RLG00000019342

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0013683
Physical Location & Seq
Forward (+)
50557405 .. 50563482
6078 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019342

Sequence Viewer

Length: 666 bp
ATGGTTATGGCCCCCGCATCGGTGGTGGCTCGAAAGGAGGTTGTGAAGTTCTCCTCGATGCAAATGGTGCCAGTGGGGAGGAAAAGGAAGGTTATTCCCAAGGTTGATCGTTTCGGGAAAAAGTACTTGGCTTTTCCCGATTCGACACTTGAGGTTGAAGATAATGTCTCGCTGGTGCTGCAACATAAGCATGATAATGTCCCTGACAAAGTTGGCAAACCGGTGACGATGCTAGAGGAGGCGAATGTGACTGCTCCTGCAATGGAACTTGCAGCTGTGGAGCCACCACCGCACCAAACCCTGAAGGAAGCTCATACAATCATCACAGTAGTGCCCGATTTGGTTCCCAACCCATCCCCCACCAACTGCGAGCAATCACCATCAAATGAAGACATTGATGGTAGCACTTCCCCTCTGCCTAGCAGTTCTCTAATCATCAGCGGTCAGTCATCAATTGGTCTTGCCTCCACCCTTCCTATTGAGGAGATCCAGTCCAAGTTGATCGATTTGGATCCCTGCACCACAAGTCTGAAACCCATACACCTAGCATATATACGCCATCACAAGGCAAATAAAGAAGGAACCCGTTCGACAATGACACCACCAAGGCAGCATTCCGCTGGACGGAGAAAGAGGAAGGTTGAATTGGTCAGGCTTATTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

24.19

Weight (kDa)

9.06

Isoelectric Point (pI)

