RLG00000009469

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0013683
Physical Location & Seq
Forward (+)
53336493 .. 53345288
8796 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009469

Sequence Viewer

Length: 1362 bp
ATGGGAAACCCCATTGTTTTGGATAACGTTTTGACTGAGATCAAGGCTGTGGGATCTATGCAGCTGTTCGGTTTCAGGGGTGAGGGTCATGAGGCATCGTTGGCTTTGGTTCCGGCTTATGTAGTGACTCGGACAGAGGCTGGCCATGTGAAGTTTTCCTCTCTGCAAATGGGGCCAATGGGGAGGAAAAGAAAGGTCATTACCAAGTTGGATCGTTTTGGGAAAAAATACTTGGCTTTCCCTGATTCTACACTTAAGGTTGAAGATAATGTATCACTAATTCTGCGACACAAGAATGGTAGGATGTTGGTTTCACCAAAGAAGAAGAAGGCCGGGCGTCCTAAGGGGAGCAAGAATAGAGTGAAATCTATTGAGGAACATGAAGAGAAAATTATACGTAAGTATAAACATCGGGGAAAAGCTTTGAGTTTTGATCAAAACCTTGAAGAGTCTGTCCCTGACAAGGTTGGTCCACAGGTGGTTGTGATGGAGGGGGTGCCTGGGACTGCTCAAGCGTTGGAGTCTACTGATGTGCAACAGCAAGTTGATGAGGAATGGATCAATGTTGATGACTTGTTCTGTGGTGACAATGTTGATGAGGAACAAGGTAGTGGTGGTGCCCAGCAGCAGCAGATTCCTTCTCCTCATTTTGACAACAATTACAATTGTACTACTGATGATGTAATTGTATCTGTAAATGAAAGTGAAGATGCAGAGTTAGATGATACTAGTTGGCTTGATGTTGCATTGGAGGAAGTAGACCCTAACCCCTCAGAACAACACAGTTCTGCTGGTCATGATCTAATAATGGCTGTAAATGAGTCGACTTATTTACAGTTTGAGGAGGGCGCTGATCAGAATGGCTCTGCATCGGAGGGAGTAGGAGGGGAGACACTACCCCCTGCCCTCTCAGAAAAACATACATCTTCATCACCATTGACGTTGCAGCAGCAGCACCTGTTCTCTCAAGATGATGATCAAACATTTGATTTTGCTTGTGATAGTGATATCATTCCTATGGATGGTGCCGCTTACTTTCAGTCTGATGAATTTAGCAACTTTTACTTCCACTTCGAAAATCACTACTTATCTGGAGAAGCTACACTACCACAAGACCTTCTCCTCCGATTTGAGCCCGGCGTGCACCAGCGCTTCAACCCCCAACTTCCCACCGAAAATCTCGTTGACGGCGACGACAGCGGCGGTCGCGTTGGATCTGAGCCCGCTTCTCAAAGGCAGGCCTTTCTAGAGAGAGAGGGAGAGGCCGACGGAGCGGACGCCGAGCATCTTCATGACCTCAATGGCTGCGATCCCAGCACCATTCTAGATCGGTCACCGGACGCCGAGCATCTTCTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

454

Amino Acids

49.94

Weight (kDa)

4.6

Isoelectric Point (pI)

44.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 496, 617, 1025
AccBSI CCGCTC 1 cut(s) 1274
AccI GTMKAC 3 cut(s) 524, 759, 824
AccII CGCG 1 cut(s) 1209
AciI CCGC 5 cut(s) 1029, 1200, 1203, 1224, 1274
AclI AACGTT 1 cut(s) 27
AclWI GGATC 5 cut(s) 61, 219, 566, 1222, 1304
AcoI YGGCCR 1 cut(s) 142
AcsI RAATTY 1 cut(s) 1049
AcyI GRCGYC 3 cut(s) 337, 1278, 1341
AfaI GTAC 1 cut(s) 670
AfeI AGCGCT 1 cut(s) 1151
