Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003722

Physical Location & Seq

Genomic Coordinates Reverse (-)

23480152 .. 23486560

Gene Structure 6409 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g32540.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGGGAGAGGAAAGATTGAGATAAAGAGGATTGAGAACACCACAAACCGTCAAGTGACCTTCTGCAAGAGAAGAAATGGACTGTTGAAGAAAGCTTATGAGCTCTCCATTCTGTGTGAGGCTGAAGTTGCCCTCATTGTCTTCTCTAGCCGTGGCCGCCTCTATGAGTATTCCAACAACAACATAAGAAATACTATAGAGAGGTACAAGAAGGCATCTTCCGATAATTCAGGTGCAACCACTATTACAGAAATCAATGCTCAATACTACCAACAGGAATCCACAAAGCTGAGGCACCAAATTCAAATGCTGCAGAATTCTAACAGGCACTTAATGGGAGATTCTTTGAGTAATCTGACTGTGAAAGAACTTAAGCAGCTGGAAAATAGGCTTGAACGAGGCCTTACTAGAATCAGGTCCAAGAAGGTAAACATTGATGAAAAAGAATGTGAAAGTTACGAAAATGCATGCATGCATTTCACGACAAAGACCGAGCAACAACAGCATGAAATGTTGCTTGCTGAAATTGAGTACTTGCAGAAAAGGGAGATTGAGCTGGAAAACGAGAATGTATTAATTCGTGCTAAGATAGCAGAAGTTGAGAGGCTTCAGCAAGCAGACCTGGTTTCTGGGGCAGAACTGAATGCCATCCAGGCGTTAGCTTCTCGCAATTTCTTTGAGTCCACTATGATGGAGGGTGAGACTTCATACTCACAGCCAGAGAAGAAATTGCTCCATCTGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

249

Amino Acids

28.78

Weight (kDa)

8.25

Isoelectric Point (pI)

