RLG00000009471

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0013683
Physical Location & Seq
Forward (+)
53355405 .. 53355932
528 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009471

Sequence Viewer

Length: 429 bp
ATGCAGCTGTTCGGTTTCAGGGGTGAGGGTCATGAGGCATCGTTGGCTTTGGTTCCGGCTTATGTAGTGACTCGGACAGAGGCTGGCCATGTGAAGTTTTCCTCTCTGCAAATGGGGCCAATGGGGAGGAAAAGAAAGAATGGTAGGATGTTGGTTTCACCAAAGAAGAAGAAGGCCGGGCATCCTAAGGGGAGCAAGAATAGAGTGAAATCTACTGAGGAACATGAAGAGAAAATTATACGTAAGTATAAACATCGGGGAAAAGCTTTGAGTTTTGATCAAAACCTTGAAGAGTCTGTCCCTGACAAGGTTGGTCCACAGGTGGTTGTGATGGAGGGGGTGCCTGGGACTGCTCAAGCTTTGGAGTCTACTGATGTGGTGGGCTCGGTGGCATGTGATGGCTCACATTCTGCCCATTTTGTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.45

Weight (kDa)

9.75

Isoelectric Point (pI)

30.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 340
AccI GTMKAC 1 cut(s) 368
AcoI YGGCCR 1 cut(s) 85
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 1 cut(s) 290
AjnI CCWGG 1 cut(s) 343
AluBI AGCT 3 cut(s) 7, 266, 359
AluI AGCT 3 cut(s) 7, 266, 359
AlwNI CAGNNNCTG 1 cut(s) 83
AoxI GGCC 3 cut(s) 85, 116, 174
ApeKI GCWGC 1 cut(s) 4
AspS9I GGNCC 2 cut(s) 116, 314
AsuC2I CCSGG 1 cut(s) 178
AsuHPI GGTGA 2 cut(s) 35, 150
AvaII GGWCC 1 cut(s) 314
AxyI CCTNAGG 1 cut(s) 186
BalI TGGCCA 1 cut(s) 87
BanI GGYRCC 1 cut(s) 340
BanII GRGCYC 1 cut(s) 386
BbvI GCAGC 1 cut(s) 16
BccI CCATC 2 cut(s) 325, 392
BciT130I CCWGG 1 cut(s) 345
BclI TGATCA 1 cut(s) 277
BcnI CCSGG 1 cut(s) 178
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 2 cut(s) 178, 345
Bme18I GGWCC 1 cut(s) 314
BmgT120I GGNCC 2 cut(s) 116, 314
BmiI GGNNCC 3 cut(s) 54, 117, 342
BmrFI CCNGG 2 cut(s) 178, 345
BmsI GCATC 2 cut(s) 47, 190
BpuEI CTTGAG 1 cut(s) 339
BpuMI CCSGG 1 cut(s) 178
BsaAI YACGTR 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 344
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse21I CCTNAGG 1 cut(s) 186
BseBI CCWGG 1 cut(s) 345
BseDI CCNNGG 1 cut(s) 344
BseGI GGATG 2 cut(s) 153, 181
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 207
BseXI GCAGC 1 cut(s) 16
BshFI GGCC 3 cut(s) 87, 118, 176
BshNI GGYRCC 1 cut(s) 340
BsiSI CCGG 2 cut(s) 56, 177
BslFI GGGAC 2 cut(s) 284, 361
BslI CCNNNNNNNGG 1 cut(s) 307
BsmFI GGGAC 2 cut(s) 284, 361
BsnI GGCC 3 cut(s) 87, 118, 176
Bsp1286I GDGCHC 1 cut(s) 386
Bsp143I GATC 1 cut(s) 277
BspANI GGCC 3 cut(s) 87, 118, 176
BspCNI CTCAG 1 cut(s) 208
BspHI TCATGA 1 cut(s) 31
BspLI GGNNCC 3 cut(s) 54, 117, 342
BspT107I GGYRCC 1 cut(s) 340
BssECI CCNNGG 1 cut(s) 344
BssMI GATC 1 cut(s) 277
Bst2UI CCWGG 1 cut(s) 345
Bst6I CTCTTC 2 cut(s) 222, 285
BstBAI YACGTR 1 cut(s) 242
BstC8I GCNNGC 1 cut(s) 85
BstDEI CTNAG 2 cut(s) 186, 216
BstF5I GGATG 2 cut(s) 153, 181
BstKTI GATC 1 cut(s) 280
BstMBI GATC 1 cut(s) 277
BstMWI GCNNNNNNNGC 2 cut(s) 44, 115
BstNI CCWGG 1 cut(s) 345
BstNSI RCATGY 1 cut(s) 396
BstSCI CCNGG 2 cut(s) 176, 343
BstSNI TACGTA 1 cut(s) 242
BstV1I GCAGC 1 cut(s) 16
Bsu36I CCTNAGG 1 cut(s) 186
BsuRI GGCC 3 cut(s) 87, 118, 176
BtsCI GGATG 2 cut(s) 153, 181
Cac8I GCNNGC 1 cut(s) 85
CaiI CAGNNNCTG 1 cut(s) 83
CciI TCATGA 1 cut(s) 31
Cfr13I GGNCC 2 cut(s) 116, 314
CviAII CATG 4 cut(s) 32, 89, 224, 393
DdeI CTNAG 2 cut(s) 186, 216
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