AfiI CCNNNNNNNGG 2 cut(s) 463, 1022
AflII CTTAAG 1 cut(s) 254
AgsI TTSAA 3 cut(s) 263, 446, 1156
AhlI ACTAGT 1 cut(s) 728
AjnI CCWGG 1 cut(s) 499
AjuI GAANNNNNNNTTGG 2 cut(s) 215, 247
AluBI AGCT 3 cut(s) 64, 422, 1100
AluI AGCT 3 cut(s) 64, 422, 1100
Alw21I GWGCWC 1 cut(s) 1146
Alw26I GTCTC 1 cut(s) 884
Alw44I GTGCAC 1 cut(s) 1142
AlwI GGATC 5 cut(s) 61, 219, 566, 1222, 1304
AlwNI CAGNNNCTG 2 cut(s) 140, 958
Aor51HI AGCGCT 1 cut(s) 1151
AoxI GGCC 5 cut(s) 142, 173, 330, 1239, 1263
ApaLI GTGCAC 1 cut(s) 1142
ApeKI GCWGC 7 cut(s) 61, 625, 628, 946, 949, 952, 1305
ApoI RAATTY 1 cut(s) 1049
AspLEI GCGC 2 cut(s) 851, 1152
AspS9I GGNCC 2 cut(s) 173, 470
AsuC2I CCSGG 2 cut(s) 334, 1137
AsuHPI GGTGA 5 cut(s) 92, 306, 596, 924, 1326
AsuII TTCGAA 1 cut(s) 1074
AvaII GGWCC 1 cut(s) 470
AxyI CCTNAGG 1 cut(s) 342
BaeGI GKGCMC 2 cut(s) 622, 1146
BalI TGGCCA 1 cut(s) 144
BanI GGYRCC 3 cut(s) 496, 617, 1025
BanII GRGCYC 2 cut(s) 1137, 1224
BarI GAAGNNNNNNTAC 2 cut(s) 1089, 1121
Bbv12I GWGCWC 1 cut(s) 1146
BbvI GCAGC 7 cut(s) 73, 637, 640, 958, 961, 964, 1292
BccI CCATC 2 cut(s) 481, 1016
BceAI ACGGC 1 cut(s) 1204
BciT130I CCWGG 1 cut(s) 501
BclI TGATCA 3 cut(s) 433, 853, 976
BcnI CCSGG 2 cut(s) 334, 1137
BcoDI GTCTC 1 cut(s) 884
BcuI ACTAGT 1 cut(s) 728
BfaI CTAG 3 cut(s) 729, 1247, 1325
BfoI RGCGCY 2 cut(s) 852, 1153
BfrI CTTAAG 1 cut(s) 254
BisI GCNGC 9 cut(s) 62, 626, 629, 947, 950, 953, 1029, 1201, 1306
BlsI GCNGC 9 cut(s) 63, 627, 630, 948, 951, 954, 1030, 1202, 1307
Bme1390I CCNGG 3 cut(s) 334, 501, 1137
Bme18I GGWCC 1 cut(s) 470
BmgT120I GGNCC 2 cut(s) 173, 470
BmiI GGNNCC 5 cut(s) 111, 174, 498, 619, 1027
BmrFI CCNGG 3 cut(s) 334, 501, 1137
BmsI GCATC 5 cut(s) 104, 700, 878, 1294, 1357
BpmI CTGGAG 1 cut(s) 1113
Bpu14I TTCGAA 1 cut(s) 1074
BpuEI CTTGAG 2 cut(s) 495, 951
BpuMI CCSGG 2 cut(s) 334, 1137
BsaAI YACGTR 1 cut(s) 398
BsaBI GATNNNNATC 1 cut(s) 975
BsaHI GRCGYC 3 cut(s) 337, 1278, 1341
BsaJI CCNNGG 1 cut(s) 500
BsaWI WCCGGW 1 cut(s) 1336
Bsc4I CCNNNNNNNGG 2 cut(s) 463, 1022
Bse21I CCTNAGG 1 cut(s) 342
Bse8I GATNNNNATC 1 cut(s) 975
BseBI CCWGG 1 cut(s) 501
BseDI CCNNGG 1 cut(s) 500
