RLG00000019144

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0013683
Physical Location & Seq
Forward (+)
47296647 .. 47297144
498 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019144

Sequence Viewer

Length: 396 bp
ATGGGTGGAAATCCCATTGTTGTGGATGACGTCTTGACTGAGCTCAAAGCTGCGAGTTCTGTGCAACTGCCTGGTTTCAGGGGTGAGGTTCATGAGGCATCATTGGCTTTGGTTCCGGCTTTTGTAGTGCCTCGGACAGAGGCTGGCCATGTGAAATTTTCCTCAATGCAAATTAATGGGGCCAGTGGGGAGAAAAAGAAAGGCCGGATGTTGGTTTCACCAAAGAAGAAGAAGGTAGGGAGCAAGAATAGAGTGAAATCCACTAAGGAACGGGATGAGAAAATTATCCGTAAGTATATACGCTGGGGAAAAGCTTTGAGTTTTGGTCCAAACCTTGAAGAGTCTGTCACTGAAAAGGTTGGGCCACTGGTAGTTGTGCAGGAGGGGTTCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.21

Weight (kDa)

9.94

Isoelectric Point (pI)

22.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 33
AcoI YGGCCR 1 cut(s) 145
AcsI RAATTY 1 cut(s) 155
AcyI GRCGYC 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 211
AgsI TTSAA 1 cut(s) 338
AjnI CCWGG 1 cut(s) 70
AluBI AGCT 3 cut(s) 43, 50, 314
AluI AGCT 3 cut(s) 43, 50, 314
Alw21I GWGCWC 1 cut(s) 45
AlwNI CAGNNNCTG 1 cut(s) 143
AoxI GGCC 4 cut(s) 145, 180, 202, 362
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 155
AseI ATTAAT 1 cut(s) 174
AspS9I GGNCC 3 cut(s) 180, 326, 362
AsuHPI GGTGA 2 cut(s) 95, 210
AvaII GGWCC 1 cut(s) 326
BalI TGGCCA 1 cut(s) 147
BanII GRGCYC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 37
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BciT130I CCWGG 1 cut(s) 72
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 3 cut(s) 180, 326, 362
BmiI GGNNCC 2 cut(s) 114, 181
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 107
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 131
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse1I ACTGG 2 cut(s) 183, 372
BseBI CCWGG 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 131
BseGI GGATG 3 cut(s) 31, 213, 280
BseLI CCNNNNNNNGG 1 cut(s) 211
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 2 cut(s) 183, 372
BseXI GCAGC 1 cut(s) 37
BseYI CCCAGC 1 cut(s) 303
BshFI GGCC 4 cut(s) 147, 182, 204, 364
BsiHKAI GWGCWC 1 cut(s) 45
BsiSI CCGG 2 cut(s) 116, 205
BslI CCNNNNNNNGG 1 cut(s) 211
BsnI GGCC 4 cut(s) 147, 182, 204, 364
Bsp1286I GDGCHC 1 cut(s) 45
BspANI GGCC 4 cut(s) 147, 182, 204, 364
BspCNI CTCAG 1 cut(s) 31
BspHI TCATGA 1 cut(s) 91
BspLI GGNNCC 2 cut(s) 114, 181
BsrI ACTGG 2 cut(s) 183, 372
BssECI CCNNGG 1 cut(s) 131
BssNI GRCGYC 1 cut(s) 30
Bst2UI CCWGG 1 cut(s) 72
Bst6I CTCTTC 1 cut(s) 333
BstACI GRCGYC 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 2 cut(s) 39, 264
BstF5I GGATG 3 cut(s) 31, 213, 280
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstNI CCWGG 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 37
BstXI CCANNNNNNTGG 1 cut(s) 22
BsuRI GGCC 4 cut(s) 147, 182, 204, 364
BtsCI GGATG 3 cut(s) 31, 213, 280
BtsIMutI CAGTG 3 cut(s) 190, 348, 365
Cac8I GCNNGC 1 cut(s) 145
CaiI CAGNNNCTG 1 cut(s) 143
CciI TCATGA 1 cut(s) 91
Cfr13I GGNCC 3 cut(s) 180, 326, 362
CviAII CATG 2 cut(s) 92, 149
