FvH4_5g31090

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013683
Physical Location & Seq
Forward (+)
22012124 .. 22013781
1658 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g31090.t1

Sequence Viewer

Length: 1227 bp
ATGGCGTCTTGTTTTTCTTCAAGTTCTATGTTTAGTGTGGAGTTGATAACCCTGGACGAGCTACAGTGGGGAGTTGTGAAGACCTTCAAGCCCACGGATGCACAATTAGTGGGTCATTATCTGTATAATCAGATCATGTTGGGTCATAGTGGAAATGGGAAGCAGCCATTTCCGGAATTGGATATCTGTGGAGAAACAGGGATGGTGCCTTGGGCTATCTGGGATTCCTTTGACCCAATAAGATTTCCTCACCAAGACTTCTTGTATTTCTTCGTAAGACTCAAGAAATTGAGTCCCAAGGGTAAAGGAAAGCGCTCGTCACGCTCAGTTGGGTCTGGAGGAACTTGGAGCGAAACTGAAACCTCAAAGCCGGTTTTTATTGATGGGTTTCAAGACCCTGTTGGGAGAATGAGGAAGTTCCGATACGAAAACACAAAAGAAGAGTTTGAGCATCAAAGTAAAGCTTGGATGATGGAAGAGTTTTCCATTGATCCCTCCTTTGTACCTTCTTCCTCGGATTTGGTGCTGTGCCGAATGAAAAGGAATAACAACACCAACAAAAGGAAGAGGGAGTCTGAAGAGGATGAGGAGGCCAATGCTAGAAGGACAAAGTGTTTCAAACCACAAGAACAGGTACCCTCTCATTCTCATCATGAGCAGCCGCAGCTCTCCGACATTAATCCTCAAGAATTGTACTGTGTTCAAGAGCTGGTTTGTGAAGACAATGTTGATAAGGAAGTTGATCAACAAGGCAGTAGTGGTGCCCAGCACCAGCAGATTGTTGCTCCTCATTTTGACAACAGTTACAATTGCATTGCTGATCCTGTTATTGTAACTCAAAATGAGAGTGAAGATGCACAGTTGGAGGATGATACTGGTTGGCTTGATGATGTATTGGAGGAAGAAGACCCTTCAAATTCCCTCTCTGAAAACCAAATTTCTGCTGGTGATGATCTGATATCCACTGTAACTGAGTCAACTGATAGACCTTTAGAGGAGGAGAGCACTGATCAAAGTGGCTATGCATCGGAGGGAGCAGGAGGAGAGACACTACCCCCTGCCCTCTTAGAACAACATACATCTGCATCACCATTGATGTTCTCTCAAGATGATGATAACCAAACATTTGCTTTTGCTGTTGATAATCATTTCATTCCTATGGAAGGTGCCTTCTACTTCGAGTCTGATGACAACAGCAACTTTGTCTTCCACTTTGAAAATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

409

Amino Acids

46.2

Weight (kDa)