BseGI GGATG 2 cut(s) 309, 1027
BseJI GATNNNNATC 1 cut(s) 975
BseLI CCNNNNNNNGG 2 cut(s) 463, 1022
BseMII CTCAG 4 cut(s) 27, 786, 924, 1209
BseRI GAGGAG 3 cut(s) 633, 857, 1112
BseSI GKGCMC 2 cut(s) 622, 1146
BseXI GCAGC 7 cut(s) 73, 637, 640, 958, 961, 964, 1292
BseYI CCCAGC 2 cut(s) 621, 1313
Bsh1236I CGCG 1 cut(s) 1209
Bsh1285I CGRYCG 1 cut(s) 1207
BshFI GGCC 5 cut(s) 144, 175, 332, 1241, 1265
BshNI GGYRCC 3 cut(s) 496, 617, 1025
BsiEI CGRYCG 1 cut(s) 1207
BsiHKAI GWGCWC 1 cut(s) 1146
BsiSI CCGG 4 cut(s) 113, 333, 1137, 1337
BslFI GGGAC 2 cut(s) 440, 517
BslI CCNNNNNNNGG 2 cut(s) 463, 1022
BsmAI GTCTC 1 cut(s) 884
BsmFI GGGAC 2 cut(s) 440, 517
BsnI GGCC 5 cut(s) 144, 175, 332, 1241, 1265
Bsp119I TTCGAA 1 cut(s) 1074
Bsp1286I GDGCHC 4 cut(s) 622, 1137, 1146, 1224
BspACI CCGC 5 cut(s) 1029, 1200, 1203, 1224, 1274
BspANI GGCC 5 cut(s) 144, 175, 332, 1241, 1265
BspCNI CTCAG 4 cut(s) 28, 785, 923, 1210
BspFNI CGCG 1 cut(s) 1209
BspHI TCATGA 3 cut(s) 88, 796, 1291
BspLI GGNNCC 5 cut(s) 111, 174, 498, 619, 1027
BspPI GGATC 5 cut(s) 61, 219, 566, 1222, 1304
BspT104I TTCGAA 1 cut(s) 1074
BspT107I GGYRCC 3 cut(s) 496, 617, 1025
BspTI CTTAAG 1 cut(s) 254
BsrBI CCGCTC 1 cut(s) 1274
BssECI CCNNGG 1 cut(s) 500
BssNI GRCGYC 3 cut(s) 337, 1278, 1341
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 2 cut(s) 785, 837
Bst6I CTCTTC 2 cut(s) 378, 441
BstACI GRCGYC 3 cut(s) 337, 1278, 1341
BstAFI CTTAAG 1 cut(s) 254
BstBAI YACGTR 1 cut(s) 398
BstBI TTCGAA 1 cut(s) 1074
BstC8I GCNNGC 4 cut(s) 142, 1142, 1224, 1239
BstDEI CTNAG 6 cut(s) 36, 342, 772, 910, 1218, 1359
BstEII GGTNACC 1 cut(s) 1332
BstF5I GGATG 2 cut(s) 309, 1027
BstFNI CGCG 1 cut(s) 1209
BstH2I RGCGCY 2 cut(s) 852, 1153
BstHHI GCGC 2 cut(s) 851, 1152
BstMAI GTCTC 1 cut(s) 884
BstMCI CGRYCG 1 cut(s) 1207
BstMWI GCNNNNNNNGC 8 cut(s) 101, 172, 952, 1141, 1197, 1206, 1271, 1314
BstNI CCWGG 1 cut(s) 501
BstPI GGTNACC 1 cut(s) 1332
BstSCI CCNGG 3 cut(s) 332, 499, 1135
BstSLI GKGCMC 2 cut(s) 622, 1146
BstSNI TACGTA 1 cut(s) 398
BstUI CGCG 1 cut(s) 1209
BstV1I GCAGC 7 cut(s) 73, 637, 640, 958, 961, 964, 1292
BstX2I RGATCY 2 cut(s) 53, 1214
