RLG00000009480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0013683
Physical Location & Seq
Forward (+)
53411970 .. 53416728
4759 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009480

Sequence Viewer

Length: 765 bp
ATGCAGCTGTTCGGTTTCAGGGGTGAGGGTCATGAGGCATCGTTGGCTTTGGTTCCGGCTTATGTAGTGACTCGGACAGAGGCTGGCCATGTGAAGTTTTCCTCTCTGCAAATGGGGCCAATGGGGAGGAAAAGAAAGCAACAGCAAGTTGATGAGGAATGGATCAATGTTGATGACTTGTTCTGTGGTGACAATGTTGATGAGGAACAAGGTAGTGGTGGTGCCCAGCAGCAGCAGATTCCTTCTCCTCATTTTGACAACAATTACAATTGTACTACTGATGATGTAATTGTATCTGTAAATGAAAGTGAAGATGCAGAGTTAGATGATACTAGTTGGCTTGATGTTGCATTGGAGGAAGTAGACCCTAACCCCTCAGAACAACACAGTTCTGCTGGTCATGATCTAATAATGGCTGTAAATGAGTCGACTTATTTACAGTTTGAGGAGGGCGCTGATCAGAATGGCTCTGCATCGGAGGGAGTAGGAGGGGAGACACTACCCCCTGCCCTCTCAGAAAAACATACATCTTCATCACCATTGACGTTGCAGCAGCAGCACCTGTTCTCTCAAGATGATGATCAAACATTTGATTTTGCTTGTGATAGTGATATCATTCCTATGGATGGTGCCGCTTACTTTCAGTCTGATGAATTTAGCAACTTTTACTTCCACTTCGAAAATCACTACTTATCTGGAGAAGCTACACTACCACAGTTAGTACCTCATCTTGGAGCCGACAGTGGGTTACTTTTTGGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

27.97

Weight (kDa)

4.05

Isoelectric Point (pI)

