RLG00000009472

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0013683
Physical Location & Seq
Forward (+)
53359410 .. 53364144
4735 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009472

Sequence Viewer

Length: 954 bp
ATGAAAAGGAACGAAAGCAATAAGAAAAGGAAGAGGAAGTTTGTTGAGGATGGGGAGGAGAATGCTAGAAGGACAAAGTCTTTCAAACTAGAACAGCAACTACCCTCTCGTTCTCATCATGAGCAGCAACAGCAAGTTGATGAGGAATGGATCAATGTTGATGACTTGTTCTGTGGTGACAATGTTGATGAGGAACAAGGTAGTGGTGGTGCCCAGCAGCAGCAGATTCCTTCTCCTCATTTTGACAACAATTACAATTGTACTACTGATGATGTAATTGTATCTGTAAATGAAAGTGAAGATGCAGAGTTAGATGATACTAGTTGGCTTGATGTTGCATTGGAGGAAGTAGACCCTAACCCCTCAGAACAACACAGTTCTGCTGGTCATGATCTAATAATGGCTGTAAATGAGTCGACTTATTTACAGTTTGAGGAGGGCGCTGATCAGAATGGCTCTGCATCGGAGGGAGTAGGAGGGGAGACACTACCCCCTGCCCTCTCAGAAAAACATACATCTTCATCACCATTGACGTTGCAGCAGCAGCACCTGTTCTCTCAAGATGATGATCAAACATTTGATTTTGCTTGTGATAGTGATATCATTCCTATGGATGGTGCCGCTTACTTTCAGTCTGATGAATTTAGCAACTTTTACTTCCACTTCGAAAATCACTACTTATCTGGAGAAGCTACACTACCACAAGACCTTCTCCTCCGATTTGAGCCCGGCGTGCACCAGCGCTTCAACCCCCAACTTCCCACCGAAAATCTCGTTGACGGCGACGACAGCGGCGGTCGCGTTGGATCTGAGCCCGCTTCTCAAAGGCAGGCCTTTCTAGAGAGAGAGGGAGAGGCCGACGGAGCGGACGCCGAGCATCTTCATGACCTCAATGGCTGCGATCCCAGCACCATTCTAGATCGGTCACCGGACGCCGAGCATCTTCTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

318

Amino Acids

35.4

Weight (kDa)

4.23

Isoelectric Point (pI)