BstXI CCANNNNNNTGG 1 cut(s) 19
BstYI RGATCY 2 cut(s) 53, 1214
Bsu36I CCTNAGG 1 cut(s) 342
BsuRI GGCC 5 cut(s) 144, 175, 332, 1241, 1265
BtsCI GGATG 2 cut(s) 309, 1027
Cac8I GCNNGC 4 cut(s) 142, 1142, 1224, 1239
CaiI CAGNNNCTG 2 cut(s) 140, 958
CciI TCATGA 3 cut(s) 88, 796, 1291
CfoI GCGC 2 cut(s) 851, 1152
Cfr13I GGNCC 2 cut(s) 173, 470
CseI GACGC 3 cut(s) 326, 1286, 1349
Csp6I GTAC 1 cut(s) 669
CviAII CATG 5 cut(s) 89, 146, 380, 797, 1292
CviQI GTAC 1 cut(s) 669
DdeI CTNAG 6 cut(s) 36, 342, 772, 910, 1218, 1359
EaeI YGGCCR 1 cut(s) 142
Eam1104I CTCTTC 2 cut(s) 378, 441
EarI CTCTTC 2 cut(s) 378, 441
Eco105I TACGTA 1 cut(s) 398
Eco147I AGGCCT 1 cut(s) 1241
Eco24I GRGCYC 2 cut(s) 1137, 1224
Eco32I GATATC 1 cut(s) 1009
Eco47I GGWCC 1 cut(s) 470
Eco47III AGCGCT 1 cut(s) 1151
Eco81I CCTNAGG 1 cut(s) 342
Eco91I GGTNACC 1 cut(s) 1332
EcoO65I GGTNACC 1 cut(s) 1332
EcoRII CCWGG 1 cut(s) 499
EcoRV GATATC 1 cut(s) 1009
EcoT38I GRGCYC 2 cut(s) 1137, 1224
FaeI CATG 5 cut(s) 92, 149, 383, 800, 1295
FaqI GGGAC 2 cut(s) 440, 517
FatI CATG 5 cut(s) 88, 145, 379, 796, 1291
FauI CCCGC 1 cut(s) 1231
FbaI TGATCA 3 cut(s) 433, 853, 976
FblI GTMKAC 3 cut(s) 524, 759, 824
Fnu4HI GCNGC 9 cut(s) 62, 626, 629, 947, 950, 953, 1029, 1201, 1306
FokI GGATG 2 cut(s) 316, 1034
FriOI GRGCYC 2 cut(s) 1137, 1224
Fsp4HI GCNGC 9 cut(s) 62, 626, 629, 947, 950, 953, 1029, 1201, 1306
FspBI CTAG 3 cut(s) 729, 1247, 1325
GlaI GCGC 2 cut(s) 850, 1151
GluI GCNGC 9 cut(s) 62, 626, 629, 947, 950, 953, 1029, 1201, 1306
GsaI CCCAGC 2 cut(s) 625, 1317
GsuI CTGGAG 1 cut(s) 1113
HaeII RGCGCY 2 cut(s) 852, 1153
HaeIII GGCC 5 cut(s) 144, 175, 332, 1241, 1265
HapII CCGG 4 cut(s) 113, 333, 1137, 1337
HgaI GACGC 3 cut(s) 326, 1286, 1349
HhaI GCGC 2 cut(s) 851, 1152
Hin1I GRCGYC 3 cut(s) 337, 1278, 1341
Hin1II CATG 5 cut(s) 92, 149, 383, 800, 1295
Hin6I GCGC 2 cut(s) 849, 1150
HinP1I GCGC 2 cut(s) 849, 1150
HincII GTYRAC 2 cut(s) 825, 1186
HindII GTYRAC 2 cut(s) 825, 1186
HindIII AAGCTT 1 cut(s) 420
HinfI GANTC 6 cut(s) 127, 245, 449, 521, 634, 821
HpaII CCGG 4 cut(s) 113, 333, 1137, 1337
HphI GGTGA 5 cut(s) 92, 306, 596, 924, 1326