57.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 67
AciI CCGC 4 cut(s) 15, 290, 441, 618
AclWI GGATC 3 cut(s) 481, 506, 519
AcuI CTGAAG 1 cut(s) 323
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 3 cut(s) 19, 565, 624
AgeI ACCGGT 1 cut(s) 220
AgsI TTSAA 2 cut(s) 158, 644
AjuI GAANNNNNNNTTGG 6 cut(s) 110, 142, 598, 629, 630, 661
AleI CACNNNNGTG 1 cut(s) 329
AluBI AGCT 2 cut(s) 275, 311
AluI AGCT 2 cut(s) 275, 311
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 3 cut(s) 481, 506, 519
AoxI GGCC 1 cut(s) 9
ApeKI GCWGC 3 cut(s) 178, 272, 610
AsiGI ACCGGT 1 cut(s) 220
Asp700I GAANNNNTTC 1 cut(s) 586
AspS9I GGNCC 1 cut(s) 10
AsuHPI GGTGA 2 cut(s) 235, 369
BaeGI GKGCMC 1 cut(s) 336
BamHI GGATCC 1 cut(s) 511
BanI GGYRCC 1 cut(s) 67
BbsI GAAGAC 1 cut(s) 396
BbvI GCAGC 3 cut(s) 165, 284, 622
BccI CCATC 4 cut(s) 361, 388, 392, 567
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 4 cut(s) 233, 420, 545, 664
BisI GCNGC 3 cut(s) 179, 273, 611
BlsI GCNGC 3 cut(s) 180, 274, 612
BmcAI AGTACT 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 10
BmiI GGNNCC 6 cut(s) 12, 69, 282, 345, 513, 583
BmsI GCATC 3 cut(s) 26, 48, 219
BpiI GAAGAC 1 cut(s) 396
BpuEI CTTGAG 1 cut(s) 170
Bsa29I ATCGAT 1 cut(s) 504
BsaBI GATNNNNATC 1 cut(s) 510
BsaJI CCNNGG 2 cut(s) 99, 605
BsaWI WCCGGW 1 cut(s) 220
BsaXI ACNNNNNCTCC 2 cut(s) 476, 506
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 565, 624
Bse118I RCCGGY 1 cut(s) 220
Bse1I ACTGG 2 cut(s) 71, 490
Bse3DI GCAATG 1 cut(s) 267
Bse8I GATNNNNATC 1 cut(s) 510
BseCI ATCGAT 1 cut(s) 504
BseDI CCNNGG 2 cut(s) 99, 605
BseGI GGATG 1 cut(s) 353
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 3 cut(s) 19, 565, 624
BseMI GCAATG 1 cut(s) 267
BseNI ACTGG 2 cut(s) 71, 490
BseRI GAGGAG 3 cut(s) 43, 251, 497
BseSI GKGCMC 1 cut(s) 336
BseXI GCAGC 3 cut(s) 165, 284, 622
BsgI GTGCAG 1 cut(s) 502
BshFI GGCC 1 cut(s) 11
BshNI GGYRCC 1 cut(s) 67
BshTI ACCGGT 1 cut(s) 220
BshVI ATCGAT 1 cut(s) 504
BsiSI CCGG 1 cut(s) 221
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 3 cut(s) 19, 565, 624
BsmAI GTCTC 1 cut(s) 172
BsmFI GGGAC 1 cut(s) 185
BsmI GAATGC 1 cut(s) 613
BsnI GGCC 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 4 cut(s) 106, 486, 501, 511
BspACI CCGC 4 cut(s) 15, 290, 441, 618
BspANI GGCC 1 cut(s) 11
BspDI ATCGAT 1 cut(s) 504
BspLI GGNNCC 6 cut(s) 12, 69, 282, 345, 513, 583
BspPI GGATC 3 cut(s) 481, 506, 519
BspT107I GGYRCC 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 267
BsrFI RCCGGY 1 cut(s) 220
BsrI ACTGG 2 cut(s) 71, 490
BssAI RCCGGY 1 cut(s) 220
BssECI CCNNGG 2 cut(s) 99, 605
BssMI GATC 4 cut(s) 106, 486, 501, 511
BssT1I CCWWGG 2 cut(s) 99, 605
Bst4CI ACNGT 1 cut(s) 328
BstAPI GCANNNNNTGC 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 371
BstF5I GGATG 1 cut(s) 353
BstKTI GATC 4 cut(s) 109, 489, 504, 514
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 4 cut(s) 106, 486, 501, 511
BstMWI GCNNNNNNNGC 4 cut(s) 67, 178, 187, 289
BstSLI GKGCMC 1 cut(s) 336
BstV1I GCAGC 3 cut(s) 165, 284, 622
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 2 cut(s) 486, 511
BstYI RGATCY 2 cut(s) 486, 511
Bsu15I ATCGAT 1 cut(s) 504
BsuRI GGCC 1 cut(s) 11
BsuTUI ATCGAT 1 cut(s) 504
BtsCI GGATG 1 cut(s) 353
BtsIMutI CAGTG 1 cut(s) 78
Cac8I GCNNGC 1 cut(s) 371
