FvH4_5g31131

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013683
Physical Location & Seq
Forward (+)
22068287 .. 22069201
915 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g31131.t1

Sequence Viewer

Length: 750 bp
ATGGCGTCTTGTTCTGGTTGTGGGTCTAGTGGGGAGTTGATGAGCAGGAAGAGAAAGAGGACTTGTGTAGAAGATGAGGAGGCGAATGCTAGAAGGACAAACTGTTTCGAACTTGTCATTGATCTGCAGGAGTTGTTCTCTGTTGATGACTTGTTATGTGGTGACCATGATGATTATCAAGTTTGTGAGGAACAAGGTAGTAGTCACTTTGACAGTTGTACTGCTGATTCTTTTGTAATTGTTTCTCAAAATGAGAGTGAAGAGGATGATACCTGTTGGCTTGTTGATGCATCGGAGGAAGAAGACCCTTCAAATTCCGTCTCTGAAAACCAAATTTATGTTGGTGATGATATGATATCCACTGTAATTGAGTCGACTGATATACAGTTGGAGGAAGAGGGCACTGGTCAAAATGACATCATTCCTATGGATGGTGCATCCTACTTTCAGTCTGATGAGTGTAGCAACTTGTTCTTCCACTTTGAAAATCAGTACAATTGTACTGCTGATTCTTGTGTAATTGTTTCTCAAAATGAGAATGAAGATGCACAGTTAGAGGATGATAGCTGTTGGCTTGTTGATGCATCCCTCTCTGCTGCAAATGAGTCGACTGATATACAGTTGGATGAGGGCACTGATCAAAATGGCTCTGCCCCTGCCTTCTTAGAACAACATCAAGATGATGATGACATCATTCCTATGGATAGTGCATCCTACTTCCAGTCTGATGAGTTTCAACTGCTGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

250

Amino Acids

27.65

Weight (kDa)

4.05

Isoelectric Point (pI)

