Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003722

Physical Location & Seq

Genomic Coordinates Forward (+)

24051088 .. 24056368

Gene Structure 5281 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0257000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGGGGTGCATGTGCTCTACCTTGGCTGCCAAGTTCGCCTTCTTCCCTCCATCTCCTCCCACCTACAAGATCCACAACCGGGAAAACGACGGCAAGCTCAGCGTCGTAGCCTCCGCCTCCACCTCCACGTCGTTTCCTCTCCCTCACACCGACGACAACTCCCTCGACGTTTTGCTCATTGACAACAAACGCGGCAGCAAGATTGTCGCTTTTTATCTCAGAAACCCATATGCTCGTCTCACTCTGCTTTACTCTCATGGCAATGCTGCTGACCTTGGTCAACTCTATGATCTCTTTGTCCAGCTCAAGGTCGCTCTCAGGGTCAATCTCATTGGATATGACTATTCTGGCTATGGAGCCTCTACTGGCAAGCCAAGTGAGGAAAACACATATGCTGACATAGAGGCAGTATATGAGTGCCTTGAGACCGAATATGGAGTTAGCCAGGAAGATTTGATCTTGTATGGGCAGTCAGTTGGAAGTGGACCAACACTCCACTTGGCATCTAAACTACCAAGACTAAGGGGTGTAGTTCTGCACAGTGCAATTCTCTCCGGCCTTCGTGTTGTCTGCCATGTAAAATTCACATTCTGCTTTGACATTTATAAGAACATCAATAAAATTCGGAAAGTGAAGTGCCCTGTGCTAGTGATACATGGTACAGAAGATGATATTGTGAATTGGTTACATGGCAATGGACTTTGGAAAATGGCAAGGGATCCGTATGAGCCTTTGTGGATTAAAGGAGGTGGGCACTGCAACTTGGAGCTTTACCCTGATTACATCCGCCATCTTTGCAGCCGAAATGCTCCTCTTGCTGCAAGCCGAACTGCTCCTCTTGCTGCAAGCCGAACTGCTCCTCTTGCTGGAAGCCGAACTGCTCCTCTTGCTGCAAGCCGAACTGCTTCTCTTGCTGCAAGCCGAAATGCTTCTCTTGCTGCAAGCCGAACTGCTCCTCTTGCTGCATGCCGAACTGCTCCTCTTGCTGCAAGCCGAAATGCTTCTCTTGCTGCAAGCCGAACTGCTCCTCTTGCTGCATGCCTAACTGCTTCTCTTGCTGCAAGCCGAAATGCTCCTCTTGCTGCAAGCCGAACTGCTCCTCTTGCTGCATGCCGAACTGCTTCTCTTGCTGCAAGCCGAAATGCTCCTCTTGCTGCAAGCCGAACTGCTCCTCTTGCTGCAAGCCGAACTGCTCCTCTTGCTGCATGCCGAACTGCTCCTCTTGCTGCATGCCGAACTGCTTCTCTTGCTGCAAGCCGAAATGCTTCTCTTGCTGCAAGCCGAAATGCTTCTCTTGCTGGAAGCCGAAATGCTTCTCTAGCTGCAAGCCGAAATGCTTCTCTTGCTGCAAGCCGAAATGCTTCTCTTGCTGCAAGCCGACATGCTTCTCTTGCTGGAAGCCGAGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

470

Amino Acids

49.27

Weight (kDa)

9.83

Isoelectric Point (pI)

