RLG00000035716

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013683
Physical Location & Seq
Reverse (-)
70768470 .. 70769053
584 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035716

Sequence Viewer

Length: 375 bp
ATGGGAACTCCCATTGTTTTGGACCAAGTCCTAACTGACATCAAAGCTGCGGGCTGGGTGCAGCTTCCAATGTTCCAGGGAGAGGCTAGTTTAGCATCATTGGCTTTGGTTCCAGCTTCTACTATGACTATGAAAGAGGTTGCTCGGGTGGAGTTTTCCTCCTTGCAAGTGGATGAGAAGACAACTCGCAAGTATAAGCGTCGGGGAAAAGCTTTGAGTTTTGAATCAAATCTTGAAGATCCTGATCTTGACAGGGTTGGCAAGCATGCTCTTGTGCTAGAGGGGGTGAGTGAGACTACTTATTTGATGGAGTCTACTACTGCAGAGGGGTCAGTGGAATATGATGAGTCACATTCTACCAATAGTCTAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.58

Weight (kDa)

4.76

Isoelectric Point (pI)

24.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 314
AciI CCGC 1 cut(s) 50
AclWI GGATC 1 cut(s) 233
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 2 cut(s) 224, 236
AjnI CCWGG 1 cut(s) 75
AluBI AGCT 4 cut(s) 47, 64, 116, 212
AluI AGCT 4 cut(s) 47, 64, 116, 212
Alw26I GTCTC 1 cut(s) 287
AlwI GGATC 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 144
ApeKI GCWGC 2 cut(s) 47, 61
ArsI GACNNNNNNTTYG 2 cut(s) 286, 318
AspS9I GGNCC 1 cut(s) 22
AsuHPI GGTGA 1 cut(s) 298
AvaI CYCGRG 1 cut(s) 144
AvaII GGWCC 1 cut(s) 22
BbsI GAAGAC 1 cut(s) 185
BbvI GCAGC 2 cut(s) 34, 73
BccI CCATC 1 cut(s) 301
BciT130I CCWGG 1 cut(s) 77
BcoDI GTCTC 1 cut(s) 287
BfaI CTAG 3 cut(s) 87, 278, 368
BfmI CTRYAG 1 cut(s) 321
BisI GCNGC 2 cut(s) 48, 62
BlsI GCNGC 2 cut(s) 49, 63
Bme1390I CCNGG 1 cut(s) 77
Bme18I GGWCC 1 cut(s) 22
BmeT110I CYCGRG 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 22
BmiI GGNNCC 1 cut(s) 111
BmrFI CCNGG 1 cut(s) 77
BmsI GCATC 1 cut(s) 104
BpiI GAAGAC 1 cut(s) 185
BplI GAGNNNNNCTC 2 cut(s) 143, 175
BsaBI GATNNNNATC 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse8I GATNNNNATC 1 cut(s) 243
BseBI CCWGG 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 76
BseGI GGATG 1 cut(s) 178
BseJI GATNNNNATC 1 cut(s) 243
BseLI CCNNNNNNNGG 1 cut(s) 82
BseXI GCAGC 2 cut(s) 34, 73
BseYI CCCAGC 1 cut(s) 54
BsgI GTGCAG 1 cut(s) 80
BsiHKCI CYCGRG 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 82
BsmAI GTCTC 1 cut(s) 287
BsoBI CYCGRG 1 cut(s) 144
Bsp143I GATC 2 cut(s) 238, 244
BspACI CCGC 1 cut(s) 50
BspLI GGNNCC 1 cut(s) 111
BspMAI CTGCAG 1 cut(s) 325
BspPI GGATC 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 2 cut(s) 238, 244
Bst2UI CCWGG 1 cut(s) 77
BstC8I GCNNGC 3 cut(s) 52, 263, 267
BstF5I GGATG 1 cut(s) 178
BstKTI GATC 2 cut(s) 241, 247
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 2 cut(s) 238, 244
BstMWI GCNNNNNNNGC 2 cut(s) 92, 101
BstNI CCWGG 1 cut(s) 77
BstNSI RCATGY 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 75
BstSFI CTRYAG 1 cut(s) 321
BstV1I GCAGC 2 cut(s) 34, 73
BstV2I GAAGAC 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 238
BstXI CCANNNNNNTGG 1 cut(s) 19
BstYI RGATCY 1 cut(s) 238
BtsCI GGATG 1 cut(s) 178