59.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 209, 617
AccBSI CCGCTC 1 cut(s) 866
AccI GTMKAC 2 cut(s) 351, 416
AccII CGCG 1 cut(s) 801
AciI CCGC 5 cut(s) 621, 792, 795, 816, 866
AclWI GGATC 3 cut(s) 158, 814, 896
AcsI RAATTY 1 cut(s) 641
AcyI GRCGYC 2 cut(s) 870, 933
AfaI GTAC 1 cut(s) 262
AfeI AGCGCT 1 cut(s) 743
AfiI CCNNNNNNNGG 1 cut(s) 614
AgsI TTSAA 2 cut(s) 85, 748
AhlI ACTAGT 1 cut(s) 320
AluBI AGCT 1 cut(s) 692
AluI AGCT 1 cut(s) 692
Alw21I GWGCWC 1 cut(s) 738
Alw26I GTCTC 1 cut(s) 476
Alw44I GTGCAC 1 cut(s) 734
AlwI GGATC 3 cut(s) 158, 814, 896
AlwNI CAGNNNCTG 1 cut(s) 550
Aor51HI AGCGCT 1 cut(s) 743
AoxI GGCC 2 cut(s) 831, 855
ApaLI GTGCAC 1 cut(s) 734
ApeKI GCWGC 7 cut(s) 124, 217, 220, 538, 541, 544, 897
ApoI RAATTY 1 cut(s) 641
AspLEI GCGC 2 cut(s) 443, 744
AsuC2I CCSGG 1 cut(s) 729
AsuHPI GGTGA 3 cut(s) 188, 516, 918
AsuII TTCGAA 1 cut(s) 666
BaeGI GKGCMC 2 cut(s) 214, 738
BanI GGYRCC 2 cut(s) 209, 617
BanII GRGCYC 2 cut(s) 729, 816
BarI GAAGNNNNNNTAC 2 cut(s) 681, 713
Bbv12I GWGCWC 1 cut(s) 738
BbvI GCAGC 7 cut(s) 136, 229, 232, 550, 553, 556, 884
BccI CCATC 2 cut(s) 44, 608
BceAI ACGGC 1 cut(s) 796
BclI TGATCA 2 cut(s) 445, 568
BcnI CCSGG 1 cut(s) 729
BcoDI GTCTC 1 cut(s) 476
BcuI ACTAGT 1 cut(s) 320
BfaI CTAG 5 cut(s) 66, 89, 321, 839, 917
BfoI RGCGCY 2 cut(s) 444, 745
BisI GCNGC 9 cut(s) 125, 218, 221, 539, 542, 545, 621, 793, 898
BlsI GCNGC 9 cut(s) 126, 219, 222, 540, 543, 546, 622, 794, 899
Bme1390I CCNGG 1 cut(s) 729
BmiI GGNNCC 2 cut(s) 211, 619
BmrFI CCNGG 1 cut(s) 729
BmsI GCATC 4 cut(s) 292, 470, 886, 949
BpmI CTGGAG 1 cut(s) 705
Bpu14I TTCGAA 1 cut(s) 666
BpuEI CTTGAG 1 cut(s) 543
BpuMI CCSGG 1 cut(s) 729
BsaBI GATNNNNATC 1 cut(s) 567
BsaHI GRCGYC 2 cut(s) 870, 933
BsaWI WCCGGW 1 cut(s) 928
Bsc4I CCNNNNNNNGG 1 cut(s) 614
Bse8I GATNNNNATC 1 cut(s) 567
BseGI GGATG 2 cut(s) 55, 619
BseJI GATNNNNATC 1 cut(s) 567
BseLI CCNNNNNNNGG 1 cut(s) 614
BseMII CTCAG 3 cut(s) 378, 516, 801
BseRI GAGGAG 4 cut(s) 71, 225, 449, 704
BseSI GKGCMC 2 cut(s) 214, 738
BseXI GCAGC 7 cut(s) 136, 229, 232, 550, 553, 556, 884
BseYI CCCAGC 2 cut(s) 213, 905
Bsh1236I CGCG 1 cut(s) 801
Bsh1285I CGRYCG 1 cut(s) 799
BshFI GGCC 2 cut(s) 833, 857
BshNI GGYRCC 2 cut(s) 209, 617
BsiEI CGRYCG 1 cut(s) 799
BsiHKAI GWGCWC 1 cut(s) 738
BsiSI CCGG 2 cut(s) 729, 929