4.45

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 28 - 163 3.7e-17 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 634
AccB1I GGYRCC 4 cut(s) 205, 634, 761, 1166
AccIII TCCGGA 1 cut(s) 172
AciI CCGC 1 cut(s) 662
AclWI GGATC 2 cut(s) 485, 815
AcsI RAATTY 2 cut(s) 916, 936
AcuI CTGAAG 1 cut(s) 597
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 504, 636, 695
AfeI AGCGCT 1 cut(s) 314
AfiI CCNNNNNNNGG 2 cut(s) 561, 1163
AgsI TTSAA 7 cut(s) 21, 88, 392, 619, 704, 915, 1217
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 4 cut(s) 61, 464, 667, 709
AluI AGCT 4 cut(s) 61, 464, 667, 709
Alw21I GWGCWC 1 cut(s) 1007
Alw26I GTCTC 1 cut(s) 1040
AlwI GGATC 2 cut(s) 485, 815
Aor13HI TCCGGA 1 cut(s) 172
Aor51HI AGCGCT 1 cut(s) 314
AoxI GGCC 1 cut(s) 591
ApeKI GCWGC 3 cut(s) 163, 658, 664
ApoI RAATTY 2 cut(s) 916, 936
AseI ATTAAT 1 cut(s) 678
Asp700I GAANNNNTTC 1 cut(s) 83
Asp718I GGTACC 1 cut(s) 634
AspLEI GCGC 1 cut(s) 315
AsuHPI GGTGA 3 cut(s) 242, 959, 1080
BaeGI GKGCMC 1 cut(s) 766
BanI GGYRCC 4 cut(s) 205, 634, 761, 1166
BarI GAAGNNNNNNTAC 2 cut(s) 407, 439
BbsI GAAGAC 4 cut(s) 86, 726, 912, 1198
Bbv12I GWGCWC 1 cut(s) 1007
BbvI GCAGC 3 cut(s) 175, 670, 676
BccI CCATC 3 cut(s) 196, 377, 466
BciT130I CCWGG 1 cut(s) 53
BclI TGATCA 2 cut(s) 742, 1009
BcoDI GTCTC 1 cut(s) 1040
BfaI CTAG 1 cut(s) 600
BfmI CTRYAG 1 cut(s) 62
BfoI RGCGCY 1 cut(s) 316
BisI GCNGC 4 cut(s) 164, 659, 662, 665
BlsI GCNGC 4 cut(s) 165, 660, 663, 666
Bme1390I CCNGG 1 cut(s) 53
BmiI GGNNCC 4 cut(s) 207, 636, 763, 1168
BmrFI CCNGG 1 cut(s) 53
BmsI GCATC 5 cut(s) 88, 460, 844, 1034, 1094
BpiI GAAGAC 4 cut(s) 86, 726, 912, 1198
BpmI CTGGAG 1 cut(s) 357
BpuEI CTTGAG 3 cut(s) 266, 669, 1089
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 5 cut(s) 51, 93, 209, 297, 513
BsaWI WCCGGW 1 cut(s) 172
Bsc4I CCNNNNNNNGG 2 cut(s) 561, 1163
Bse118I RCCGGY 1 cut(s) 370
Bse1I ACTGG 1 cut(s) 880
Bse3DI GCAATG 1 cut(s) 813
BseAI TCCGGA 1 cut(s) 172
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 5 cut(s) 51, 93, 209, 297, 513
BseGI GGATG 5 cut(s) 103, 207, 474, 589, 874
BseLI CCNNNNNNNGG 2 cut(s) 561, 1163
BseMI GCAATG 1 cut(s) 813
BseMII CTCAG 2 cut(s) 339, 963
BseNI ACTGG 1 cut(s) 880
BseRI GAGGAG 5 cut(s) 602, 777, 1010, 1013, 1056
BseSI GKGCMC 1 cut(s) 766
BseXI GCAGC 3 cut(s) 175, 670, 676
BseYI CCCAGC 1 cut(s) 765
BshFI GGCC 1 cut(s) 593
BshNI GGYRCC 4 cut(s) 205, 634, 761, 1166
BsiHKAI GWGCWC 1 cut(s) 1007
BsiSI CCGG 2 cut(s) 173, 371
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 2 cut(s) 561, 1163
BsmAI GTCTC 1 cut(s) 1040
BsmFI GGGAC 1 cut(s) 279
BsnI GGCC 1 cut(s) 593
Bsp1286I GDGCHC 2 cut(s) 766, 1007
Bsp13I TCCGGA 1 cut(s) 172
Bsp143I GATC 6 cut(s) 132, 490, 742, 820, 952, 1009
BspACI CCGC 1 cut(s) 662
BspANI GGCC 1 cut(s) 593
BspCNI CTCAG 2 cut(s) 338, 964
BspEI TCCGGA 1 cut(s) 172
BspHI TCATGA 1 cut(s) 652
BspLI GGNNCC 4 cut(s) 207, 636, 763, 1168
BspPI GGATC 2 cut(s) 485, 815
BspT107I GGYRCC 4 cut(s) 205, 634, 761, 1166
BsrDI GCAATG 1 cut(s) 813