56.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 374, 608
AcsI RAATTY 2 cut(s) 313, 333
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 220, 494, 502
AfiI CCNNNNNNNGG 1 cut(s) 431
AgsI TTSAA 3 cut(s) 312, 485, 737
AluBI AGCT 1 cut(s) 567
AluI AGCT 1 cut(s) 567
Alw26I GTCTC 1 cut(s) 325
ApeKI GCWGC 1 cut(s) 596
ApoI RAATTY 2 cut(s) 313, 333
AsuHPI GGTGA 2 cut(s) 173, 356
AsuII TTCGAA 1 cut(s) 108
BaeGI GKGCMC 2 cut(s) 404, 635
BbsI GAAGAC 1 cut(s) 309
BbvI GCAGC 1 cut(s) 583
BccI CCATC 1 cut(s) 425
BcgI CGANNNNNNTGC 2 cut(s) 588, 622
BclI TGATCA 1 cut(s) 637
BcoDI GTCTC 1 cut(s) 325
BfaI CTAG 2 cut(s) 27, 90
BfmI CTRYAG 1 cut(s) 125
BisI GCNGC 1 cut(s) 597
BlsI GCNGC 1 cut(s) 598
BmsI GCATC 7 cut(s) 277, 299, 446, 535, 571, 593, 719
BpiI GAAGAC 1 cut(s) 309
BplI GAGNNNNNCTC 2 cut(s) 122, 154
Bpu14I TTCGAA 1 cut(s) 108
BsaBI GATNNNNATC 1 cut(s) 174
BsaHI GRCGYC 1 cut(s) 5
Bsc4I CCNNNNNNNGG 1 cut(s) 431
Bse1I ACTGG 2 cut(s) 409, 721
Bse8I GATNNNNATC 1 cut(s) 174
BseGI GGATG 7 cut(s) 271, 436, 437, 565, 584, 631, 710
BseJI GATNNNNATC 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 431
BseMII CTCAG 1 cut(s) 734
BseNI ACTGG 2 cut(s) 409, 721
BseRI GAGGAG 1 cut(s) 92
BseSI GKGCMC 2 cut(s) 404, 635
BseXI GCAGC 1 cut(s) 583
BslI CCNNNNNNNGG 1 cut(s) 431
BsmAI GTCTC 1 cut(s) 325
BsmBI CGTCTC 1 cut(s) 325
BsmI GAATGC 1 cut(s) 91
Bsp119I TTCGAA 1 cut(s) 108
Bsp1286I GDGCHC 2 cut(s) 404, 635
Bsp143I GATC 2 cut(s) 121, 637
BspCNI CTCAG 1 cut(s) 735
BspMAI CTGCAG 1 cut(s) 129
BspT104I TTCGAA 1 cut(s) 108
BsrI ACTGG 2 cut(s) 409, 721
BssMI GATC 2 cut(s) 121, 637
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 6 cut(s) 104, 215, 364, 387, 552, 621
Bst6I CTCTTC 3 cut(s) 44, 255, 390
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 108
BstDEI CTNAG 2 cut(s) 664, 743
BstEII GGTNACC 1 cut(s) 161
BstF5I GGATG 7 cut(s) 271, 436, 437, 565, 584, 631, 710
BstKTI GATC 2 cut(s) 124, 640
BstMAI GTCTC 1 cut(s) 325
BstMBI GATC 2 cut(s) 121, 637
BstPI GGTNACC 1 cut(s) 161
BstSFI CTRYAG 1 cut(s) 125
BstSLI GKGCMC 2 cut(s) 404, 635
BstV1I GCAGC 1 cut(s) 583
BstV2I GAAGAC 1 cut(s) 309
BtsCI GGATG 7 cut(s) 271, 436, 437, 565, 584, 631, 710
BtsIMutI CAGTG 3 cut(s) 360, 402, 633
Csp6I GTAC 3 cut(s) 219, 493, 501
CspCI CAANNNNNGTGG 2 cut(s) 349, 384
CviAII CATG 1 cut(s) 167
CviJI RGCY 4 cut(s) 280, 567, 574, 648
CviKI_1 RGCY 4 cut(s) 280, 567, 574, 648
CviQI GTAC 3 cut(s) 219, 493, 501
DdeI CTNAG 2 cut(s) 664, 743
DpnI GATC 2 cut(s) 123, 639
DpnII GATC 2 cut(s) 121, 637
Eam1104I CTCTTC 3 cut(s) 44, 255, 390
EarI CTCTTC 3 cut(s) 44, 255, 390
Eco32I GATATC 1 cut(s) 357
Eco91I GGTNACC 1 cut(s) 161
EcoO65I GGTNACC 1 cut(s) 161
EcoRV GATATC 1 cut(s) 357
EcoT22I ATGCAT 2 cut(s) 292, 586
Esp3I CGTCTC 1 cut(s) 325
FaeI CATG 1 cut(s) 170
FaiI YATR 8 cut(s) 157, 168, 339, 353, 383, 428, 617, 701
FatI CATG 1 cut(s) 166
FbaI TGATCA 1 cut(s) 637
FblI GTMKAC 2 cut(s) 374, 608