50.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	80 - 184	8.5e-06	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	82 - 182	4.4e-06	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09960 AT4G09960 AT4G09960 AT4G09960 AT4G09960 AT4G09960
fragaria_vesca	FvH4_5g32540 FvH4_5g32540
malus_domestica	MD08G1216500.v1.1 MD15G1403600.v1.1
prunus_persica	Prupe.1G549600_v2.0.a1 Prupe.1G549600_v2.0.a1 Prupe.1G549600_v2.0.a1
pyrus_communis	pycom08g18740 pycom15g36090
rosa_chinensis	RchiOBHm_Chr7g0229221
rosa_laevigata	RLG00000001521
rosa_roxburghii	Rroxscaffold_3G00230530
rosa_rugosa	Rorug07G0256700 Rorug07G0256800 Rorug07G0256900 Rorug07G0256900 Rorug07G0256900 Rorug07G0256900 Rorug07G0257000 Rorug07G0257100 Rorug07G0257100 Rorug07G0257400 Rorug07G0257500 Rorug07G0257600 Rorug07G0257800
rosa_samantha	Rh7BG387100 Rh7CG426500
rosa_wichuraiana	Rw0G001920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	606
AccII	CGCG	1 cut(s)	192
AciI	CCGC	3 cut(s)	114, 192, 787
AclWI	GGATC	3 cut(s)	64, 713, 726
AcsI	RAATTY	2 cut(s)	581, 621
AfaI	GTAC	1 cut(s)	661
AfiI	CCNNNNNNNGG	3 cut(s)	79, 307, 866
AjiI	CACGTC	1 cut(s)	129
AjnI	CCWGG	1 cut(s)	444
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AluBI	AGCT	5 cut(s)	97, 304, 769, 1322, 1406
AluI	AGCT	5 cut(s)	97, 304, 769, 1322, 1406
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	2 cut(s)	242, 419
AlwI	GGATC	3 cut(s)	64, 713, 726
AoxI	GGCC	1 cut(s)	556
ApoI	RAATTY	2 cut(s)	581, 621
AspS9I	GGNCC	1 cut(s)	485
AsuC2I	CCSGG	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	485
BaeGI	GKGCMC	2 cut(s)	641, 756
BamHI	GGATCC	1 cut(s)	718
Bbv12I	GWGCWC	1 cut(s)	17
BccI	CCATC	2 cut(s)	58, 798
BceAI	ACGGC	1 cut(s)	106
BcgI	CGANNNNNNTGC	2 cut(s)	187, 221
BciT130I	CCWGG	1 cut(s)	446
BcnI	CCSGG	1 cut(s)	80
BcoDI	GTCTC	2 cut(s)	242, 419
BfaI	CTAG	2 cut(s)	647, 1319
BlpI	GCTNAGC	1 cut(s)	98
Bme1390I	CCNGG	2 cut(s)	80, 446
Bme18I	GGWCC	1 cut(s)	485
BmgBI	CACGTC	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	485
BmiI	GGNNCC	2 cut(s)	358, 720
BmrFI	CCNGG	2 cut(s)	80, 446
BmsI	GCATC	1 cut(s)	512
BoxI	GACNNNNGTC	1 cut(s)	276
Bpu1102I	GCTNAGC	1 cut(s)	98
BpuEI	CTTGAG	2 cut(s)	290, 443
BpuMI	CCSGG	1 cut(s)	80
BsaI	GGTCTC	1 cut(s)	419
BsaJI	CCNNGG	2 cut(s)	21, 274
BsaXI	ACNNNNNCTCC	4 cut(s)	143, 173, 477, 507
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 307, 866
Bse1I	ACTGG	1 cut(s)	370
Bse3DI	GCAATG	2 cut(s)	268, 700