Hpy166II GTNNAC 6 cut(s) 473, 525, 760, 825, 1144, 1186
Hpy188I TCNGA 8 cut(s) 132, 775, 858, 874, 913, 1045, 1127, 1219
Hpy188III TCNNGA 7 cut(s) 89, 797, 968, 1092, 1247, 1292, 1325
Hpy8I GTNNAC 6 cut(s) 473, 525, 760, 825, 1144, 1186
Hpy99I CGWCG 2 cut(s) 1196, 1271
HpyAV CCTTC 3 cut(s) 322, 648, 1127
HpyCH4III ACNGT 2 cut(s) 785, 837
HpyCH4IV ACGT 3 cut(s) 27, 397, 941
HpyCH4V TGCA 8 cut(s) 61, 166, 535, 713, 746, 869, 946, 1144
HpyF10VI GCNNNNNNNGC 8 cut(s) 101, 172, 952, 1141, 1197, 1206, 1271, 1314
HpyF3I CTNAG 6 cut(s) 36, 342, 772, 910, 1218, 1359
HpySE526I ACGT 3 cut(s) 27, 397, 941
Hsp92I GRCGYC 3 cut(s) 337, 1278, 1341
Hsp92II CATG 5 cut(s) 92, 149, 383, 800, 1295
HspAI GCGC 2 cut(s) 849, 1150
Ksp22I TGATCA 3 cut(s) 433, 853, 976
LmnI GCTCC 2 cut(s) 348, 1271
Lsp1109I GCAGC 7 cut(s) 73, 637, 640, 958, 961, 964, 1292
LweI GCATC 5 cut(s) 104, 700, 878, 1294, 1357
MaeI CTAG 3 cut(s) 729, 1247, 1325
MaeII ACGT 3 cut(s) 27, 397, 941
MaeIII GTNAC 3 cut(s) 124, 584, 1332
MbiI CCGCTC 1 cut(s) 1274
MboII GAAGA 9 cut(s) 275, 334, 337, 395, 458, 719, 918, 1280, 1343
MfeI CAATTG 1 cut(s) 664
MflI RGATCY 2 cut(s) 53, 1214
MhlI GDGCHC 4 cut(s) 622, 1137, 1146, 1224
MlsI TGGCCA 1 cut(s) 144
MluCI AATT 6 cut(s) 279, 390, 658, 664, 684, 1049
MluNI TGGCCA 1 cut(s) 144
MlyI GAGTC 4 cut(s) 121, 458, 530, 830
MmeI TCCRAC 3 cut(s) 189, 498, 1192
Mox20I TGGCCA 1 cut(s) 144
MscI TGGCCA 1 cut(s) 144
MseI TTAA 1 cut(s) 255
MslI CAYNNNNRTG 3 cut(s) 294, 1016, 1290
Msp20I TGGCCA 1 cut(s) 144
MspA1I CMGCKG 2 cut(s) 64, 1200
MspCI CTTAAG 1 cut(s) 254
MspI CCGG 4 cut(s) 113, 333, 1137, 1337
MspR9I CCNGG 3 cut(s) 334, 501, 1137
MunI CAATTG 1 cut(s) 664
MvaI CCWGG 1 cut(s) 501
MvnI CGCG 1 cut(s) 1209
MwoI GCNNNNNNNGC 8 cut(s) 101, 172, 952, 1141, 1197, 1206, 1271, 1314
NciI CCSGG 2 cut(s) 334, 1137
NlaIII CATG 5 cut(s) 92, 149, 383, 800, 1295
NlaIV GGNNCC 5 cut(s) 111, 174, 498, 619, 1027
NmeAIII GCCGAG 1 cut(s) 1306
NmuCI GTSAC 3 cut(s) 124, 584, 1332
NspV TTCGAA 1 cut(s) 1074
PagI TCATGA 3 cut(s) 88, 796, 1291
PceI AGGCCT 1 cut(s) 1241
PcsI WCGNNNNNNNCGW 1 cut(s) 1188
PfeI GAWTC 2 cut(s) 245, 634