BsrFI RCCGGY 1 cut(s) 370
BsrI ACTGG 1 cut(s) 880
BssAI RCCGGY 1 cut(s) 370
BssECI CCNNGG 5 cut(s) 51, 93, 209, 297, 513
BssMI GATC 6 cut(s) 132, 490, 742, 820, 952, 1009
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 209, 297
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 5 cut(s) 66, 698, 803, 861, 967
Bst6I CTCTTC 4 cut(s) 435, 471, 560, 573
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 3 cut(s) 325, 972, 1066
BstDSI CCRYGG 1 cut(s) 93
BstENI CCTNNNNNAGG 1 cut(s) 1161
BstF5I GGATG 5 cut(s) 103, 207, 474, 589, 874
BstH2I RGCGCY 1 cut(s) 316
BstHHI GCGC 1 cut(s) 315
BstKTI GATC 6 cut(s) 135, 493, 745, 823, 955, 1012
BstMAI GTCTC 1 cut(s) 1040
BstMBI GATC 6 cut(s) 132, 490, 742, 820, 952, 1009
BstMWI GCNNNNNNNGC 2 cut(s) 321, 664
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 51
BstSFI CTRYAG 1 cut(s) 62
BstSLI GKGCMC 1 cut(s) 766
BstV1I GCAGC 3 cut(s) 175, 670, 676
BstV2I GAAGAC 4 cut(s) 86, 726, 912, 1198
BsuRI GGCC 1 cut(s) 593
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 5 cut(s) 103, 207, 474, 589, 874
BtsIMutI CAGTG 3 cut(s) 71, 963, 1005
CciI TCATGA 1 cut(s) 652
CfoI GCGC 1 cut(s) 315
Cfr10I RCCGGY 1 cut(s) 370
Csp6I GTAC 3 cut(s) 503, 635, 694
CviAII CATG 2 cut(s) 136, 653
CviQI GTAC 3 cut(s) 503, 635, 694
DdeI CTNAG 3 cut(s) 325, 972, 1066
DpnI GATC 6 cut(s) 134, 492, 744, 822, 954, 1011
DpnII GATC 6 cut(s) 132, 490, 742, 820, 952, 1009
Eam1104I CTCTTC 4 cut(s) 435, 471, 560, 573
EarI CTCTTC 4 cut(s) 435, 471, 560, 573
Eco130I CCWWGG 2 cut(s) 209, 297
Eco32I GATATC 2 cut(s) 184, 960
Eco47III AGCGCT 1 cut(s) 314
Eco57I CTGAAG 1 cut(s) 597
EcoNI CCTNNNNNAGG 1 cut(s) 1161
EcoRII CCWGG 1 cut(s) 51
EcoRV GATATC 2 cut(s) 184, 960
EcoT14I CCWWGG 2 cut(s) 209, 297
EcoT22I ATGCAT 1 cut(s) 1027
ErhI CCWWGG 2 cut(s) 209, 297
FaeI CATG 2 cut(s) 139, 656
FaiI YATR 8 cut(s) 29, 126, 137, 147, 654, 1023, 1077, 1160
FalI AAGNNNNNCTT 2 cut(s) 448, 480
FaqI GGGAC 1 cut(s) 279
FatI CATG 2 cut(s) 135, 652
FbaI TGATCA 2 cut(s) 742, 1009
Fnu4HI GCNGC 4 cut(s) 164, 659, 662, 665
FokI GGATG 5 cut(s) 110, 214, 481, 596, 881
Fsp4HI GCNGC 4 cut(s) 164, 659, 662, 665
FspBI CTAG 1 cut(s) 600
GlaI GCGC 1 cut(s) 314
GluI GCNGC 4 cut(s) 164, 659, 662, 665
GsaI CCCAGC 1 cut(s) 769
GsuI CTGGAG 1 cut(s) 357
HaeII RGCGCY 1 cut(s) 316
HaeIII GGCC 1 cut(s) 593
HapII CCGG 2 cut(s) 173, 371
HhaI GCGC 1 cut(s) 315
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 139, 656
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HincII GTYRAC 1 cut(s) 978
HindII GTYRAC 1 cut(s) 978
HindIII AAGCTT 1 cut(s) 462
HinfI GANTC 6 cut(s) 224, 279, 292, 572, 974, 1181
HpaII CCGG 2 cut(s) 173, 371
HphI GGTGA 3 cut(s) 242, 959, 1080
Hpy166II GTNNAC 1 cut(s) 978
Hpy188I TCNGA 9 cut(s) 132, 422, 517, 577, 673, 928, 957, 1030, 1186
Hpy188III TCNNGA 8 cut(s) 173, 283, 336, 392, 653, 686, 704, 1106
Hpy8I GTNNAC 1 cut(s) 978
HpyAV CCTTC 6 cut(s) 94, 516, 597, 921, 1157, 1180
HpyCH4III ACNGT 5 cut(s) 66, 698, 803, 861, 967
