FvH4_5g31083
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013683
Physical Location & Seq
Reverse (-)
21995193 .. 21996479
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g31083.t1

Sequence Viewer

Length: 1182 bp
ATGGCTTCATGTTCTTCTTCTTCTGGGTCTAGGGAGTTGATGAGGTTGGAGGAGCTTCCGTGCGGTGTTGTGCAAACTTTTAAGCCTACCGATGCACAGCTTGTGGGCCATTATCTGTATGAGGCAATTAGATTTCCTCACCAGGACTTCTCCTATTTCTTTACGAGAGTGAAGAGGTTGGCTACCAAGGACAAGGGTAAAGGAAAACAGGGTAAGGGTCAAGGAAAACGGTGCTCTAGGACAGTTGGGTCAGGGGGGAAATGGAGCGAAAACGAGGCTTCCAAGGAGGTATATGTCGATGGTTTTCAAGAGCCCTTTGGGAGACTGAGGAAGCTCCGATACGAAAACAGTGACACAGAATTTGAGCATCACGGTGCTTGGATGATGGAGGAGTTTTCCATTGAACATCCCGGTGTAGTTTCCTCGGATTTGGTGCTGTGCCGATTGAAAAGGAATGGAAAGAGCAACAACAAAAAGAGGAAGGCTGTAGAGGATGCGGAGGTGGAGGTGAATGCTAAAAGGACAAAGTGTTTCCAAGAAGACAAACAAGTAATTTCTCATTCTCATCATGAGCAGAAACAGCAGTGGCAGCTCAACGACTTTCATGTTCAGGAACAGGGTAGTACTAGTACCCAACAGCAGCAGCAGATTCCTGCTCCTCATTTCGACAACAACTACAACTGTACTGCTGATGATGTGATTGTTTCTCCAAATGAGAGTGAACATGCAGTGTTAGATGATGATACCGGTTGGTTGCTTGACGTCATTGCATGGGATAAAGATGTAGACCCTTCCCTCTATGAAAACCACAGTTCTGCTGGTGATGATCTAACAATCACTGTAAATGAATCAACTGATTTACAGTTAGAGGAGGAGGGCGCTGATCATAATGGATCTGCATCGGAGGGAGCAGAAGGGGAGACACTACCCCCTGCCATCTTAGAACATCATACGTCTTCCTCACCATTGATGTCGCAGCAGCAGCACCTGTCCTCTGCAGATGATGATCAAGCATTTGCTTTTGCTTGTGATAATGATACCATTCCTATGGATGGTGCCTCCTGCTTTCAGTTTGATGACAGTAGCAACTTCTACTATCAGTACTTATCTGGAGAAGCTACACTACCACAGTCAGCACCTCCTCTTGGAGATGACAATGGGCTACCACGTTTAGGATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

394

Amino Acids

43.91

Weight (kDa)

4.83

Isoelectric Point (pI)

