RLG00000009487

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0013683
Physical Location & Seq
Forward (+)
53483767 .. 53484683
917 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009487

Sequence Viewer

Length: 819 bp
ATGAAAAGGAACGAAAACAATAAGAAAAGGAAGAGGAAGTTTGTTGAGGATGGGGAGGAGAATGCTAGAAGGACAAAGTCTTTCAAATTAGAACAGCAACTACCCTCTCATTCTCATCATGAGCAGCAACAGCAAGTTGATGAGGAATGGATCAATGTTGATGACTTGTTCTGTGGTGACAATGTTGATGAGGAACAAGGTAGTGGTGGTGCCCAGCAGCAGCAGATTCCTTCTCCTCATTTTGACAACAATTACAATTGTACTACTGATGATGTAATTGTATCTGTAAATGAGAGTGAAGATGCAGAGTTAGATGATACTAGTTGGCTTGATGTTGCATTGGAGGAAGTAGACCCTAACCCCTCAGAACAACACAGTTCTGCTGGTCATGATCTAATAATGGCTGTAAATGAGTCGACTTATTTACAGTTTGAGGAGGGCGCTGATCAGAATGGCTCTGCATCGGAGGGAGTAGGAGGGGAGACACTACCCCCTGCCCTCTCAGAAAAACATACATCTTCATCACCATTGACGTTGCAGCAGCAGCACCTGTTCTCTCAAGAAGATGATCAAACATTTGATTTTGCTTGTGATAGTGATATCATTCCTATGGATGGTGCCGCTTACTTTCAGTCTGATGAATTTAGCAACTTTTACTTCCACTTCGAAAATCACTACTTATCTGGAGAAGCTACACTACCACAATTAAAGCAAGTTTGTAACAAGAGTCTTGATGAGTCTTCATTAGCTACTGCTAACACTAGTATAGATATTCTTATTAGATATTCTATTGCTGCACAAAGTGTAGCAAGTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

273

Amino Acids

30.42

Weight (kDa)

4.26

Isoelectric Point (pI)