55.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	5.2e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	87 - 172	3.2e-27	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09960 AT4G09960 AT4G09960 AT4G09960 AT4G09960 AT4G09960
fragaria_vesca	FvH4_5g32540 FvH4_5g32540
malus_domestica	MD08G1216500.v1.1 MD15G1403600.v1.1
prunus_persica	Prupe.1G549600_v2.0.a1 Prupe.1G549600_v2.0.a1 Prupe.1G549600_v2.0.a1
pyrus_communis	pycom08g18740 pycom15g36090
rosa_chinensis	RchiOBHm_Chr7g0229221
rosa_laevigata	RLG00000001521
rosa_roxburghii	Rroxscaffold_3G00230530
rosa_rugosa	Rorug07G0256700 Rorug07G0256800 Rorug07G0256900 Rorug07G0256900 Rorug07G0256900 Rorug07G0256900 Rorug07G0257000 Rorug07G0257100 Rorug07G0257100 Rorug07G0257400 Rorug07G0257500 Rorug07G0257600 Rorug07G0257800
rosa_samantha	Rh7BG387100 Rh7CG426500
rosa_wichuraiana	Rw0G001920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	294
AciI	CCGC	1 cut(s)	157
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	2 cut(s)	300, 316
AcuI	CTGAAG	2 cut(s)	144, 593
AfaI	GTAC	2 cut(s)	206, 533
AflII	CTTAAG	1 cut(s)	371
AgsI	TTSAA	3 cut(s)	88, 305, 395
AjnI	CCWGG	2 cut(s)	621, 651
AluBI	AGCT	6 cut(s)	95, 103, 289, 379, 556, 662
AluI	AGCT	6 cut(s)	95, 103, 289, 379, 556, 662
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	695
AoxI	GGCC	2 cut(s)	154, 400
ApeKI	GCWGC	2 cut(s)	310, 376
ApoI	RAATTY	2 cut(s)	300, 316
AseI	ATTAAT	1 cut(s)	575
AspS9I	GGNCC	1 cut(s)	417
AsuHPI	GGTGA	1 cut(s)	710
AvaII	GGWCC	1 cut(s)	417
BanI	GGYRCC	1 cut(s)	294
BanII	GRGCYC	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	105
BbvCI	CCTCAGC	1 cut(s)	290
BbvI	GCAGC	2 cut(s)	297, 388
BccI	CCATC	3 cut(s)	656, 685, 744
BceAI	ACGGC	1 cut(s)	135
BciT130I	CCWGG	2 cut(s)	623, 653
BcoDI	GTCTC	1 cut(s)	695
BfaI	CTAG	2 cut(s)	147, 408
BfmI	CTRYAG	2 cut(s)	195, 311
BfrI	CTTAAG	1 cut(s)	371
BglI	GCCNNNNNGGC	1 cut(s)	653
BisI	GCNGC	3 cut(s)	157, 311, 377
BlsI	GCNGC	3 cut(s)	158, 312, 378
BmcAI	AGTACT	1 cut(s)	533
Bme1390I	CCNGG	2 cut(s)	623, 653
Bme18I	GGWCC	1 cut(s)	417
BmgT120I	GGNCC	1 cut(s)	417
BmiI	GGNNCC	1 cut(s)	296
BmrFI	CCNGG	2 cut(s)	623, 653
BmsI	GCATC	1 cut(s)	224
BpiI	GAAGAC	1 cut(s)	133
Bpu10I	CCTNAGC	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	151
BseBI	CCWGG	2 cut(s)	623, 653
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	1 cut(s)	648
BseMII	CTCAG	1 cut(s)	281
BseXI	GCAGC	2 cut(s)	297, 388
BshFI	GGCC	2 cut(s)	156, 402
BshNI	GGYRCC	1 cut(s)	294
BsiHKAI	GWGCWC	1 cut(s)	105
BsmAI	GTCTC	1 cut(s)	695
BsmI	GAATGC	1 cut(s)	649
BsnI	GGCC	2 cut(s)	156, 402
Bsp1286I	GDGCHC	1 cut(s)	105
BspACI	CCGC	1 cut(s)	157
BspANI	GGCC	2 cut(s)	156, 402
BspCNI	CTCAG	1 cut(s)	282
BspLI	GGNNCC	1 cut(s)	296
BspMAI	CTGCAG	1 cut(s)	315
BspT107I	GGYRCC	1 cut(s)	294
BspTI	CTTAAG	1 cut(s)	371
BssECI	CCNNGG	1 cut(s)	151
Bst2UI	CCWGG	2 cut(s)	623, 653
Bst4CI	ACNGT	3 cut(s)	50, 84, 361
BstAFI	CTTAAG	1 cut(s)	371
BstC8I	GCNNGC	4 cut(s)	469, 473, 519, 615
BstDEI	CTNAG	2 cut(s)	290, 585
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	1 cut(s)	648
BstMAI	GTCTC	1 cut(s)	695
BstMWI	GCNNNNNNNGC	5 cut(s)	128, 156, 502, 590, 653
BstNI	CCWGG	2 cut(s)	623, 653
BstNSI	RCATGY	2 cut(s)	471, 475
BstSCI	CCNGG	2 cut(s)	621, 651
BstSFI	CTRYAG	2 cut(s)	195, 311
BstV1I	GCAGC	2 cut(s)	297, 388
BstV2I	GAAGAC	1 cut(s)	133
BstXI	CCANNNNNNTGG	1 cut(s)	691
BsuRI	GGCC	2 cut(s)	156, 402
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	648
Cac8I	GCNNGC	4 cut(s)	469, 473, 519, 615
Cfr13I	GGNCC	1 cut(s)	417
CsiI	ACCWGGT	1 cut(s)	621
Csp6I	GTAC	2 cut(s)	205, 532
CviAII	CATG	3 cut(s)	468, 472, 506
CviQI	GTAC	2 cut(s)	205, 532
DdeI	CTNAG	2 cut(s)	290, 585
EaeI	YGGCCR	1 cut(s)	154
Ecl136II	GAGCTC	1 cut(s)	103
Eco147I	AGGCCT	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	417
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	2 cut(s)	144, 593