47.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 247
AatII GACGTC 1 cut(s) 765
AccB1I GGYRCC 1 cut(s) 1055
AccI GTMKAC 1 cut(s) 786
AciI CCGC 2 cut(s) 63, 497
AclWI GGATC 1 cut(s) 901
AcsI RAATTY 1 cut(s) 359
AcyI GRCGYC 1 cut(s) 762
AfaI GTAC 4 cut(s) 625, 631, 685, 1103
AfiI CCNNNNNNNGG 3 cut(s) 1052, 1145, 1172
AgeI ACCGGT 1 cut(s) 746
AgsI TTSAA 3 cut(s) 308, 404, 448
AhlI ACTAGT 1 cut(s) 626
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 5 cut(s) 55, 100, 334, 592, 1118
AluI AGCT 5 cut(s) 55, 100, 334, 592, 1118
Alw21I GWGCWC 1 cut(s) 236
Alw26I GTCTC 2 cut(s) 316, 914
AlwI GGATC 1 cut(s) 901
AlwNI CAGNNNCTG 1 cut(s) 988
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 6 cut(s) 589, 640, 643, 976, 979, 982
ApoI RAATTY 1 cut(s) 359
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
AsiGI ACCGGT 1 cut(s) 746
AspLEI GCGC 1 cut(s) 881
AspS9I GGNCC 1 cut(s) 106
AsuC2I CCSGG 1 cut(s) 411
AsuHPI GGTGA 4 cut(s) 131, 520, 833, 954
BanI GGYRCC 1 cut(s) 1055
BanII GRGCYC 1 cut(s) 315
BarI GAAGNNNNNNTAC 4 cut(s) 323, 355, 1107, 1139
BbsI GAAGAC 2 cut(s) 546, 948
Bbv12I GWGCWC 1 cut(s) 236
BbvI GCAGC 6 cut(s) 601, 652, 655, 988, 991, 994
BccI CCATC 4 cut(s) 293, 379, 944, 1046
BciT130I CCWGG 1 cut(s) 143
BclI TGATCA 2 cut(s) 883, 1006
BcnI CCSGG 1 cut(s) 411
BcoDI GTCTC 2 cut(s) 316, 914
BcuI ACTAGT 1 cut(s) 626
BfaI CTAG 4 cut(s) 30, 237, 627, 1180
BfmI CTRYAG 2 cut(s) 486, 996
BfoI RGCGCY 1 cut(s) 882
BisI GCNGC 6 cut(s) 590, 641, 644, 977, 980, 983
BlsI GCNGC 6 cut(s) 591, 642, 645, 978, 981, 984
BmcAI AGTACT 2 cut(s) 625, 1103
Bme1390I CCNGG 2 cut(s) 143, 411
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 1057
BmrFI CCNGG 2 cut(s) 143, 411
BmsI GCATC 4 cut(s) 82, 376, 484, 908
BpiI GAAGAC 2 cut(s) 546, 948
BpmI CTGGAG 1 cut(s) 1131
BpuMI CCSGG 1 cut(s) 411
BsaBI GATNNNNATC 2 cut(s) 898, 1005
BsaHI GRCGYC 1 cut(s) 762
BsaJI CCNNGG 3 cut(s) 186, 282, 423
BsaWI WCCGGW 1 cut(s) 746
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 3 cut(s) 1052, 1145, 1172
Bse118I RCCGGY 1 cut(s) 746
Bse3DI GCAATG 1 cut(s) 765
Bse8I GATNNNNATC 2 cut(s) 898, 1005
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 3 cut(s) 186, 282, 423
BseGI GGATG 4 cut(s) 387, 406, 499, 1057
BseJI GATNNNNATC 2 cut(s) 898, 1005
BseLI CCNNNNNNNGG 3 cut(s) 1052, 1145, 1172
BseMI GCAATG 1 cut(s) 765
BseMII CTCAG 1 cut(s) 317
BseRI GAGGAG 6 cut(s) 65, 404, 648, 884, 887, 1131
BseXI GCAGC 6 cut(s) 601, 652, 655, 988, 991, 994
BshFI GGCC 1 cut(s) 108
BshNI GGYRCC 1 cut(s) 1055
BshTI ACCGGT 1 cut(s) 746
BsiHKAI GWGCWC 1 cut(s) 236
BsiSI CCGG 2 cut(s) 411, 747
BslI CCNNNNNNNGG 3 cut(s) 1052, 1145, 1172
BsmAI GTCTC 2 cut(s) 316, 914
BsmI GAATGC 1 cut(s) 517
BsnI GGCC 1 cut(s) 108
Bsp1286I GDGCHC 2 cut(s) 236, 315
Bsp143I GATC 4 cut(s) 826, 883, 893, 1006
BspACI CCGC 2 cut(s) 63, 497
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 318