BseBI	CCWGG	1 cut(s)	446
BseDI	CCNNGG	2 cut(s)	21, 274
BseGI	GGATG	1 cut(s)	783
BseLI	CCNNNNNNNGG	3 cut(s)	79, 307, 866
BseMI	GCAATG	2 cut(s)	268, 700
BseMII	CTCAG	3 cut(s)	112, 232, 331
BseNI	ACTGG	1 cut(s)	370
BseSI	GKGCMC	2 cut(s)	641, 756
BsgI	GTGCAG	1 cut(s)	521
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	1 cut(s)	558
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	2 cut(s)	79, 555
BslI	CCNNNNNNNGG	3 cut(s)	79, 307, 866
BsmAI	GTCTC	2 cut(s)	242, 419
BsmBI	CGTCTC	1 cut(s)	242
BsnI	GGCC	1 cut(s)	558
Bso31I	GGTCTC	1 cut(s)	419
Bsp1286I	GDGCHC	3 cut(s)	17, 641, 756
Bsp143I	GATC	4 cut(s)	69, 289, 456, 718
Bsp1720I	GCTNAGC	1 cut(s)	98
BspACI	CCGC	3 cut(s)	114, 192, 787
BspANI	GGCC	1 cut(s)	558
BspCNI	CTCAG	3 cut(s)	111, 231, 330
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	2 cut(s)	358, 720
BspPI	GGATC	3 cut(s)	64, 713, 726
BspTNI	GGTCTC	1 cut(s)	419
BsrDI	GCAATG	2 cut(s)	268, 700
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	2 cut(s)	21, 274
BssMI	GATC	4 cut(s)	69, 289, 456, 718
BssT1I	CCWWGG	2 cut(s)	21, 274
Bst2UI	CCWGG	1 cut(s)	446
Bst4CI	ACNGT	1 cut(s)	542
BstDEI	CTNAG	4 cut(s)	98, 218, 317, 521
BstF5I	GGATG	1 cut(s)	783
BstFNI	CGCG	1 cut(s)	192
BstKTI	GATC	4 cut(s)	72, 292, 459, 721
BstMAI	GTCTC	2 cut(s)	242, 419
BstMBI	GATC	4 cut(s)	69, 289, 456, 718
BstNI	CCWGG	1 cut(s)	446
BstNSI	RCATGY	7 cut(s)	13, 969, 1041, 1113, 1209, 1233, 1385
BstPAI	GACNNNNGTC	1 cut(s)	276
BstSCI	CCNGG	2 cut(s)	78, 444
BstSLI	GKGCMC	2 cut(s)	641, 756
BstUI	CGCG	1 cut(s)	192
BstX2I	RGATCY	2 cut(s)	69, 718
BstYI	RGATCY	2 cut(s)	69, 718
BsuRI	GGCC	1 cut(s)	558
BtrI	CACGTC	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	783
BtsI	GCAGTG	1 cut(s)	754
BtsIMutI	CAGTG	2 cut(s)	547, 754
Cfr13I	GGNCC	1 cut(s)	485
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	660
CviQI	GTAC	1 cut(s)	660
DdeI	CTNAG	4 cut(s)	98, 218, 317, 521
DpnI	GATC	4 cut(s)	71, 291, 458, 720
DpnII	GATC	4 cut(s)	69, 289, 456, 718
EciI	GGCGGA	2 cut(s)	103, 776
Eco130I	CCWWGG	2 cut(s)	21, 274
Eco31I	GGTCTC	1 cut(s)	419
Eco47I	GGWCC	1 cut(s)	485
EcoRII	CCWGG	1 cut(s)	444
EcoT14I	CCWWGG	2 cut(s)	21, 274
ErhI	CCWWGG	2 cut(s)	21, 274
Esp3I	CGTCTC	1 cut(s)	242
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FauNDI	CATATG	2 cut(s)	229, 391
FokI	GGATG	1 cut(s)	770
FspBI	CTAG	2 cut(s)	647, 1319
HaeIII	GGCC	1 cut(s)	558
HapII	CCGG	2 cut(s)	79, 555
HgaI	GACGC	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	281