Cfr10I RCCGGY 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 10
ClaI ATCGAT 1 cut(s) 504
Csp6I GTAC 1 cut(s) 124
CspAI ACCGGT 1 cut(s) 220
CviAII CATG 1 cut(s) 191
CviJI RGCY 7 cut(s) 11, 29, 131, 275, 283, 311, 655
CviKI_1 RGCY 7 cut(s) 11, 29, 131, 275, 283, 311, 655
CviQI GTAC 1 cut(s) 124
DpnI GATC 4 cut(s) 108, 488, 503, 513
DpnII GATC 4 cut(s) 106, 486, 501, 511
Eco130I CCWWGG 2 cut(s) 99, 605
Eco57I CTGAAG 1 cut(s) 323
EcoT14I CCWWGG 2 cut(s) 99, 605
ErhI CCWWGG 2 cut(s) 99, 605
FaeI CATG 1 cut(s) 194
FaiI YATR 8 cut(s) 8, 186, 192, 315, 539, 550, 552, 554
FaqI GGGAC 1 cut(s) 185
FatI CATG 1 cut(s) 190
FauI CCCGC 1 cut(s) 22
Fnu4HI GCNGC 3 cut(s) 179, 273, 611
FokI GGATG 1 cut(s) 340
Fsp4HI GCNGC 3 cut(s) 179, 273, 611
FspBI CTAG 4 cut(s) 233, 420, 545, 664
GluI GCNGC 3 cut(s) 179, 273, 611
HaeIII GGCC 1 cut(s) 11
HapII CCGG 1 cut(s) 221
Hin1II CATG 1 cut(s) 194
HinfI GANTC 1 cut(s) 140
HpaII CCGG 1 cut(s) 221
HphI GGTGA 2 cut(s) 235, 369
Hpy188I TCNGA 1 cut(s) 531
Hpy188III TCNNGA 2 cut(s) 115, 137
HpyAV CCTTC 5 cut(s) 82, 298, 482, 572, 631
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4V TGCA 5 cut(s) 61, 181, 260, 272, 519
HpyF10VI GCNNNNNNNGC 4 cut(s) 67, 178, 187, 289
Hsp92II CATG 1 cut(s) 194
Kzo9I GATC 4 cut(s) 106, 486, 501, 511
LmnI GCTCC 2 cut(s) 259, 280
Lsp1109I GCAGC 3 cut(s) 165, 284, 622
LweI GCATC 3 cut(s) 26, 48, 219
MaeI CTAG 4 cut(s) 233, 420, 545, 664
MaeIII GTNAC 2 cut(s) 223, 247
MalI GATC 4 cut(s) 108, 488, 503, 513
MboI GATC 4 cut(s) 106, 486, 501, 511
MboII GAAGA 2 cut(s) 170, 401
MfeI CAATTG 1 cut(s) 453
MflI RGATCY 2 cut(s) 486, 511
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 2 cut(s) 453, 644
MroXI GAANNNNTTC 1 cut(s) 586
MslI CAYNNNNRTG 3 cut(s) 189, 195, 329
MspA1I CMGCKG 3 cut(s) 275, 441, 620
MspI CCGG 1 cut(s) 221
MunI CAATTG 1 cut(s) 453
Mva1269I GAATGC 1 cut(s) 613
MwoI GCNNNNNNNGC 4 cut(s) 67, 178, 187, 289
NdeII GATC 4 cut(s) 106, 486, 501, 511
NlaIII CATG 1 cut(s) 194
NlaIV GGNNCC 6 cut(s) 12, 69, 282, 345, 513, 583
NmuCI GTSAC 2 cut(s) 223, 247
OliI CACNNNNGTG 1 cut(s) 329
PctI GAATGC 1 cut(s) 613
PdmI GAANNNNTTC 1 cut(s) 586
PfeI GAWTC 1 cut(s) 140
PinAI ACCGGT 1 cut(s) 220
PkrI GCNGC 3 cut(s) 180, 274, 612
PspN4I GGNNCC 6 cut(s) 12, 69, 282, 345, 513, 583
PspPI GGNCC 1 cut(s) 10
PsuI RGATCY 2 cut(s) 486, 511
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
RseI CAYNNNNRTG 3 cut(s) 189, 195, 329
SatI GCNGC 3 cut(s) 179, 273, 611
Sau3AI GATC 4 cut(s) 106, 486, 501, 511
Sau96I GGNCC 1 cut(s) 10
ScaI AGTACT 1 cut(s) 125
SduI GDGCHC 1 cut(s) 336
SetI ASST 8 cut(s) 42, 93, 105, 156, 277, 313, 546, 642
SfaNI GCATC 3 cut(s) 26, 48, 219
SmiMI CAYNNNNRTG 3 cut(s) 189, 195, 329
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 2 cut(s) 453, 644
SsiI CCGC 4 cut(s) 15, 290, 441, 618
SspMI CTAG 4 cut(s) 233, 420, 545, 664
StyI CCWWGG 2 cut(s) 99, 605
TaaI ACNGT 1 cut(s) 328
TaqI TCGA 5 cut(s) 31, 56, 143, 504, 590
TasI AATT 2 cut(s) 453, 644
TatI WGTACW 1 cut(s) 123
TfiI GAWTC 1 cut(s) 140
TscAI CASTG 1 cut(s) 78
TseFI GTSAC 2 cut(s) 223, 247
TseI GCWGC 3 cut(s) 178, 272, 610
Tsp45I GTSAC 2 cut(s) 223, 247
TspDTI ATGAA 1 cut(s) 402
TspGWI ACGGA 1 cut(s) 640
TspRI CASTG 1 cut(s) 78
XmnI GAANNNNTTC 1 cut(s) 586
XspI CTAG 4 cut(s) 233, 420, 545, 664
ZrmI AGTACT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.