Fnu4HI GCNGC 1 cut(s) 597
FokI GGATG 7 cut(s) 278, 424, 443, 571, 572, 638, 697
Fsp4HI GCNGC 1 cut(s) 597
FspBI CTAG 2 cut(s) 27, 90
GluI GCNGC 1 cut(s) 597
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 170
HincII GTYRAC 2 cut(s) 375, 609
HindII GTYRAC 2 cut(s) 375, 609
HinfI GANTC 4 cut(s) 227, 371, 509, 605
HphI GGTGA 2 cut(s) 173, 356
Hpy166II GTNNAC 2 cut(s) 375, 609
Hpy188I TCNGA 4 cut(s) 295, 325, 454, 727
Hpy188III TCNNGA 1 cut(s) 677
Hpy8I GTNNAC 2 cut(s) 375, 609
HpyAV CCTTC 3 cut(s) 87, 318, 670
HpyCH4III ACNGT 6 cut(s) 104, 215, 364, 387, 552, 621
HpyCH4V TGCA 7 cut(s) 127, 290, 437, 548, 584, 599, 710
HpyF3I CTNAG 2 cut(s) 664, 743
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 170
Ksp22I TGATCA 1 cut(s) 637
Kzo9I GATC 2 cut(s) 121, 637
LpnPI CCDG 6 cut(s) 31, 113, 286, 390, 669, 734
Lsp1109I GCAGC 1 cut(s) 583
LweI GCATC 7 cut(s) 277, 299, 446, 535, 571, 593, 719
MaeI CTAG 2 cut(s) 27, 90
MaeIII GTNAC 2 cut(s) 161, 203
MalI GATC 2 cut(s) 123, 639
MboI GATC 2 cut(s) 121, 637
MboII GAAGA 8 cut(s) 61, 83, 272, 311, 314, 407, 466, 554
MfeI CAATTG 1 cut(s) 496
MhlI GDGCHC 2 cut(s) 404, 635
MluCI AATT 6 cut(s) 237, 313, 333, 366, 496, 519
MlyI GAGTC 2 cut(s) 380, 614
MmeI TCCRAC 2 cut(s) 369, 603
Mph1103I ATGCAT 2 cut(s) 292, 586
MseI TTAA 1 cut(s) 748
MslI CAYNNNNRTG 3 cut(s) 425, 678, 698
MunI CAATTG 1 cut(s) 496
Mva1269I GAATGC 1 cut(s) 91
NdeII GATC 2 cut(s) 121, 637
NlaIII CATG 1 cut(s) 170
NmuCI GTSAC 2 cut(s) 161, 203
NsiI ATGCAT 2 cut(s) 292, 586
NspV TTCGAA 1 cut(s) 108
PctI GAATGC 1 cut(s) 91
PfeI GAWTC 2 cut(s) 227, 509
PkrI GCNGC 1 cut(s) 598
PleI GAGTC 2 cut(s) 379, 613
PpsI GAGTC 2 cut(s) 379, 613
PspEI GGTNACC 1 cut(s) 161
PstI CTGCAG 1 cut(s) 129
RsaI GTAC 3 cut(s) 220, 494, 502
RsaNI GTAC 3 cut(s) 219, 493, 501
RseI CAYNNNNRTG 3 cut(s) 425, 678, 698
SalI GTCGAC 2 cut(s) 373, 607
SaqAI TTAA 1 cut(s) 748
SatI GCNGC 1 cut(s) 597
Sau3AI GATC 2 cut(s) 121, 637
SchI GAGTC 2 cut(s) 380, 614
SduI GDGCHC 2 cut(s) 404, 635
SetI ASST 3 cut(s) 199, 275, 569
SfaNI GCATC 7 cut(s) 277, 299, 446, 535, 571, 593, 719
SfcI CTRYAG 1 cut(s) 125
SfuI TTCGAA 1 cut(s) 108
SmiMI CAYNNNNRTG 3 cut(s) 425, 678, 698
Sse9I AATT 6 cut(s) 237, 313, 333, 366, 496, 519
SspMI CTAG 2 cut(s) 27, 90
TaaI ACNGT 6 cut(s) 104, 215, 364, 387, 552, 621
TaqI TCGA 3 cut(s) 108, 374, 608
TasI AATT 6 cut(s) 237, 313, 333, 366, 496, 519
TatI WGTACW 3 cut(s) 218, 492, 500
TfiI GAWTC 2 cut(s) 227, 509
Tru1I TTAA 1 cut(s) 748
Tru9I TTAA 1 cut(s) 748
TscAI CASTG 3 cut(s) 367, 409, 640
TseFI GTSAC 2 cut(s) 161, 203
TseI GCWGC 1 cut(s) 596
Tsp45I GTSAC 2 cut(s) 161, 203
TspDTI ATGAA 1 cut(s) 555
TspGWI ACGGA 1 cut(s) 307
TspRI CASTG 3 cut(s) 367, 409, 640
XapI RAATTY 2 cut(s) 313, 333
XcmI CCANNNNNNNNNTGG 1 cut(s) 338
XmiI GTMKAC 2 cut(s) 374, 608
XspI CTAG 2 cut(s) 27, 90
Zsp2I ATGCAT 2 cut(s) 292, 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.