PkrI GCNGC 9 cut(s) 63, 627, 630, 948, 951, 954, 1030, 1202, 1307
PleI GAGTC 4 cut(s) 121, 457, 529, 829
PpsI GAGTC 4 cut(s) 121, 457, 529, 829
Ppu21I YACGTR 1 cut(s) 398
Psp1406I AACGTT 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 499
PspEI GGTNACC 1 cut(s) 1332
PspFI CCCAGC 2 cut(s) 621, 1313
PspGI CCWGG 1 cut(s) 499
PspN4I GGNNCC 5 cut(s) 111, 174, 498, 619, 1027
PspPI GGNCC 2 cut(s) 173, 470
PstNI CAGNNNCTG 2 cut(s) 140, 958
PsuI RGATCY 2 cut(s) 53, 1214
PvuII CAGCTG 1 cut(s) 64
RsaI GTAC 1 cut(s) 670
RsaNI GTAC 1 cut(s) 669
RseI CAYNNNNRTG 3 cut(s) 294, 1016, 1290
SalI GTCGAC 1 cut(s) 823
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 9 cut(s) 62, 626, 629, 947, 950, 953, 1029, 1201, 1306
Sau96I GGNCC 2 cut(s) 173, 470
SchI GAGTC 4 cut(s) 121, 458, 530, 830
ScrFI CCNGG 3 cut(s) 334, 501, 1137
SduI GDGCHC 4 cut(s) 622, 1137, 1146, 1224
SfaNI GCATC 5 cut(s) 104, 700, 878, 1294, 1357
SfuI TTCGAA 1 cut(s) 1074
SinI GGWCC 1 cut(s) 470
SmiMI CAYNNNNRTG 3 cut(s) 294, 1016, 1290
SmlI CTYRAG 3 cut(s) 254, 510, 966
SmoI CTYRAG 3 cut(s) 254, 510, 966
SnaBI TACGTA 1 cut(s) 398
SpeI ACTAGT 1 cut(s) 728
Sse9I AATT 6 cut(s) 279, 390, 658, 664, 684, 1049
SseBI AGGCCT 1 cut(s) 1241
SsiI CCGC 5 cut(s) 1029, 1200, 1203, 1224, 1274
SspMI CTAG 3 cut(s) 729, 1247, 1325
StuI AGGCCT 1 cut(s) 1241
StyD4I CCNGG 3 cut(s) 332, 499, 1135
TaaI ACNGT 2 cut(s) 785, 837
TaiI ACGT 3 cut(s) 30, 400, 944
TaqI TCGA 2 cut(s) 824, 1074
TaqII GACCGA 1 cut(s) 1320
TasI AATT 6 cut(s) 279, 390, 658, 664, 684, 1049
TatI WGTACW 1 cut(s) 668
TauI GCSGC 2 cut(s) 1031, 1203
TfiI GAWTC 2 cut(s) 245, 634
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TseFI GTSAC 3 cut(s) 124, 584, 1332
TseI GCWGC 7 cut(s) 61, 625, 628, 946, 949, 952, 1305
Tsp45I GTSAC 3 cut(s) 124, 584, 1332
TspDTI ATGAA 5 cut(s) 396, 714, 918, 1062, 1280
TspGWI ACGGA 1 cut(s) 1284
Vha464I CTTAAG 1 cut(s) 254
VneI GTGCAC 1 cut(s) 1142
VpaK11BI GGWCC 1 cut(s) 470
XapI RAATTY 1 cut(s) 1049
XbaI TCTAGA 2 cut(s) 1246, 1324
XmiI GTMKAC 3 cut(s) 524, 759, 824
XspI CTAG 3 cut(s) 729, 1247, 1325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.