RLG00000009868

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0013683
Physical Location & Seq
Reverse (-)
59196172 .. 59196735
564 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009868

Sequence Viewer

Length: 405 bp
ATGATGGGAAATCCGATTGTTTTGGATAACGTCTTGACTGAGATCAAAGCTGCGGGCTGTGTGCAGCTGCCTGGTTTTAGGGGAGAGGTTAATGAGGCATCATTGGCTTTGGTTCCAGCTTCTGTAGTGACTTGGAAAGAGGTTGGCCCTGTGAAGATTTCCTATCCACCAGTGGGGCCAGTGGGGAGGAAAAGAAAGTCTGTCACCAAGTTGGATCGTTTTGGGGAAAAATATTTGGCTTTTCCTGATCCTACACTTGAGGTTGAGGATAATGTCTCGCTGATTCTGCAACACAAGAATGATTCTATCCCTGAAAGGGTTGGTCAACAGGTGTTTGTGCTGGAGGGGGAGCATGAGACTGCTCATGCGTTGGAGTCTACTGATGTGGAGGAATCGATGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.67

Weight (kDa)

4.88

Isoelectric Point (pI)

29.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 377
AciI CCGC 1 cut(s) 53
AclWI GGATC 2 cut(s) 222, 242
AfiI CCNNNNNNNGG 2 cut(s) 173, 316
AjnI CCWGG 1 cut(s) 70
AluBI AGCT 3 cut(s) 50, 67, 119
AluI AGCT 3 cut(s) 50, 67, 119
Alw26I GTCTC 2 cut(s) 280, 350
AlwI GGATC 2 cut(s) 222, 242
AlwNI CAGNNNCTG 1 cut(s) 122
AoxI GGCC 2 cut(s) 145, 176
ApeKI GCWGC 3 cut(s) 50, 64, 67
AspS9I GGNCC 2 cut(s) 146, 176
AsuHPI GGTGA 1 cut(s) 196
BbvI GCAGC 3 cut(s) 37, 54, 76
BccI CCATC 1 cut(s) 391
BciT130I CCWGG 1 cut(s) 72
BcoDI GTCTC 2 cut(s) 280, 350
BfmI CTRYAG 1 cut(s) 123
BisI GCNGC 3 cut(s) 51, 65, 68
BlsI GCNGC 3 cut(s) 52, 66, 69
Bme1390I CCNGG 1 cut(s) 72
BmgT120I GGNCC 2 cut(s) 146, 176
BmiI GGNNCC 2 cut(s) 114, 177
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 107
BpmI CTGGAG 1 cut(s) 362
BpuEI CTTGAG 1 cut(s) 278
Bsa29I ATCGAT 1 cut(s) 395
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 316
Bse1I ACTGG 2 cut(s) 170, 179
BseBI CCWGG 1 cut(s) 72
BseCI ATCGAT 1 cut(s) 395
BseLI CCNNNNNNNGG 2 cut(s) 173, 316
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 2 cut(s) 170, 179
BseXI GCAGC 3 cut(s) 37, 54, 76
BsgI GTGCAG 1 cut(s) 83
BshFI GGCC 2 cut(s) 147, 178
BshVI ATCGAT 1 cut(s) 395
BslI CCNNNNNNNGG 2 cut(s) 173, 316
BsmAI GTCTC 2 cut(s) 280, 350
BsnI GGCC 2 cut(s) 147, 178
Bsp143I GATC 3 cut(s) 42, 214, 247
BspACI CCGC 1 cut(s) 53
BspANI GGCC 2 cut(s) 147, 178
BspCNI CTCAG 1 cut(s) 31
BspDI ATCGAT 1 cut(s) 395
BspLI GGNNCC 2 cut(s) 114, 177
BspPI GGATC 2 cut(s) 222, 242
BsrI ACTGG 2 cut(s) 170, 179
BssMI GATC 3 cut(s) 42, 214, 247
Bst2UI CCWGG 1 cut(s) 72
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 1 cut(s) 39
BstKTI GATC 3 cut(s) 45, 217, 250
BstMAI GTCTC 2 cut(s) 280, 350
BstMBI GATC 3 cut(s) 42, 214, 247
BstMWI GCNNNNNNNGC 2 cut(s) 104, 286
BstNI CCWGG 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 70
BstSFI CTRYAG 1 cut(s) 123
BstV1I GCAGC 3 cut(s) 37, 54, 76
Bsu15I ATCGAT 1 cut(s) 395
BsuRI GGCC 2 cut(s) 147, 178
BsuTUI ATCGAT 1 cut(s) 395
BtsIMutI CAGTG 2 cut(s) 177, 186
Cac8I GCNNGC 1 cut(s) 55
CaiI CAGNNNCTG 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 146, 176