EcoICRI	GAGCTC	1 cut(s)	103
EcoRI	GAATTC	1 cut(s)	316
EcoRII	CCWGG	2 cut(s)	621, 651
EcoT22I	ATGCAT	3 cut(s)	469, 473, 477
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	3 cut(s)	471, 475, 509
FaiI	YATR	9 cut(s)	99, 165, 185, 197, 469, 473, 507, 689, 709
FatI	CATG	3 cut(s)	467, 471, 505
Fnu4HI	GCNGC	3 cut(s)	157, 311, 377
FokI	GGATG	1 cut(s)	635
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	3 cut(s)	157, 311, 377
FspBI	CTAG	2 cut(s)	147, 408
GluI	GCNGC	3 cut(s)	157, 311, 377
HaeIII	GGCC	2 cut(s)	156, 402
Hin1II	CATG	3 cut(s)	471, 475, 509
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	4 cut(s)	278, 341, 411, 680
HphI	GGTGA	1 cut(s)	710
Hpy166II	GTNNAC	2 cut(s)	430, 684
Hpy188I	TCNGA	2 cut(s)	223, 357
Hpy188III	TCNNGA	1 cut(s)	481
Hpy8I	GTNNAC	2 cut(s)	430, 684
HpyAV	CCTTC	3 cut(s)	70, 205, 418
HpyCH4III	ACNGT	3 cut(s)	50, 84, 361
HpyCH4V	TGCA	7 cut(s)	66, 236, 313, 467, 471, 475, 538
HpyF10VI	GCNNNNNNNGC	5 cut(s)	128, 156, 502, 590, 653
HpyF3I	CTNAG	2 cut(s)	290, 585
Hsp92II	CATG	3 cut(s)	471, 475, 509
LmnI	GCTCC	1 cut(s)	738
Lsp1109I	GCAGC	2 cut(s)	297, 388
LweI	GCATC	1 cut(s)	224
MabI	ACCWGGT	1 cut(s)	621
MaeI	CTAG	2 cut(s)	147, 408
MaeIII	GTNAC	2 cut(s)	55, 455
MboII	GAAGA	5 cut(s)	84, 100, 133, 210, 736
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	7 cut(s)	226, 300, 316, 525, 576, 670, 728
MlyI	GAGTC	1 cut(s)	689
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	9 cut(s)	21, 112, 143, 170, 195, 285, 392, 597, 688
Mph1103I	ATGCAT	3 cut(s)	469, 473, 477
MseI	TTAA	3 cut(s)	332, 372, 575
MslI	CAYNNNNRTG	1 cut(s)	689
MspA1I	CMGCKG	1 cut(s)	379
MspCI	CTTAAG	1 cut(s)	371
MspR9I	CCNGG	2 cut(s)	623, 653
Mva1269I	GAATGC	1 cut(s)	649
MvaI	CCWGG	2 cut(s)	623, 653
MwoI	GCNNNNNNNGC	5 cut(s)	128, 156, 502, 590, 653
NlaIII	CATG	3 cut(s)	471, 475, 509
NlaIV	GGNNCC	1 cut(s)	296
NmuCI	GTSAC	1 cut(s)	55
NsiI	ATGCAT	3 cut(s)	469, 473, 477
NspI	RCATGY	2 cut(s)	471, 475
PaeI	GCATGC	2 cut(s)	471, 475
PceI	AGGCCT	1 cut(s)	402
PctI	GAATGC	1 cut(s)	649
PfeI	GAWTC	3 cut(s)	278, 341, 411
PkrI	GCNGC	3 cut(s)	158, 312, 378
PleI	GAGTC	1 cut(s)	688
PpsI	GAGTC	1 cut(s)	688
PshBI	ATTAAT	1 cut(s)	575
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	2 cut(s)	621, 651
PspGI	CCWGG	2 cut(s)	621, 651
PspN4I	GGNNCC	1 cut(s)	296
PspPI	GGNCC	1 cut(s)	417
PstI	CTGCAG	1 cut(s)	315
PvuII	CAGCTG	1 cut(s)	379
RsaI	GTAC	2 cut(s)	206, 533
RsaNI	GTAC	2 cut(s)	205, 532
RseI	CAYNNNNRTG	1 cut(s)	689
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	3 cut(s)	332, 372, 575
SatI	GCNGC	3 cut(s)	157, 311, 377
Sau96I	GGNCC	1 cut(s)	417
ScaI	AGTACT	1 cut(s)	533
SchI	GAGTC	1 cut(s)	689
ScrFI	CCNGG	2 cut(s)	623, 653
SduI	GDGCHC	1 cut(s)	105
SexAI	ACCWGGT	1 cut(s)	621
SfaNI	GCATC	1 cut(s)	224
SfcI	CTRYAG	2 cut(s)	195, 311
SinI	GGWCC	1 cut(s)	417
SmiMI	CAYNNNNRTG	1 cut(s)	689
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
SphI	GCATGC	2 cut(s)	471, 475
Sse9I	AATT	7 cut(s)	226, 300, 316, 525, 576, 670, 728
SseBI	AGGCCT	1 cut(s)	402
SsiI	CCGC	1 cut(s)	157
SspMI	CTAG	2 cut(s)	147, 408
SstI	GAGCTC	1 cut(s)	105
StuI	AGGCCT	1 cut(s)	402
StyD4I	CCNGG	2 cut(s)	621, 651
TaaI	ACNGT	3 cut(s)	50, 84, 361
TaqII	GACCGA	1 cut(s)	506
TasI	AATT	7 cut(s)	226, 300, 316, 525, 576, 670, 728
TatI	WGTACW	1 cut(s)	531
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	3 cut(s)	278, 341, 411
Tru1I	TTAA	3 cut(s)	332, 372, 575
Tru9I	TTAA	3 cut(s)	332, 372, 575
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	310, 376
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	453, 522, 696
Vha464I	CTTAAG	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	417
VspI	ATTAAT	1 cut(s)	575
XapI	RAATTY	2 cut(s)	300, 316
XceI	RCATGY	2 cut(s)	471, 475
XspI	CTAG	2 cut(s)	147, 408
ZrmI	AGTACT	1 cut(s)	533
Zsp2I	ATGCAT	3 cut(s)	469, 473, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.