BslI CCNNNNNNNGG 1 cut(s) 614
BsmAI GTCTC 1 cut(s) 476
BsmI GAATGC 1 cut(s) 67
BsnI GGCC 2 cut(s) 833, 857
Bsp119I TTCGAA 1 cut(s) 666
Bsp1286I GDGCHC 4 cut(s) 214, 729, 738, 816
Bsp143I GATC 7 cut(s) 150, 391, 445, 568, 806, 901, 919
BspACI CCGC 5 cut(s) 621, 792, 795, 816, 866
BspANI GGCC 2 cut(s) 833, 857
BspCNI CTCAG 3 cut(s) 377, 515, 802
BspFNI CGCG 1 cut(s) 801
BspHI TCATGA 3 cut(s) 118, 388, 883
BspLI GGNNCC 2 cut(s) 211, 619
BspPI GGATC 3 cut(s) 158, 814, 896
BspT104I TTCGAA 1 cut(s) 666
BspT107I GGYRCC 2 cut(s) 209, 617
BsrBI CCGCTC 1 cut(s) 866
BssMI GATC 7 cut(s) 150, 391, 445, 568, 806, 901, 919
BssNI GRCGYC 2 cut(s) 870, 933
Bst4CI ACNGT 2 cut(s) 377, 429
Bst6I CTCTTC 1 cut(s) 26
BstACI GRCGYC 2 cut(s) 870, 933
BstBI TTCGAA 1 cut(s) 666
BstC8I GCNNGC 3 cut(s) 734, 816, 831
BstDEI CTNAG 4 cut(s) 364, 502, 810, 951
BstEII GGTNACC 1 cut(s) 924
BstF5I GGATG 2 cut(s) 55, 619
BstFNI CGCG 1 cut(s) 801
BstH2I RGCGCY 2 cut(s) 444, 745
BstHHI GCGC 2 cut(s) 443, 744
BstKTI GATC 7 cut(s) 153, 394, 448, 571, 809, 904, 922
BstMAI GTCTC 1 cut(s) 476
BstMBI GATC 7 cut(s) 150, 391, 445, 568, 806, 901, 919
BstMCI CGRYCG 1 cut(s) 799
BstMWI GCNNNNNNNGC 7 cut(s) 130, 544, 733, 789, 798, 863, 906
BstPI GGTNACC 1 cut(s) 924
BstSCI CCNGG 1 cut(s) 727
BstSLI GKGCMC 2 cut(s) 214, 738
BstUI CGCG 1 cut(s) 801
BstV1I GCAGC 7 cut(s) 136, 229, 232, 550, 553, 556, 884
BstX2I RGATCY 1 cut(s) 806
BstYI RGATCY 1 cut(s) 806
BsuRI GGCC 2 cut(s) 833, 857
BtsCI GGATG 2 cut(s) 55, 619
Cac8I GCNNGC 3 cut(s) 734, 816, 831
CaiI CAGNNNCTG 1 cut(s) 550
CciI TCATGA 3 cut(s) 118, 388, 883
CfoI GCGC 2 cut(s) 443, 744
CseI GACGC 2 cut(s) 878, 941
Csp6I GTAC 1 cut(s) 261
CviAII CATG 3 cut(s) 119, 389, 884
CviJI RGCY 9 cut(s) 328, 404, 456, 692, 727, 814, 833, 857, 897
CviKI_1 RGCY 9 cut(s) 328, 404, 456, 692, 727, 814, 833, 857, 897
CviQI GTAC 1 cut(s) 261
DdeI CTNAG 4 cut(s) 364, 502, 810, 951
DpnI GATC 7 cut(s) 152, 393, 447, 570, 808, 903, 921
DpnII GATC 7 cut(s) 150, 391, 445, 568, 806, 901, 919
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
Eco147I AGGCCT 1 cut(s) 833
Eco24I GRGCYC 2 cut(s) 729, 816
Eco32I GATATC 1 cut(s) 601
Eco47III AGCGCT 1 cut(s) 743
Eco91I GGTNACC 1 cut(s) 924
EcoO65I GGTNACC 1 cut(s) 924
EcoRV GATATC 1 cut(s) 601
EcoT38I GRGCYC 2 cut(s) 729, 816