59.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 209, 617
AccI GTMKAC 2 cut(s) 351, 416
AciI CCGC 1 cut(s) 621
AclWI GGATC 1 cut(s) 158
AcsI RAATTY 1 cut(s) 641
AdeI CACNNNGTG 1 cut(s) 803
AfaI GTAC 1 cut(s) 262
AfiI CCNNNNNNNGG 1 cut(s) 614
AgsI TTSAA 1 cut(s) 85
AhlI ACTAGT 2 cut(s) 320, 761
AluBI AGCT 2 cut(s) 692, 749
AluI AGCT 2 cut(s) 692, 749
Alw26I GTCTC 1 cut(s) 476
AlwI GGATC 1 cut(s) 158
AlwNI CAGNNNCTG 1 cut(s) 550
ApeKI GCWGC 7 cut(s) 124, 217, 220, 538, 541, 544, 794
ApoI RAATTY 1 cut(s) 641
AspLEI GCGC 1 cut(s) 443
AsuHPI GGTGA 2 cut(s) 188, 516
AsuII TTCGAA 1 cut(s) 666
BaeGI GKGCMC 1 cut(s) 214
BanI GGYRCC 2 cut(s) 209, 617
BarI GAAGNNNNNNTAC 2 cut(s) 681, 713
BbsI GAAGAC 1 cut(s) 732
BbvI GCAGC 7 cut(s) 136, 229, 232, 550, 553, 556, 781
BccI CCATC 2 cut(s) 44, 608
BclI TGATCA 2 cut(s) 445, 568
BcoDI GTCTC 1 cut(s) 476
BcuI ACTAGT 2 cut(s) 320, 761
BfaI CTAG 3 cut(s) 66, 321, 762
BfoI RGCGCY 1 cut(s) 444
BisI GCNGC 8 cut(s) 125, 218, 221, 539, 542, 545, 621, 795
BlsI GCNGC 8 cut(s) 126, 219, 222, 540, 543, 546, 622, 796
BmiI GGNNCC 2 cut(s) 211, 619
BmsI GCATC 2 cut(s) 292, 470
BpiI GAAGAC 1 cut(s) 732
BpmI CTGGAG 1 cut(s) 705
Bpu14I TTCGAA 1 cut(s) 666
BpuEI CTTGAG 1 cut(s) 543
Bsc4I CCNNNNNNNGG 1 cut(s) 614
BseGI GGATG 2 cut(s) 55, 619
BseLI CCNNNNNNNGG 1 cut(s) 614
BseMII CTCAG 2 cut(s) 378, 516
BseRI GAGGAG 3 cut(s) 71, 225, 449
BseSI GKGCMC 1 cut(s) 214
BseXI GCAGC 7 cut(s) 136, 229, 232, 550, 553, 556, 781
BseYI CCCAGC 1 cut(s) 213
BsgI GTGCAG 1 cut(s) 780
BshNI GGYRCC 2 cut(s) 209, 617
BslI CCNNNNNNNGG 1 cut(s) 614
BsmAI GTCTC 1 cut(s) 476
BsmI GAATGC 1 cut(s) 67
Bsp119I TTCGAA 1 cut(s) 666
Bsp1286I GDGCHC 1 cut(s) 214
Bsp143I GATC 4 cut(s) 150, 391, 445, 568
BspACI CCGC 1 cut(s) 621
BspCNI CTCAG 2 cut(s) 377, 515
BspHI TCATGA 2 cut(s) 118, 388
BspLI GGNNCC 2 cut(s) 211, 619
BspPI GGATC 1 cut(s) 158
BspT104I TTCGAA 1 cut(s) 666
BspT107I GGYRCC 2 cut(s) 209, 617
BssMI GATC 4 cut(s) 150, 391, 445, 568
Bst4CI ACNGT 2 cut(s) 377, 429
Bst6I CTCTTC 1 cut(s) 26
BstBI TTCGAA 1 cut(s) 666
BstDEI CTNAG 2 cut(s) 364, 502
BstF5I GGATG 2 cut(s) 55, 619
BstH2I RGCGCY 1 cut(s) 444
BstHHI GCGC 1 cut(s) 443
BstKTI GATC 4 cut(s) 153, 394, 448, 571
BstMAI GTCTC 1 cut(s) 476
BstMBI GATC 4 cut(s) 150, 391, 445, 568
BstMWI GCNNNNNNNGC 2 cut(s) 130, 544
BstSLI GKGCMC 1 cut(s) 214
BstV1I GCAGC 7 cut(s) 136, 229, 232, 550, 553, 556, 781
BstV2I GAAGAC 1 cut(s) 732
BtsCI GGATG 2 cut(s) 55, 619
CaiI CAGNNNCTG 1 cut(s) 550
CciI TCATGA 2 cut(s) 118, 388
CfoI GCGC 1 cut(s) 443
Csp6I GTAC 1 cut(s) 261
CviAII CATG 2 cut(s) 119, 389
CviJI RGCY 5 cut(s) 328, 404, 456, 692, 749
CviKI_1 RGCY 5 cut(s) 328, 404, 456, 692, 749
CviQI GTAC 1 cut(s) 261
DdeI CTNAG 2 cut(s) 364, 502
DpnI GATC 4 cut(s) 152, 393, 447, 570
DpnII GATC 4 cut(s) 150, 391, 445, 568
DraIII CACNNNGTG 1 cut(s) 803
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
Eco32I GATATC 1 cut(s) 601
EcoRV GATATC 1 cut(s) 601
FaeI CATG 2 cut(s) 122, 392
FaiI YATR 5 cut(s) 120, 390, 513, 611, 767
FatI CATG 2 cut(s) 118, 388
FbaI TGATCA 2 cut(s) 445, 568
FblI GTMKAC 2 cut(s) 351, 416
Fnu4HI GCNGC 8 cut(s) 125, 218, 221, 539, 542, 545, 621, 795
FokI GGATG 2 cut(s) 62, 626
Fsp4HI GCNGC 8 cut(s) 125, 218, 221, 539, 542, 545, 621, 795
FspBI CTAG 3 cut(s) 66, 321, 762