51.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 221, 629
AccI GTMKAC 2 cut(s) 363, 428
AciI CCGC 1 cut(s) 633
AclWI GGATC 1 cut(s) 170
AcoI YGGCCR 1 cut(s) 85
AcsI RAATTY 1 cut(s) 653
AfaI GTAC 2 cut(s) 274, 723
AfiI CCNNNNNNNGG 3 cut(s) 626, 731, 744
AhlI ACTAGT 1 cut(s) 332
AluBI AGCT 2 cut(s) 7, 704
AluI AGCT 2 cut(s) 7, 704
Alw26I GTCTC 1 cut(s) 488
AlwI GGATC 1 cut(s) 170
AlwNI CAGNNNCTG 2 cut(s) 83, 562
AoxI GGCC 2 cut(s) 85, 116
ApeKI GCWGC 6 cut(s) 4, 229, 232, 550, 553, 556
ApoI RAATTY 1 cut(s) 653
AspLEI GCGC 1 cut(s) 455
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 3 cut(s) 35, 200, 528
AsuII TTCGAA 1 cut(s) 678
BaeGI GKGCMC 1 cut(s) 226
BalI TGGCCA 1 cut(s) 87
BanI GGYRCC 2 cut(s) 221, 629
BarI GAAGNNNNNNTAC 2 cut(s) 693, 725
BbvI GCAGC 6 cut(s) 16, 241, 244, 562, 565, 568
BccI CCATC 1 cut(s) 620
BclI TGATCA 2 cut(s) 457, 580
BcoDI GTCTC 1 cut(s) 488
BcuI ACTAGT 1 cut(s) 332
BfaI CTAG 1 cut(s) 333
BfoI RGCGCY 1 cut(s) 456
BisI GCNGC 7 cut(s) 5, 230, 233, 551, 554, 557, 633
BlsI GCNGC 7 cut(s) 6, 231, 234, 552, 555, 558, 634
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 5 cut(s) 54, 117, 223, 631, 736
BmsI GCATC 3 cut(s) 47, 304, 482
BpmI CTGGAG 1 cut(s) 717
Bpu14I TTCGAA 1 cut(s) 678
BpuEI CTTGAG 1 cut(s) 555
BsaBI GATNNNNATC 1 cut(s) 579
Bsc4I CCNNNNNNNGG 3 cut(s) 626, 731, 744
Bse8I GATNNNNATC 1 cut(s) 579
BseGI GGATG 1 cut(s) 631
BseJI GATNNNNATC 1 cut(s) 579
BseLI CCNNNNNNNGG 3 cut(s) 626, 731, 744
BseMII CTCAG 2 cut(s) 390, 528
BseRI GAGGAG 2 cut(s) 237, 461
BseSI GKGCMC 1 cut(s) 226
BseXI GCAGC 6 cut(s) 16, 241, 244, 562, 565, 568
BseYI CCCAGC 1 cut(s) 225
BshFI GGCC 2 cut(s) 87, 118
BshNI GGYRCC 2 cut(s) 221, 629
BsiSI CCGG 1 cut(s) 56
BslI CCNNNNNNNGG 3 cut(s) 626, 731, 744
BsmAI GTCTC 1 cut(s) 488
BsnI GGCC 2 cut(s) 87, 118
Bsp119I TTCGAA 1 cut(s) 678
Bsp1286I GDGCHC 1 cut(s) 226
Bsp143I GATC 4 cut(s) 162, 403, 457, 580
BspACI CCGC 1 cut(s) 633
BspANI GGCC 2 cut(s) 87, 118
BspCNI CTCAG 2 cut(s) 389, 527
BspHI TCATGA 2 cut(s) 31, 400
BspLI GGNNCC 5 cut(s) 54, 117, 223, 631, 736
BspPI GGATC 1 cut(s) 170
BspT104I TTCGAA 1 cut(s) 678
BspT107I GGYRCC 2 cut(s) 221, 629
BssMI GATC 4 cut(s) 162, 403, 457, 580
Bst4CI ACNGT 4 cut(s) 389, 441, 717, 743
BstBI TTCGAA 1 cut(s) 678
BstC8I GCNNGC 1 cut(s) 85
BstDEI CTNAG 2 cut(s) 376, 514
BstF5I GGATG 1 cut(s) 631
BstH2I RGCGCY 1 cut(s) 456
BstHHI GCGC 1 cut(s) 455
BstKTI GATC 4 cut(s) 165, 406, 460, 583
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 4 cut(s) 162, 403, 457, 580
BstMWI GCNNNNNNNGC 3 cut(s) 44, 115, 556
BstSLI GKGCMC 1 cut(s) 226
BstV1I GCAGC 6 cut(s) 16, 241, 244, 562, 565, 568
BsuRI GGCC 2 cut(s) 87, 118
BtsCI GGATG 1 cut(s) 631
BtsIMutI CAGTG 1 cut(s) 748
Cac8I GCNNGC 1 cut(s) 85
CaiI CAGNNNCTG 2 cut(s) 83, 562
CciI TCATGA 2 cut(s) 31, 400
CfoI GCGC 1 cut(s) 455
Cfr13I GGNCC 1 cut(s) 116
Csp6I GTAC 2 cut(s) 273, 722
CviAII CATG 3 cut(s) 32, 89, 401
CviQI GTAC 2 cut(s) 273, 722
DdeI CTNAG 2 cut(s) 376, 514
DpnI GATC 4 cut(s) 164, 405, 459, 582
DpnII GATC 4 cut(s) 162, 403, 457, 580
EaeI YGGCCR 1 cut(s) 85
Eco32I GATATC 1 cut(s) 613
EcoRV GATATC 1 cut(s) 613
FaeI CATG 3 cut(s) 35, 92, 404
FaiI YATR 6 cut(s) 33, 63, 90, 402, 525, 623
FatI CATG 3 cut(s) 31, 88, 400
FbaI TGATCA 2 cut(s) 457, 580
FblI GTMKAC 2 cut(s) 363, 428
Fnu4HI GCNGC 7 cut(s) 5, 230, 233, 551, 554, 557, 633
FokI GGATG 1 cut(s) 638