FaeI CATG 3 cut(s) 122, 392, 887
FaiI YATR 5 cut(s) 120, 390, 513, 611, 885
FatI CATG 3 cut(s) 118, 388, 883
FauI CCCGC 1 cut(s) 823
FbaI TGATCA 2 cut(s) 445, 568
FblI GTMKAC 2 cut(s) 351, 416
Fnu4HI GCNGC 9 cut(s) 125, 218, 221, 539, 542, 545, 621, 793, 898
FokI GGATG 2 cut(s) 62, 626
FriOI GRGCYC 2 cut(s) 729, 816
Fsp4HI GCNGC 9 cut(s) 125, 218, 221, 539, 542, 545, 621, 793, 898
FspBI CTAG 5 cut(s) 66, 89, 321, 839, 917
GlaI GCGC 2 cut(s) 442, 743
GluI GCNGC 9 cut(s) 125, 218, 221, 539, 542, 545, 621, 793, 898
GsaI CCCAGC 2 cut(s) 217, 909
GsuI CTGGAG 1 cut(s) 705
HaeII RGCGCY 2 cut(s) 444, 745
HaeIII GGCC 2 cut(s) 833, 857
HapII CCGG 2 cut(s) 729, 929
HgaI GACGC 2 cut(s) 878, 941
HhaI GCGC 2 cut(s) 443, 744
Hin1I GRCGYC 2 cut(s) 870, 933
Hin1II CATG 3 cut(s) 122, 392, 887
Hin6I GCGC 2 cut(s) 441, 742
HinP1I GCGC 2 cut(s) 441, 742
HincII GTYRAC 2 cut(s) 417, 778
HindII GTYRAC 2 cut(s) 417, 778
HinfI GANTC 2 cut(s) 226, 413
HpaII CCGG 2 cut(s) 729, 929
HphI GGTGA 3 cut(s) 188, 516, 918
Hpy166II GTNNAC 4 cut(s) 352, 417, 736, 778
Hpy188I TCNGA 7 cut(s) 367, 450, 466, 505, 637, 719, 811
Hpy188III TCNNGA 7 cut(s) 119, 389, 560, 684, 839, 884, 917
Hpy8I GTNNAC 4 cut(s) 352, 417, 736, 778
Hpy99I CGWCG 2 cut(s) 788, 863
HpyAV CCTTC 3 cut(s) 63, 240, 719
HpyCH4III ACNGT 2 cut(s) 377, 429
HpyCH4IV ACGT 1 cut(s) 533
HpyCH4V TGCA 5 cut(s) 305, 338, 461, 538, 736
HpyF10VI GCNNNNNNNGC 7 cut(s) 130, 544, 733, 789, 798, 863, 906
HpyF3I CTNAG 4 cut(s) 364, 502, 810, 951
HpySE526I ACGT 1 cut(s) 533
Hsp92I GRCGYC 2 cut(s) 870, 933
Hsp92II CATG 3 cut(s) 122, 392, 887
HspAI GCGC 2 cut(s) 441, 742
Ksp22I TGATCA 2 cut(s) 445, 568
Kzo9I GATC 7 cut(s) 150, 391, 445, 568, 806, 901, 919
LmnI GCTCC 1 cut(s) 863
Lsp1109I GCAGC 7 cut(s) 136, 229, 232, 550, 553, 556, 884
LweI GCATC 4 cut(s) 292, 470, 886, 949
MaeI CTAG 5 cut(s) 66, 89, 321, 839, 917
MaeII ACGT 1 cut(s) 533
MaeIII GTNAC 2 cut(s) 176, 924
MalI GATC 7 cut(s) 152, 393, 447, 570, 808, 903, 921
MbiI CCGCTC 1 cut(s) 866
MboI GATC 7 cut(s) 150, 391, 445, 568, 806, 901, 919
MboII GAAGA 5 cut(s) 43, 311, 510, 872, 935
MfeI CAATTG 1 cut(s) 256
MflI RGATCY 1 cut(s) 806
MhlI GDGCHC 4 cut(s) 214, 729, 738, 816
MluCI AATT 4 cut(s) 250, 256, 276, 641
MlyI GAGTC 1 cut(s) 422
MmeI TCCRAC 1 cut(s) 784
MslI CAYNNNNRTG 2 cut(s) 608, 882
MspA1I CMGCKG 1 cut(s) 792