BspHI TCATGA 1 cut(s) 568
BspLI GGNNCC 1 cut(s) 1057
BspMAI CTGCAG 1 cut(s) 1000
BspPI GGATC 1 cut(s) 901
BspT107I GGYRCC 1 cut(s) 1055
BsrDI GCAATG 1 cut(s) 765
BsrFI RCCGGY 1 cut(s) 746
BssAI RCCGGY 1 cut(s) 746
BssECI CCNNGG 3 cut(s) 186, 282, 423
BssMI GATC 4 cut(s) 826, 883, 893, 1006
BssNI GRCGYC 1 cut(s) 762
BssT1I CCWWGG 2 cut(s) 186, 282
Bst2UI CCWGG 1 cut(s) 143
Bst6I CTCTTC 1 cut(s) 167
BstACI GRCGYC 1 cut(s) 762
BstDEI CTNAG 2 cut(s) 326, 940
BstF5I GGATG 4 cut(s) 387, 406, 499, 1057
BstH2I RGCGCY 1 cut(s) 882
BstHHI GCGC 1 cut(s) 881
BstKTI GATC 4 cut(s) 829, 886, 896, 1009
BstMAI GTCTC 2 cut(s) 316, 914
BstMBI GATC 4 cut(s) 826, 883, 893, 1006
BstMWI GCNNNNNNNGC 3 cut(s) 580, 589, 982
BstNI CCWGG 1 cut(s) 143
BstNSI RCATGY 1 cut(s) 728
BstSCI CCNGG 2 cut(s) 141, 409
BstSFI CTRYAG 2 cut(s) 486, 996
BstV1I GCAGC 6 cut(s) 601, 652, 655, 988, 991, 994
BstV2I GAAGAC 2 cut(s) 546, 948
BstX2I RGATCY 1 cut(s) 893
BstXI CCANNNNNNTGG 1 cut(s) 1048
BstYI RGATCY 1 cut(s) 893
BsuRI GGCC 1 cut(s) 108
BtsCI GGATG 4 cut(s) 387, 406, 499, 1057
BtsI GCAGTG 2 cut(s) 590, 735
BtsIMutI CAGTG 4 cut(s) 355, 590, 735, 837
CaiI CAGNNNCTG 1 cut(s) 988
CciI TCATGA 1 cut(s) 568
CfoI GCGC 1 cut(s) 881
Cfr10I RCCGGY 1 cut(s) 746
Cfr13I GGNCC 1 cut(s) 106
Csp6I GTAC 4 cut(s) 624, 630, 684, 1102
CspAI ACCGGT 1 cut(s) 746
CviAII CATG 5 cut(s) 9, 569, 605, 725, 771
CviQI GTAC 4 cut(s) 624, 630, 684, 1102
DdeI CTNAG 2 cut(s) 326, 940
DpnI GATC 4 cut(s) 828, 885, 895, 1008
DpnII GATC 4 cut(s) 826, 883, 893, 1006
DrdI GACNNNNNNGTC 1 cut(s) 247
DseDI GACNNNNNNGTC 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
Eco130I CCWWGG 2 cut(s) 186, 282
Eco24I GRGCYC 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 141
EcoT14I CCWWGG 2 cut(s) 186, 282
EcoT38I GRGCYC 1 cut(s) 315
ErhI CCWWGG 2 cut(s) 186, 282
FaeI CATG 5 cut(s) 12, 572, 608, 728, 774
FatI CATG 5 cut(s) 8, 568, 604, 724, 770
FbaI TGATCA 2 cut(s) 883, 1006
FblI GTMKAC 1 cut(s) 786
Fnu4HI GCNGC 6 cut(s) 590, 641, 644, 977, 980, 983
FokI GGATG 4 cut(s) 393, 394, 506, 1064
FriOI GRGCYC 1 cut(s) 315
Fsp4HI GCNGC 6 cut(s) 590, 641, 644, 977, 980, 983
FspBI CTAG 4 cut(s) 30, 237, 627, 1180
GlaI GCGC 1 cut(s) 880
GluI GCNGC 6 cut(s) 590, 641, 644, 977, 980, 983
GsuI CTGGAG 1 cut(s) 1131
HaeII RGCGCY 1 cut(s) 882
HaeIII GGCC 1 cut(s) 108
HapII CCGG 2 cut(s) 411, 747
HhaI GCGC 1 cut(s) 881
Hin1I GRCGYC 1 cut(s) 762
Hin1II CATG 5 cut(s) 12, 572, 608, 728, 774
Hin6I GCGC 1 cut(s) 879
HinP1I GCGC 1 cut(s) 879
HinfI GANTC 3 cut(s) 649, 848, 1176
HpaII CCGG 2 cut(s) 411, 747
HphI GGTGA 4 cut(s) 131, 520, 833, 954
Hpy166II GTNNAC 2 cut(s) 722, 787
Hpy188I TCNGA 3 cut(s) 338, 427, 904
Hpy188III TCNNGA 4 cut(s) 308, 569, 611, 1110
Hpy8I GTNNAC 2 cut(s) 722, 787
HpyAV CCTTC 3 cut(s) 475, 801, 908
HpyCH4IV ACGT 3 cut(s) 762, 953, 1168
HpyCH4V TGCA 6 cut(s) 73, 95, 728, 770, 899, 998