GlaI GCGC 1 cut(s) 442
GluI GCNGC 8 cut(s) 125, 218, 221, 539, 542, 545, 621, 795
GsaI CCCAGC 1 cut(s) 217
GsuI CTGGAG 1 cut(s) 705
HaeII RGCGCY 1 cut(s) 444
HhaI GCGC 1 cut(s) 443
Hin1II CATG 2 cut(s) 122, 392
Hin6I GCGC 1 cut(s) 441
HinP1I GCGC 1 cut(s) 441
HincII GTYRAC 1 cut(s) 417
HindII GTYRAC 1 cut(s) 417
HinfI GANTC 4 cut(s) 226, 413, 727, 737
HphI GGTGA 2 cut(s) 188, 516
Hpy166II GTNNAC 2 cut(s) 352, 417
Hpy188I TCNGA 5 cut(s) 367, 450, 466, 505, 637
Hpy188III TCNNGA 5 cut(s) 119, 389, 560, 684, 731
Hpy8I GTNNAC 2 cut(s) 352, 417
HpyAV CCTTC 2 cut(s) 63, 240
HpyCH4III ACNGT 2 cut(s) 377, 429
HpyCH4IV ACGT 1 cut(s) 533
HpyCH4V TGCA 5 cut(s) 305, 338, 461, 538, 797
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 544
HpyF3I CTNAG 2 cut(s) 364, 502
HpySE526I ACGT 1 cut(s) 533
Hsp92II CATG 2 cut(s) 122, 392
HspAI GCGC 1 cut(s) 441
Ksp22I TGATCA 2 cut(s) 445, 568
Kzo9I GATC 4 cut(s) 150, 391, 445, 568
LpnPI CCDG 5 cut(s) 227, 369, 507, 563, 669
Lsp1109I GCAGC 7 cut(s) 136, 229, 232, 550, 553, 556, 781
LweI GCATC 2 cut(s) 292, 470
MaeI CTAG 3 cut(s) 66, 321, 762
MaeII ACGT 1 cut(s) 533
MaeIII GTNAC 2 cut(s) 176, 719
MalI GATC 4 cut(s) 152, 393, 447, 570
MboI GATC 4 cut(s) 150, 391, 445, 568
MboII GAAGA 5 cut(s) 43, 311, 510, 575, 732
MfeI CAATTG 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 6 cut(s) 86, 250, 256, 276, 641, 704
MlyI GAGTC 3 cut(s) 422, 736, 746
MseI TTAA 1 cut(s) 707
MslI CAYNNNNRTG 1 cut(s) 608
MunI CAATTG 1 cut(s) 256
Mva1269I GAATGC 1 cut(s) 67
MwoI GCNNNNNNNGC 2 cut(s) 130, 544
NdeII GATC 4 cut(s) 150, 391, 445, 568
NlaIII CATG 2 cut(s) 122, 392
NlaIV GGNNCC 2 cut(s) 211, 619
NmuCI GTSAC 1 cut(s) 176
NspV TTCGAA 1 cut(s) 666
PagI TCATGA 2 cut(s) 118, 388
PctI GAATGC 1 cut(s) 67
PfeI GAWTC 1 cut(s) 226
PflFI GACNNNGTC 1 cut(s) 76
PkrI GCNGC 8 cut(s) 126, 219, 222, 540, 543, 546, 622, 796
PleI GAGTC 3 cut(s) 421, 735, 745
PpsI GAGTC 3 cut(s) 421, 735, 745
PspFI CCCAGC 1 cut(s) 213
PspN4I GGNNCC 2 cut(s) 211, 619
PsrI GAACNNNNNNTAC 2 cut(s) 84, 116
PstNI CAGNNNCTG 1 cut(s) 550
PsyI GACNNNGTC 1 cut(s) 76
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
RseI CAYNNNNRTG 1 cut(s) 608
SalI GTCGAC 1 cut(s) 415
SaqAI TTAA 1 cut(s) 707
SatI GCNGC 8 cut(s) 125, 218, 221, 539, 542, 545, 621, 795
Sau3AI GATC 4 cut(s) 150, 391, 445, 568
SchI GAGTC 3 cut(s) 422, 736, 746
SduI GDGCHC 1 cut(s) 214
SetI ASST 5 cut(s) 202, 536, 552, 694, 751
SfaNI GCATC 2 cut(s) 292, 470
SfuI TTCGAA 1 cut(s) 666
SmiMI CAYNNNNRTG 1 cut(s) 608
SmlI CTYRAG 1 cut(s) 558
SmoI CTYRAG 1 cut(s) 558
SpeI ACTAGT 2 cut(s) 320, 761
Sse9I AATT 6 cut(s) 86, 250, 256, 276, 641, 704
SsiI CCGC 1 cut(s) 621
SspMI CTAG 3 cut(s) 66, 321, 762
TaaI ACNGT 2 cut(s) 377, 429
TaiI ACGT 1 cut(s) 536
TaqI TCGA 2 cut(s) 416, 666
TasI AATT 6 cut(s) 86, 250, 256, 276, 641, 704
TatI WGTACW 1 cut(s) 260
TauI GCSGC 1 cut(s) 623
TfiI GAWTC 1 cut(s) 226
Tru1I TTAA 1 cut(s) 707
Tru9I TTAA 1 cut(s) 707
TseFI GTSAC 1 cut(s) 176
TseI GCWGC 7 cut(s) 124, 217, 220, 538, 541, 544, 794
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 4 cut(s) 17, 510, 654, 732
Tth111I GACNNNGTC 1 cut(s) 76
XapI RAATTY 1 cut(s) 641
XmiI GTMKAC 2 cut(s) 351, 416
XspI CTAG 3 cut(s) 66, 321, 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.