MspI CCGG 2 cut(s) 729, 929
MspR9I CCNGG 1 cut(s) 729
MunI CAATTG 1 cut(s) 256
Mva1269I GAATGC 1 cut(s) 67
MvnI CGCG 1 cut(s) 801
MwoI GCNNNNNNNGC 7 cut(s) 130, 544, 733, 789, 798, 863, 906
NciI CCSGG 1 cut(s) 729
NdeII GATC 7 cut(s) 150, 391, 445, 568, 806, 901, 919
NlaIII CATG 3 cut(s) 122, 392, 887
NlaIV GGNNCC 2 cut(s) 211, 619
NmeAIII GCCGAG 1 cut(s) 898
NmuCI GTSAC 2 cut(s) 176, 924
NspV TTCGAA 1 cut(s) 666
PagI TCATGA 3 cut(s) 118, 388, 883
PceI AGGCCT 1 cut(s) 833
PcsI WCGNNNNNNNCGW 1 cut(s) 780
PctI GAATGC 1 cut(s) 67
PfeI GAWTC 1 cut(s) 226
PflFI GACNNNGTC 1 cut(s) 76
PkrI GCNGC 9 cut(s) 126, 219, 222, 540, 543, 546, 622, 794, 899
PleI GAGTC 1 cut(s) 421
PpsI GAGTC 1 cut(s) 421
PspEI GGTNACC 1 cut(s) 924
PspFI CCCAGC 2 cut(s) 213, 905
PspN4I GGNNCC 2 cut(s) 211, 619
PsrI GAACNNNNNNTAC 2 cut(s) 84, 116
PstNI CAGNNNCTG 1 cut(s) 550
PsuI RGATCY 1 cut(s) 806
PsyI GACNNNGTC 1 cut(s) 76
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
RseI CAYNNNNRTG 2 cut(s) 608, 882
SalI GTCGAC 1 cut(s) 415
SatI GCNGC 9 cut(s) 125, 218, 221, 539, 542, 545, 621, 793, 898
Sau3AI GATC 7 cut(s) 150, 391, 445, 568, 806, 901, 919
SchI GAGTC 1 cut(s) 422
ScrFI CCNGG 1 cut(s) 729
SduI GDGCHC 4 cut(s) 214, 729, 738, 816
SetI ASST 6 cut(s) 202, 536, 552, 694, 711, 891
SfaNI GCATC 4 cut(s) 292, 470, 886, 949
SfuI TTCGAA 1 cut(s) 666
SmiMI CAYNNNNRTG 2 cut(s) 608, 882
SmlI CTYRAG 1 cut(s) 558
SmoI CTYRAG 1 cut(s) 558
SpeI ACTAGT 1 cut(s) 320
Sse9I AATT 4 cut(s) 250, 256, 276, 641
SseBI AGGCCT 1 cut(s) 833
SsiI CCGC 5 cut(s) 621, 792, 795, 816, 866
SspMI CTAG 5 cut(s) 66, 89, 321, 839, 917
StuI AGGCCT 1 cut(s) 833
StyD4I CCNGG 1 cut(s) 727
TaaI ACNGT 2 cut(s) 377, 429
TaiI ACGT 1 cut(s) 536
TaqI TCGA 2 cut(s) 416, 666
TaqII GACCGA 1 cut(s) 912
TasI AATT 4 cut(s) 250, 256, 276, 641
TatI WGTACW 1 cut(s) 260
TauI GCSGC 2 cut(s) 623, 795
TfiI GAWTC 1 cut(s) 226
TseFI GTSAC 2 cut(s) 176, 924
TseI GCWGC 7 cut(s) 124, 217, 220, 538, 541, 544, 897
Tsp45I GTSAC 2 cut(s) 176, 924
TspDTI ATGAA 5 cut(s) 17, 306, 510, 654, 872
TspGWI ACGGA 1 cut(s) 876
Tth111I GACNNNGTC 1 cut(s) 76
VneI GTGCAC 1 cut(s) 734
XapI RAATTY 1 cut(s) 641
XbaI TCTAGA 2 cut(s) 838, 916
XmiI GTMKAC 2 cut(s) 351, 416
XspI CTAG 5 cut(s) 66, 89, 321, 839, 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.