BtsIMutI CAGTG 1 cut(s) 339
Cac8I GCNNGC 3 cut(s) 52, 263, 267
Cfr13I GGNCC 1 cut(s) 22
CseI GACGC 1 cut(s) 188
CviAII CATG 1 cut(s) 266
CviJI RGCY 7 cut(s) 47, 54, 64, 86, 104, 116, 212
CviKI_1 RGCY 7 cut(s) 47, 54, 64, 86, 104, 116, 212
DpnI GATC 2 cut(s) 240, 246
DpnII GATC 2 cut(s) 238, 244
Eco47I GGWCC 1 cut(s) 22
Eco88I CYCGRG 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 75
FaeI CATG 1 cut(s) 269
FaiI YATR 5 cut(s) 125, 131, 195, 267, 342
FatI CATG 1 cut(s) 265
FauI CCCGC 1 cut(s) 43
FblI GTMKAC 1 cut(s) 314
Fnu4HI GCNGC 2 cut(s) 48, 62
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 2 cut(s) 48, 62
FspBI CTAG 3 cut(s) 87, 278, 368
GluI GCNGC 2 cut(s) 48, 62
GsaI CCCAGC 1 cut(s) 58
HgaI GACGC 1 cut(s) 188
Hin1II CATG 1 cut(s) 269
HindIII AAGCTT 1 cut(s) 210
HinfI GANTC 3 cut(s) 224, 311, 347
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 1 cut(s) 315
Hpy188III TCNNGA 3 cut(s) 233, 242, 248
Hpy8I GTNNAC 1 cut(s) 315
Hpy99I CGWCG 1 cut(s) 204
HpyCH4V TGCA 3 cut(s) 61, 166, 323
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 101
Hsp92II CATG 1 cut(s) 269
Kzo9I GATC 2 cut(s) 238, 244
LpnPI CCDG 6 cut(s) 40, 62, 89, 126, 238, 255
Lsp1109I GCAGC 2 cut(s) 34, 73
LweI GCATC 1 cut(s) 104
MaeI CTAG 3 cut(s) 87, 278, 368
MaeIII GTNAC 1 cut(s) 348
MalI GATC 2 cut(s) 240, 246
MboI GATC 2 cut(s) 238, 244
MboII GAAGA 2 cut(s) 190, 248
MflI RGATCY 1 cut(s) 238
MlyI GAGTC 2 cut(s) 320, 356
MnlI CCTC 5 cut(s) 76, 130, 169, 274, 319
MseI TTAA 1 cut(s) 373
MspR9I CCNGG 1 cut(s) 77
MvaI CCWGG 1 cut(s) 77
MwoI GCNNNNNNNGC 2 cut(s) 92, 101
NdeII GATC 2 cut(s) 238, 244
NlaIII CATG 1 cut(s) 269
NlaIV GGNNCC 1 cut(s) 111
NmuCI GTSAC 1 cut(s) 348
NspI RCATGY 1 cut(s) 269
PaeI GCATGC 1 cut(s) 269
PfeI GAWTC 1 cut(s) 224
PflFI GACNNNGTC 1 cut(s) 26
PkrI GCNGC 2 cut(s) 49, 63
PleI GAGTC 2 cut(s) 319, 355
PpsI GAGTC 2 cut(s) 319, 355
Psp6I CCWGG 1 cut(s) 75
PspFI CCCAGC 1 cut(s) 54
PspGI CCWGG 1 cut(s) 75
PspN4I GGNNCC 1 cut(s) 111
PspPI GGNCC 1 cut(s) 22
PstI CTGCAG 1 cut(s) 325
PsuI RGATCY 1 cut(s) 238
PsyI GACNNNGTC 1 cut(s) 26
SaqAI TTAA 1 cut(s) 373
SatI GCNGC 2 cut(s) 48, 62
Sau3AI GATC 2 cut(s) 238, 244
Sau96I GGNCC 1 cut(s) 22
SchI GAGTC 2 cut(s) 320, 356
ScrFI CCNGG 1 cut(s) 77
SetI ASST 5 cut(s) 49, 66, 118, 141, 214
SfaNI GCATC 1 cut(s) 104
SfcI CTRYAG 1 cut(s) 321
SinI GGWCC 1 cut(s) 22
SphI GCATGC 1 cut(s) 269
SsiI CCGC 1 cut(s) 50
SspMI CTAG 3 cut(s) 87, 278, 368
StyD4I CCNGG 1 cut(s) 75
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 1 cut(s) 373
Tru9I TTAA 1 cut(s) 373
TscAI CASTG 1 cut(s) 339
TseFI GTSAC 1 cut(s) 348
TseI GCWGC 2 cut(s) 47, 61
Tsp45I GTSAC 1 cut(s) 348
TspDTI ATGAA 1 cut(s) 146
TspRI CASTG 1 cut(s) 339
Tth111I GACNNNGTC 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 22
XceI RCATGY 1 cut(s) 269
XmiI GTMKAC 1 cut(s) 314
XspI CTAG 3 cut(s) 87, 278, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.