EaeI YGGCCR 1 cut(s) 85
Eam1104I CTCTTC 2 cut(s) 222, 285
EarI CTCTTC 2 cut(s) 222, 285
Eco105I TACGTA 1 cut(s) 242
Eco24I GRGCYC 1 cut(s) 386
Eco47I GGWCC 1 cut(s) 314
Eco81I CCTNAGG 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 343
EcoT38I GRGCYC 1 cut(s) 386
FaeI CATG 4 cut(s) 35, 92, 227, 396
FaiI YATR 7 cut(s) 33, 63, 90, 225, 239, 249, 394
FaqI GGGAC 2 cut(s) 284, 361
FatI CATG 4 cut(s) 31, 88, 223, 392
FbaI TGATCA 1 cut(s) 277
FblI GTMKAC 1 cut(s) 368
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 2 cut(s) 160, 168
FriOI GRGCYC 1 cut(s) 386
Fsp4HI GCNGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 5
HaeIII GGCC 3 cut(s) 87, 118, 176
HapII CCGG 2 cut(s) 56, 177
Hin1II CATG 4 cut(s) 35, 92, 227, 396
HindIII AAGCTT 2 cut(s) 264, 357
HinfI GANTC 3 cut(s) 70, 293, 365
HpaII CCGG 2 cut(s) 56, 177
HphI GGTGA 2 cut(s) 35, 150
Hpy166II GTNNAC 2 cut(s) 317, 369
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 1 cut(s) 32
Hpy8I GTNNAC 2 cut(s) 317, 369
HpyAV CCTTC 1 cut(s) 166
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 2 cut(s) 4, 109
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 115
HpyF3I CTNAG 2 cut(s) 186, 216
HpySE526I ACGT 1 cut(s) 241
Hsp92II CATG 4 cut(s) 35, 92, 227, 396
Ksp22I TGATCA 1 cut(s) 277
Kzo9I GATC 1 cut(s) 277
LmnI GCTCC 1 cut(s) 192
LpnPI CCDG 8 cut(s) 4, 69, 69, 190, 305, 315, 330, 357
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 2 cut(s) 47, 190
MaeII ACGT 1 cut(s) 241
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 4 cut(s) 178, 181, 239, 302
MhlI GDGCHC 1 cut(s) 386
MlsI TGGCCA 1 cut(s) 87
MluCI AATT 1 cut(s) 234
MluNI TGGCCA 1 cut(s) 87
MlyI GAGTC 3 cut(s) 64, 302, 374
MnlI CCTC 7 cut(s) 19, 28, 73, 112, 120, 211, 328
Mox20I TGGCCA 1 cut(s) 87
MscI TGGCCA 1 cut(s) 87
MseI TTAA 1 cut(s) 427
Msp20I TGGCCA 1 cut(s) 87
MspA1I CMGCKG 1 cut(s) 7
MspI CCGG 2 cut(s) 56, 177
MspR9I CCNGG 2 cut(s) 178, 345
MvaI CCWGG 1 cut(s) 345
MwoI GCNNNNNNNGC 2 cut(s) 44, 115
NciI CCSGG 1 cut(s) 178
NdeII GATC 1 cut(s) 277
NlaIII CATG 4 cut(s) 35, 92, 227, 396
NlaIV GGNNCC 3 cut(s) 54, 117, 342
NmuCI GTSAC 1 cut(s) 67
NspI RCATGY 1 cut(s) 396
PagI TCATGA 1 cut(s) 31
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 3 cut(s) 64, 301, 373
PpsI GAGTC 3 cut(s) 64, 301, 373
Ppu21I YACGTR 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 343
PspGI CCWGG 1 cut(s) 343
PspN4I GGNNCC 3 cut(s) 54, 117, 342
PspPI GGNCC 2 cut(s) 116, 314
PstNI CAGNNNCTG 1 cut(s) 83
PvuII CAGCTG 1 cut(s) 7
SaqAI TTAA 1 cut(s) 427
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 1 cut(s) 277
Sau96I GGNCC 2 cut(s) 116, 314
SchI GAGTC 3 cut(s) 64, 302, 374
ScrFI CCNGG 2 cut(s) 178, 345
SduI GDGCHC 1 cut(s) 386
SetI ASST 7 cut(s) 9, 244, 268, 288, 312, 324, 361
SfaNI GCATC 2 cut(s) 47, 190
SinI GGWCC 1 cut(s) 314
SmlI CTYRAG 1 cut(s) 354
SmoI CTYRAG 1 cut(s) 354
SnaBI TACGTA 1 cut(s) 242
Sse9I AATT 1 cut(s) 234
StyD4I CCNGG 2 cut(s) 176, 343
TaiI ACGT 1 cut(s) 244
TasI AATT 1 cut(s) 234
Tru1I TTAA 1 cut(s) 427
Tru9I TTAA 1 cut(s) 427
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 240
VpaK11BI GGWCC 1 cut(s) 314
XceI RCATGY 1 cut(s) 396
XmiI GTMKAC 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.