 cut(s) 35, 58, 322, 607
MalI GATC 4 cut(s) 216, 368, 624, 901
MboI GATC 4 cut(s) 214, 366, 622, 899
MboII GAAGA 1 cut(s) 529
MfeI CAATTG 1 cut(s) 648
MflI RGATCY 1 cut(s) 366
MhlI GDGCHC 1 cut(s) 193
MlsI TGGCCA 1 cut(s) 125
MluCI AATT 4 cut(s) 648, 757, 811, 870
MluNI TGGCCA 1 cut(s) 125
MlyI GAGTC 1 cut(s) 834
MmeI TCCRAC 1 cut(s) 1009
Mox20I TGGCCA 1 cut(s) 125
Mph1103I ATGCAT 2 cut(s) 339, 913
MscI TGGCCA 1 cut(s) 125
MseI TTAA 3 cut(s) 92, 567, 1011
MslI CAYNNNNRTG 3 cut(s) 678, 712, 723
Msp20I TGGCCA 1 cut(s) 125
MspCI CTTAAG 1 cut(s) 91
MspI CCGG 6 cut(s) 71, 221, 371, 767, 959, 1038
MspR9I CCNGG 4 cut(s) 371, 372, 767, 959
MunI CAATTG 1 cut(s) 648
MwoI GCNNNNNNNGC 4 cut(s) 182, 197, 359, 917
NciI CCSGG 4 cut(s) 371, 372, 767, 959
NdeI CATATG 1 cut(s) 913
NdeII GATC 4 cut(s) 214, 366, 622, 899
NlaIII CATG 6 cut(s) 135, 215, 341, 776, 853, 879
NlaIV GGNNCC 4 cut(s) 175, 253, 345, 368
NsiI ATGCAT 2 cut(s) 339, 913
PaqCI CACCTGC 1 cut(s) 999
PcsI WCGNNNNNNNCGW 1 cut(s) 516
PfeI GAWTC 4 cut(s) 77, 379, 573, 683
PflMI CCANNNNNTGG 2 cut(s) 132, 1028
PkrI GCNGC 4 cut(s) 355, 881, 919, 977
PleI GAGTC 1 cut(s) 834
PpsI GAGTC 1 cut(s) 834
PpuMI RGGWCCY 1 cut(s) 344
Psp5II RGGWCCY 1 cut(s) 344
PspFI CCCAGC 1 cut(s) 791
PspN4I GGNNCC 4 cut(s) 175, 253, 345, 368
PspPI GGNCC 2 cut(s) 297, 344
PspPPI RGGWCCY 1 cut(s) 344
PsuI RGATCY 1 cut(s) 366
RsaI GTAC 3 cut(s) 447, 593, 771
RsaNI GTAC 3 cut(s) 446, 592, 770
RseI CAYNNNNRTG 3 cut(s) 678, 712, 723
SaqAI TTAA 3 cut(s) 92, 567, 1011
SatI GCNGC 4 cut(s) 354, 880, 918, 976
Sau3AI GATC 4 cut(s) 214, 366, 622, 899
Sau96I GGNCC 2 cut(s) 297, 344
SchI GAGTC 1 cut(s) 834
ScrFI CCNGG 4 cut(s) 371, 372, 767, 959
SduI GDGCHC 1 cut(s) 193
SfaNI GCATC 1 cut(s) 209
SinI GGWCC 1 cut(s) 344
SmaI CCCGGG 1 cut(s) 372
SmiMI CAYNNNNRTG 3 cut(s) 678, 712, 723
SmlI CTYRAG 2 cut(s) 91, 842
SmoI CTYRAG 2 cut(s) 91, 842
Sse9I AATT 4 cut(s) 648, 757, 811, 870
SsiI CCGC 4 cut(s) 27, 267, 658, 917
SspI AATATT 1 cut(s) 419
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 4 cut(s) 369, 370, 765, 957
TaaI ACNGT 3 cut(s) 35, 259, 328
TaqI TCGA 3 cut(s) 86, 854, 902
TasI AATT 4 cut(s) 648, 757, 811, 870
TatI WGTACW 1 cut(s) 445
TauI GCSGC 1 cut(s) 920
TfiI GAWTC 4 cut(s) 77, 379, 573, 683
Tru1I TTAA 3 cut(s) 92, 567, 1011
Tru9I TTAA 3 cut(s) 92, 567, 1011
TscAI CASTG 2 cut(s) 193, 591
TseI GCWGC 3 cut(s) 353, 879, 975
TspDTI ATGAA 3 cut(s) 120, 392, 659
TspMI CCCGGG 1 cut(s) 370
TspRI CASTG 2 cut(s) 193, 591
Van91I CCANNNNNTGG 2 cut(s) 132, 1028
Vha464I CTTAAG 1 cut(s) 91
VpaK11BI GGWCC 1 cut(s) 344
XagI CCTNNNNNAGG 1 cut(s) 995
XapI RAATTY 1 cut(s) 757
XcmI CCANNNNNNNNNTGG 1 cut(s) 770
XmaI CCCGGG 1 cut(s) 370
XspI CTAG 1 cut(s) 182
Zsp2I ATGCAT 2 cut(s) 339, 913
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.