HpyF10VI GCNNNNNNNGC 3 cut(s) 580, 589, 982
HpyF3I CTNAG 2 cut(s) 326, 940
HpySE526I ACGT 3 cut(s) 762, 953, 1168
Hsp92I GRCGYC 1 cut(s) 762
Hsp92II CATG 5 cut(s) 12, 572, 608, 728, 774
HspAI GCGC 1 cut(s) 879
Ksp22I TGATCA 2 cut(s) 883, 1006
Kzo9I GATC 4 cut(s) 826, 883, 893, 1006
LmnI GCTCC 5 cut(s) 52, 264, 339, 661, 908
Lsp1109I GCAGC 6 cut(s) 601, 652, 655, 988, 991, 994
LweI GCATC 4 cut(s) 82, 376, 484, 908
MaeI CTAG 4 cut(s) 30, 237, 627, 1180
MaeII ACGT 3 cut(s) 762, 953, 1168
MaeIII GTNAC 1 cut(s) 350
MalI GATC 4 cut(s) 828, 885, 895, 1008
MboI GATC 4 cut(s) 826, 883, 893, 1006
MboII GAAGA 6 cut(s) 6, 9, 12, 184, 551, 948
MflI RGATCY 1 cut(s) 893
MhlI GDGCHC 2 cut(s) 236, 315
MluCI AATT 3 cut(s) 126, 359, 552
MmeI TCCRAC 1 cut(s) 27
MseI TTAA 1 cut(s) 81
MslI CAYNNNNRTG 3 cut(s) 372, 411, 1046
MspI CCGG 2 cut(s) 411, 747
MspR9I CCNGG 2 cut(s) 143, 411
Mva1269I GAATGC 1 cut(s) 517
MvaI CCWGG 1 cut(s) 143
MwoI GCNNNNNNNGC 3 cut(s) 580, 589, 982
NciI CCSGG 1 cut(s) 411
NdeII GATC 4 cut(s) 826, 883, 893, 1006
NlaIII CATG 5 cut(s) 12, 572, 608, 728, 774
NlaIV GGNNCC 1 cut(s) 1057
NmuCI GTSAC 1 cut(s) 350
NspI RCATGY 1 cut(s) 728
PagI TCATGA 1 cut(s) 568
PctI GAATGC 1 cut(s) 517
PfeI GAWTC 3 cut(s) 649, 848, 1176
PinAI ACCGGT 1 cut(s) 746
PkrI GCNGC 6 cut(s) 591, 642, 645, 978, 981, 984
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 1057
PspPI GGNCC 1 cut(s) 106
PstI CTGCAG 1 cut(s) 1000
PstNI CAGNNNCTG 1 cut(s) 988
PsuI RGATCY 1 cut(s) 893
RsaI GTAC 4 cut(s) 625, 631, 685, 1103
RsaNI GTAC 4 cut(s) 624, 630, 684, 1102
RseI CAYNNNNRTG 3 cut(s) 372, 411, 1046
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 6 cut(s) 590, 641, 644, 977, 980, 983
Sau3AI GATC 4 cut(s) 826, 883, 893, 1006
Sau96I GGNCC 1 cut(s) 106
ScaI AGTACT 2 cut(s) 625, 1103
ScrFI CCNGG 2 cut(s) 143, 411
SduI GDGCHC 2 cut(s) 236, 315
SfaNI GCATC 4 cut(s) 82, 376, 484, 908
SfcI CTRYAG 2 cut(s) 486, 996
SmiMI CAYNNNNRTG 3 cut(s) 372, 411, 1046
SpeI ACTAGT 1 cut(s) 626
Sse9I AATT 3 cut(s) 126, 359, 552
SsiI CCGC 2 cut(s) 63, 497
SspMI CTAG 4 cut(s) 30, 237, 627, 1180
StyD4I CCNGG 2 cut(s) 141, 409
StyI CCWWGG 2 cut(s) 186, 282
TaiI ACGT 3 cut(s) 765, 956, 1171
TaqI TCGA 2 cut(s) 297, 666
TasI AATT 3 cut(s) 126, 359, 552
TatI WGTACW 3 cut(s) 623, 683, 1101
TfiI GAWTC 3 cut(s) 649, 848, 1176
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TscAI CASTG 4 cut(s) 355, 590, 735, 844
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 6 cut(s) 589, 640, 643, 976, 979, 982
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 3 cut(s) 593, 816, 861
TspGWI ACGGA 1 cut(s) 48
TspRI CASTG 4 cut(s) 355, 590, 735, 844
XapI RAATTY 1 cut(s) 359
XceI RCATGY 1 cut(s) 728
XcmI CCANNNNNNNNNTGG 1 cut(s) 815
XmiI GTMKAC 1 cut(s) 786
XspI CTAG 4 cut(s) 30, 237, 627, 1180
ZraI GACGTC 1 cut(s) 763
ZrmI AGTACT 2 cut(s) 625, 1103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.