ClaI ATCGAT 1 cut(s) 395
CviAII CATG 2 cut(s) 353, 365
CviJI RGCY 8 cut(s) 50, 57, 67, 107, 119, 147, 178, 239
CviKI_1 RGCY 8 cut(s) 50, 57, 67, 107, 119, 147, 178, 239
DdeI CTNAG 1 cut(s) 39
DpnI GATC 3 cut(s) 44, 216, 249
DpnII GATC 3 cut(s) 42, 214, 247
EcoRII CCWGG 1 cut(s) 70
FaeI CATG 2 cut(s) 356, 368
FaiI YATR 2 cut(s) 354, 366
FatI CATG 2 cut(s) 352, 364
FauI CCCGC 1 cut(s) 46
FblI GTMKAC 1 cut(s) 377
Fnu4HI GCNGC 3 cut(s) 51, 65, 68
Fsp4HI GCNGC 3 cut(s) 51, 65, 68
GluI GCNGC 3 cut(s) 51, 65, 68
GsuI CTGGAG 1 cut(s) 362
HaeIII GGCC 2 cut(s) 147, 178
Hin1II CATG 2 cut(s) 356, 368
HincII GTYRAC 1 cut(s) 326
HindII GTYRAC 1 cut(s) 326
HinfI GANTC 4 cut(s) 283, 302, 374, 392
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 2 cut(s) 326, 378
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 2 cut(s) 34, 245
Hpy8I GTNNAC 2 cut(s) 326, 378
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 2 cut(s) 64, 289
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 286
HpyF3I CTNAG 1 cut(s) 39
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 2 cut(s) 356, 368
Kzo9I GATC 3 cut(s) 42, 214, 247
LmnI GCTCC 1 cut(s) 349
Lsp1109I GCAGC 3 cut(s) 37, 54, 76
LweI GCATC 1 cut(s) 107
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 2 cut(s) 127, 202
MalI GATC 3 cut(s) 44, 216, 249
MboI GATC 3 cut(s) 42, 214, 247
MboII GAAGA 1 cut(s) 166
MlyI GAGTC 1 cut(s) 383
MmeI TCCRAC 2 cut(s) 192, 351
MnlI CCTC 8 cut(s) 79, 88, 133, 180, 253, 259, 337, 382
MseI TTAA 1 cut(s) 90
MslI CAYNNNNRTG 1 cut(s) 297
MspA1I CMGCKG 1 cut(s) 67
MspR9I CCNGG 1 cut(s) 72
MvaI CCWGG 1 cut(s) 72
MwoI GCNNNNNNNGC 2 cut(s) 104, 286
NdeII GATC 3 cut(s) 42, 214, 247
NlaIII CATG 2 cut(s) 356, 368
NlaIV GGNNCC 2 cut(s) 114, 177
NmuCI GTSAC 2 cut(s) 127, 202
PfeI GAWTC 3 cut(s) 283, 302, 392
PkrI GCNGC 3 cut(s) 52, 66, 69
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
PspN4I GGNNCC 2 cut(s) 114, 177
PspPI GGNCC 2 cut(s) 146, 176
PstNI CAGNNNCTG 1 cut(s) 122
PvuII CAGCTG 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 297
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 3 cut(s) 51, 65, 68
Sau3AI GATC 3 cut(s) 42, 214, 247
Sau96I GGNCC 2 cut(s) 146, 176
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 1 cut(s) 72
SetI ASST 8 cut(s) 33, 52, 69, 90, 121, 144, 264, 333
SfaNI GCATC 1 cut(s) 107
SfcI CTRYAG 1 cut(s) 123
SmiMI CAYNNNNRTG 1 cut(s) 297
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
SsiI CCGC 1 cut(s) 53
SspI AATATT 1 cut(s) 233
StyD4I CCNGG 1 cut(s) 70
TaiI ACGT 1 cut(s) 33
TaqI TCGA 1 cut(s) 395
TfiI GAWTC 3 cut(s) 283, 302, 392
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 2 cut(s) 177, 186
TseFI GTSAC 2 cut(s) 127, 202
TseI GCWGC 3 cut(s) 50, 64, 67
Tsp45I GTSAC 2 cut(s) 127, 202
TspRI CASTG 2 cut(s) 177, 186
XmiI GTMKAC 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.