HindII	GTYRAC	1 cut(s)	281
HpaII	CCGG	2 cut(s)	79, 555
Hpy166II	GTNNAC	2 cut(s)	281, 485
Hpy188I	TCNGA	2 cut(s)	221, 627
Hpy8I	GTNNAC	2 cut(s)	281, 485
Hpy99I	CGWCG	5 cut(s)	92, 107, 133, 155, 170
HpyAV	CCTTC	2 cut(s)	49, 569
HpyCH4III	ACNGT	1 cut(s)	542
HpyCH4IV	ACGT	2 cut(s)	128, 168
HpyF3I	CTNAG	4 cut(s)	98, 218, 317, 521
HpySE526I	ACGT	2 cut(s)	128, 168
Kzo9I	GATC	4 cut(s)	69, 289, 456, 718
LweI	GCATC	1 cut(s)	512
MaeI	CTAG	2 cut(s)	647, 1319
MaeII	ACGT	2 cut(s)	128, 168
MaeIII	GTNAC	1 cut(s)	684
MalI	GATC	4 cut(s)	71, 291, 458, 720
MboI	GATC	4 cut(s)	69, 289, 456, 718
MboII	GAAGA	3 cut(s)	34, 461, 677
MflI	RGATCY	2 cut(s)	69, 718
MhlI	GDGCHC	3 cut(s)	17, 641, 756
MluCI	AATT	4 cut(s)	546, 581, 621, 679
MmeI	TCCRAC	1 cut(s)	457
MseI	TTAA	1 cut(s)	741
MslI	CAYNNNNRTG	2 cut(s)	261, 693
MspI	CCGG	2 cut(s)	79, 555
MspR9I	CCNGG	2 cut(s)	80, 446
MvaI	CCWGG	1 cut(s)	446
MvnI	CGCG	1 cut(s)	192
NciI	CCSGG	1 cut(s)	80
NdeI	CATATG	2 cut(s)	229, 391
NdeII	GATC	4 cut(s)	69, 289, 456, 718
NlaIV	GGNNCC	2 cut(s)	358, 720
NspI	RCATGY	7 cut(s)	13, 969, 1041, 1113, 1209, 1233, 1385
PaeI	GCATGC	5 cut(s)	969, 1041, 1113, 1209, 1233
PshAI	GACNNNNGTC	1 cut(s)	276
PsiI	TTATAA	1 cut(s)	606
Psp6I	CCWGG	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	2 cut(s)	358, 720
PspPI	GGNCC	1 cut(s)	485
PsuI	RGATCY	2 cut(s)	69, 718
RsaI	GTAC	1 cut(s)	661
RsaNI	GTAC	1 cut(s)	660
RseI	CAYNNNNRTG	2 cut(s)	261, 693
SaqAI	TTAA	1 cut(s)	741
Sau3AI	GATC	4 cut(s)	69, 289, 456, 718
Sau96I	GGNCC	1 cut(s)	485
ScrFI	CCNGG	2 cut(s)	80, 446
SduI	GDGCHC	3 cut(s)	17, 641, 756
SfaNI	GCATC	1 cut(s)	512
SinI	GGWCC	1 cut(s)	485
SmiMI	CAYNNNNRTG	2 cut(s)	261, 693
SmlI	CTYRAG	2 cut(s)	305, 422
SmoI	CTYRAG	2 cut(s)	305, 422
SphI	GCATGC	5 cut(s)	969, 1041, 1113, 1209, 1233
Sse9I	AATT	4 cut(s)	546, 581, 621, 679
SsiI	CCGC	3 cut(s)	114, 192, 787
SspMI	CTAG	2 cut(s)	647, 1319
StyD4I	CCNGG	2 cut(s)	78, 444
StyI	CCWWGG	2 cut(s)	21, 274
TaaI	ACNGT	1 cut(s)	542
TaiI	ACGT	2 cut(s)	131, 171
TaqI	TCGA	1 cut(s)	165
TaqII	GACCGA	1 cut(s)	443
TasI	AATT	4 cut(s)	546, 581, 621, 679
TauI	GCSGC	1 cut(s)	195
Tru1I	TTAA	1 cut(s)	741
Tru9I	TTAA	1 cut(s)	741
TscAI	CASTG	2 cut(s)	547, 761
TspGWI	ACGGA	1 cut(s)	711
TspRI	CASTG	2 cut(s)	547, 761
VpaK11BI	GGWCC	1 cut(s)	485
XapI	RAATTY	2 cut(s)	581, 621
XceI	RCATGY	7 cut(s)	13, 969, 1041, 1113, 1209, 1233, 1385
XspI	CTAG	2 cut(s)	647, 1319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.