DdeI CTNAG 2 cut(s) 39, 264
EaeI YGGCCR 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Ecl136II GAGCTC 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 326
Eco53kI GAGCTC 1 cut(s) 43
EcoICRI GAGCTC 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 70
EcoT38I GRGCYC 1 cut(s) 45
FaeI CATG 2 cut(s) 95, 152
FaiI YATR 4 cut(s) 93, 150, 297, 299
FatI CATG 2 cut(s) 91, 148
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 3 cut(s) 38, 220, 287
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 51
GsaI CCCAGC 1 cut(s) 307
HaeIII GGCC 4 cut(s) 147, 182, 204, 364
HapII CCGG 2 cut(s) 116, 205
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 2 cut(s) 95, 152
HindIII AAGCTT 1 cut(s) 312
HinfI GANTC 1 cut(s) 341
HpaII CCGG 2 cut(s) 116, 205
HphI GGTGA 2 cut(s) 95, 210
Hpy188I TCNGA 1 cut(s) 135
Hpy188III TCNNGA 2 cut(s) 34, 92
HpyAV CCTTC 1 cut(s) 226
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 3 cut(s) 64, 169, 379
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 2 cut(s) 39, 264
HpySE526I ACGT 1 cut(s) 30
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 2 cut(s) 95, 152
LmnI GCTCC 1 cut(s) 240
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 1 cut(s) 107
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 346
MboII GAAGA 3 cut(s) 238, 241, 350
MhlI GDGCHC 1 cut(s) 45
MlsI TGGCCA 1 cut(s) 147
MluCI AATT 3 cut(s) 155, 171, 282
MluNI TGGCCA 1 cut(s) 147
MlyI GAGTC 1 cut(s) 350
MnlI CCTC 6 cut(s) 79, 88, 133, 141, 172, 376
Mox20I TGGCCA 1 cut(s) 147
MscI TGGCCA 1 cut(s) 147
MseI TTAA 1 cut(s) 174
MslI CAYNNNNRTG 1 cut(s) 20
Msp20I TGGCCA 1 cut(s) 147
MspI CCGG 2 cut(s) 116, 205
MspR9I CCNGG 1 cut(s) 72
MvaI CCWGG 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 104
NlaIII CATG 2 cut(s) 95, 152
NlaIV GGNNCC 2 cut(s) 114, 181
NmuCI GTSAC 1 cut(s) 346
PagI TCATGA 1 cut(s) 91
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
PshBI ATTAAT 1 cut(s) 174
Psp124BI GAGCTC 1 cut(s) 45
Psp6I CCWGG 1 cut(s) 70
PspFI CCCAGC 1 cut(s) 303
PspGI CCWGG 1 cut(s) 70
PspN4I GGNNCC 2 cut(s) 114, 181
PspPI GGNCC 3 cut(s) 180, 326, 362
PstNI CAGNNNCTG 1 cut(s) 143
RseI CAYNNNNRTG 1 cut(s) 20
SacI GAGCTC 1 cut(s) 45
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 1 cut(s) 51
Sau96I GGNCC 3 cut(s) 180, 326, 362
SchI GAGTC 1 cut(s) 350
ScrFI CCNGG 1 cut(s) 72
SduI GDGCHC 1 cut(s) 45
SetI ASST 8 cut(s) 33, 45, 52, 90, 237, 316, 336, 360
SfaNI GCATC 1 cut(s) 107
SinI GGWCC 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 20
Sse9I AATT 3 cut(s) 155, 171, 282
SstI GAGCTC 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 70
TaiI ACGT 1 cut(s) 33
TasI AATT 3 cut(s) 155, 171, 282
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 3 cut(s) 190, 355, 372
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 1 cut(s) 80
TspGWI ACGGA 1 cut(s) 278
TspRI CASTG 3 cut(s) 190, 355, 372
VpaK11BI GGWCC 1 cut(s) 326
VspI ATTAAT 1 cut(s) 174
XapI RAATTY 1 cut(s) 155
ZraI GACGTC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.