Fsp4HI GCNGC 7 cut(s) 5, 230, 233, 551, 554, 557, 633
FspBI CTAG 1 cut(s) 333
GlaI GCGC 1 cut(s) 454
GluI GCNGC 7 cut(s) 5, 230, 233, 551, 554, 557, 633
GsaI CCCAGC 1 cut(s) 229
GsuI CTGGAG 1 cut(s) 717
HaeII RGCGCY 1 cut(s) 456
HaeIII GGCC 2 cut(s) 87, 118
HapII CCGG 1 cut(s) 56
HhaI GCGC 1 cut(s) 455
Hin1II CATG 3 cut(s) 35, 92, 404
Hin6I GCGC 1 cut(s) 453
HinP1I GCGC 1 cut(s) 453
HincII GTYRAC 1 cut(s) 429
HindII GTYRAC 1 cut(s) 429
HinfI GANTC 3 cut(s) 70, 238, 425
HpaII CCGG 1 cut(s) 56
HphI GGTGA 3 cut(s) 35, 200, 528
Hpy166II GTNNAC 2 cut(s) 364, 429
Hpy188I TCNGA 6 cut(s) 75, 379, 462, 478, 517, 649
Hpy188III TCNNGA 4 cut(s) 32, 401, 572, 696
Hpy8I GTNNAC 2 cut(s) 364, 429
HpyAV CCTTC 1 cut(s) 252
HpyCH4III ACNGT 4 cut(s) 389, 441, 717, 743
HpyCH4IV ACGT 1 cut(s) 545
HpyCH4V TGCA 6 cut(s) 4, 109, 317, 350, 473, 550
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 115, 556
HpyF3I CTNAG 2 cut(s) 376, 514
HpySE526I ACGT 1 cut(s) 545
Hsp92II CATG 3 cut(s) 35, 92, 404
HspAI GCGC 1 cut(s) 453
Ksp22I TGATCA 2 cut(s) 457, 580
Kzo9I GATC 4 cut(s) 162, 403, 457, 580
LmnI GCTCC 1 cut(s) 734
LpnPI CCDG 8 cut(s) 4, 69, 69, 239, 381, 519, 575, 681
Lsp1109I GCAGC 6 cut(s) 16, 241, 244, 562, 565, 568
LweI GCATC 3 cut(s) 47, 304, 482
MaeI CTAG 1 cut(s) 333
MaeII ACGT 1 cut(s) 545
MaeIII GTNAC 3 cut(s) 67, 188, 747
MalI GATC 4 cut(s) 164, 405, 459, 582
MboI GATC 4 cut(s) 162, 403, 457, 580
MboII GAAGA 2 cut(s) 323, 522
MfeI CAATTG 1 cut(s) 268
MhlI GDGCHC 1 cut(s) 226
MlsI TGGCCA 1 cut(s) 87
MluCI AATT 4 cut(s) 262, 268, 288, 653
MluNI TGGCCA 1 cut(s) 87
MlyI GAGTC 2 cut(s) 64, 434
Mox20I TGGCCA 1 cut(s) 87
MscI TGGCCA 1 cut(s) 87
MslI CAYNNNNRTG 1 cut(s) 620
Msp20I TGGCCA 1 cut(s) 87
MspA1I CMGCKG 1 cut(s) 7
MspI CCGG 1 cut(s) 56
MunI CAATTG 1 cut(s) 268
MwoI GCNNNNNNNGC 3 cut(s) 44, 115, 556
NdeII GATC 4 cut(s) 162, 403, 457, 580
NlaIII CATG 3 cut(s) 35, 92, 404
NlaIV GGNNCC 5 cut(s) 54, 117, 223, 631, 736
NmuCI GTSAC 2 cut(s) 67, 188
NspV TTCGAA 1 cut(s) 678
PagI TCATGA 2 cut(s) 31, 400
PfeI GAWTC 1 cut(s) 238
PkrI GCNGC 7 cut(s) 6, 231, 234, 552, 555, 558, 634
PleI GAGTC 2 cut(s) 64, 433
PpsI GAGTC 2 cut(s) 64, 433
PspFI CCCAGC 1 cut(s) 225
PspN4I GGNNCC 5 cut(s) 54, 117, 223, 631, 736
PspPI GGNCC 1 cut(s) 116
PstNI CAGNNNCTG 2 cut(s) 83, 562
PvuII CAGCTG 1 cut(s) 7
RsaI GTAC 2 cut(s) 274, 723
RsaNI GTAC 2 cut(s) 273, 722
RseI CAYNNNNRTG 1 cut(s) 620
SalI GTCGAC 1 cut(s) 427
SatI GCNGC 7 cut(s) 5, 230, 233, 551, 554, 557, 633
Sau3AI GATC 4 cut(s) 162, 403, 457, 580
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 2 cut(s) 64, 434
SduI GDGCHC 1 cut(s) 226
SetI ASST 6 cut(s) 9, 214, 548, 564, 706, 727
SfaNI GCATC 3 cut(s) 47, 304, 482
SfuI TTCGAA 1 cut(s) 678
SmiMI CAYNNNNRTG 1 cut(s) 620
SmlI CTYRAG 1 cut(s) 570
SmoI CTYRAG 1 cut(s) 570
SpeI ACTAGT 1 cut(s) 332
Sse9I AATT 4 cut(s) 262, 268, 288, 653
SsiI CCGC 1 cut(s) 633
SspMI CTAG 1 cut(s) 333
TaaI ACNGT 4 cut(s) 389, 441, 717, 743
TaiI ACGT 1 cut(s) 548
TaqI TCGA 2 cut(s) 428, 678
TasI AATT 4 cut(s) 262, 268, 288, 653
TatI WGTACW 1 cut(s) 272
TauI GCSGC 1 cut(s) 635
TfiI GAWTC 1 cut(s) 238
TscAI CASTG 1 cut(s) 748
TseFI GTSAC 2 cut(s) 67, 188
TseI GCWGC 6 cut(s) 4, 229, 232, 550, 553, 556
Tsp45I GTSAC 2 cut(s) 67, 188
TspDTI ATGAA 3 cut(s) 318, 522, 666
TspRI CASTG 1 cut(s) 748
XapI RAATTY 1 cut(s) 653
XmiI GTMKAC 2 cut(s) 363, 428
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.