HpyCH4V TGCA 5 cut(s) 101, 813, 857, 1025, 1085
HpyF10VI GCNNNNNNNGC 2 cut(s) 321, 664
HpyF3I CTNAG 3 cut(s) 325, 972, 1066
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 139, 656
HspAI GCGC 1 cut(s) 313
Kpn2I TCCGGA 1 cut(s) 172
KpnI GGTACC 1 cut(s) 638
Ksp22I TGATCA 2 cut(s) 742, 1009
Kzo9I GATC 6 cut(s) 132, 490, 742, 820, 952, 1009
LmnI GCTCC 3 cut(s) 348, 790, 1034
Lsp1109I GCAGC 3 cut(s) 175, 670, 676
LweI GCATC 5 cut(s) 88, 460, 844, 1034, 1094
MaeI CTAG 1 cut(s) 600
MaeIII GTNAC 4 cut(s) 318, 803, 832, 967
MalI GATC 6 cut(s) 134, 492, 744, 822, 954, 1011
MboI GATC 6 cut(s) 132, 490, 742, 820, 952, 1009
MfeI CAATTG 1 cut(s) 808
MhlI GDGCHC 2 cut(s) 766, 1007
MluCI AATT 7 cut(s) 104, 176, 287, 689, 808, 916, 936
MlyI GAGTC 5 cut(s) 273, 301, 581, 983, 1190
MmeI TCCRAC 2 cut(s) 696, 843
Mph1103I ATGCAT 1 cut(s) 1027
MroI TCCGGA 1 cut(s) 172
MroXI GAANNNNTTC 1 cut(s) 83
MseI TTAA 1 cut(s) 678
MslI CAYNNNNRTG 1 cut(s) 1157
MspI CCGG 2 cut(s) 173, 371
MspR9I CCNGG 1 cut(s) 53
MunI CAATTG 1 cut(s) 808
MvaI CCWGG 1 cut(s) 53
MwoI GCNNNNNNNGC 2 cut(s) 321, 664
NdeII GATC 6 cut(s) 132, 490, 742, 820, 952, 1009
NlaIII CATG 2 cut(s) 139, 656
NlaIV GGNNCC 4 cut(s) 207, 636, 763, 1168
NmuCI GTSAC 1 cut(s) 318
NsiI ATGCAT 1 cut(s) 1027
PagI TCATGA 1 cut(s) 652
PdmI GAANNNNTTC 1 cut(s) 83
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 4 cut(s) 165, 660, 663, 666
PleI GAGTC 5 cut(s) 273, 300, 580, 982, 1189
PpsI GAGTC 5 cut(s) 273, 300, 580, 982, 1189
PshBI ATTAAT 1 cut(s) 678
Psp6I CCWGG 1 cut(s) 51
PspFI CCCAGC 1 cut(s) 765
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 4 cut(s) 207, 636, 763, 1168
RsaI GTAC 3 cut(s) 504, 636, 695
RsaNI GTAC 3 cut(s) 503, 635, 694
RseI CAYNNNNRTG 1 cut(s) 1157
SaqAI TTAA 1 cut(s) 678
SatI GCNGC 4 cut(s) 164, 659, 662, 665
Sau3AI GATC 6 cut(s) 132, 490, 742, 820, 952, 1009
SchI GAGTC 5 cut(s) 273, 301, 581, 983, 1190
ScrFI CCNGG 1 cut(s) 53
SduI GDGCHC 2 cut(s) 766, 1007
SfaNI GCATC 5 cut(s) 88, 460, 844, 1034, 1094
SfcI CTRYAG 1 cut(s) 62
SmiMI CAYNNNNRTG 1 cut(s) 1157
SmlI CTYRAG 3 cut(s) 281, 684, 1104
SmoI CTYRAG 3 cut(s) 281, 684, 1104
Sse9I AATT 7 cut(s) 104, 176, 287, 689, 808, 916, 936
SsiI CCGC 1 cut(s) 662
SspMI CTAG 1 cut(s) 600
StyD4I CCNGG 1 cut(s) 51
StyI CCWWGG 2 cut(s) 209, 297
TaaI ACNGT 5 cut(s) 66, 698, 803, 861, 967
TaqI TCGA 1 cut(s) 1179
TasI AATT 7 cut(s) 104, 176, 287, 689, 808, 916, 936
TatI WGTACW 1 cut(s) 693
TauI GCSGC 1 cut(s) 664
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 1 cut(s) 678
Tru9I TTAA 1 cut(s) 678
TscAI CASTG 3 cut(s) 71, 970, 1012
TseFI GTSAC 1 cut(s) 318
TseI GCWGC 3 cut(s) 163, 658, 664
Tsp45I GTSAC 1 cut(s) 318
TspDTI ATGAA 2 cut(s) 551, 1141
TspGWI ACGGA 1 cut(s) 110
TspRI CASTG 3 cut(s) 71, 970, 1012
VspI ATTAAT 1 cut(s) 678
XagI CCTNNNNNAGG 1 cut(s) 1161
XapI RAATTY 2 cut(s) 916, 936
XcmI CCANNNNNNNNNTGG 1 cut(s) 941
XmnI GAANNNNTTC 1 cut(s) 83
XspI CTAG 1 cut(s) 600
Zsp2I ATGCAT 1 cut(s) 1027
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.