Prupe.1G549600_v2.0.a1
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0003722
Physical Location & Seq
Forward (+)
44924522 .. 44931398
6877 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G549600.2

Sequence Viewer

Length: 669 bp
ATGGGGAGAGGAAAGATTGAGATCAAGAGGATCGAGAACACCACAAACCGTCAAGTGACCTTCTGCAAACGAAGAAATGGACTGCTGAAGAAAGCTTATGAGCTATCCATTCTCTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGTCGAGGCCGCCTCTACGAGTACTCCAACAACAACAGCATAAGAAACACTATAGAGAGGTACAAGAAGGCTTGCTCAGATAGCTCAGGTTCAACCTCCATTACTGAAATTAATGCTCAATATTATCAACAGGAATCGGCAAAGCTGAGGCAACAGATTCAAATGCTGCAGAATTCCAACAGGCACTTAATGGGAGATGCCTTGAGTACTTTGAGTGTGAAAGAGCTAAAGCAGCTGGAGAATAGGCTTGAACGAGGCATTAATAGAATCAGGTCCAAGAAGCATGAAATGCTGCTTGCAGAAATTGAGTACTTGCAGAAAAAGGAGATCGAGCTGGAAAACGAAAATGTGTGTCTTCGAACTAAGATTTCAGAAGTTGAGAGGCTTCAACAAGCAAACATGGTTGGGCCAGAGCTGAATGCAATCCAGGCATTAGCTTCTCGCAATTTCTTTAGCCAAAATATGATGGAGGGTGGAGCAACCTACCCACAGCAAGACAAGAAGATTCTCCATCTTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

223

Amino Acids

25.61

Weight (kDa)

9.41

Isoelectric Point (pI)

53.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 157
AclWI GGATC 1 cut(s) 38
AcsI RAATTY 1 cut(s) 319
AcuI CTGAAG 2 cut(s) 107, 144
AfaI GTAC 4 cut(s) 170, 209, 355, 458
AgsI TTSAA 4 cut(s) 240, 308, 398, 536
AjnI CCWGG 1 cut(s) 573
AluBI AGCT 9 cut(s) 95, 103, 231, 292, 373, 382, 481, 562, 584
AluI AGCT 9 cut(s) 95, 103, 231, 292, 373, 382, 481, 562, 584
AlwI GGATC 1 cut(s) 38
AoxI GGCC 2 cut(s) 154, 554
ApeKI GCWGC 3 cut(s) 313, 379, 439
ApoI RAATTY 1 cut(s) 319
AseI ATTAAT 2 cut(s) 258, 408
AspS9I GGNCC 2 cut(s) 420, 554
AsuII TTCGAA 1 cut(s) 505
AvaII GGWCC 1 cut(s) 420
BbsI GAAGAC 2 cut(s) 133, 494
BbvCI CCTCAGC 1 cut(s) 293
BbvI GCAGC 3 cut(s) 300, 391, 426
BccI CCATC 2 cut(s) 607, 666
BciT130I CCWGG 1 cut(s) 575
BfmI CTRYAG 2 cut(s) 198, 314
BisI GCNGC 4 cut(s) 157, 314, 380, 440
BlsI GCNGC 4 cut(s) 158, 315, 381, 441
BmcAI AGTACT 3 cut(s) 170, 355, 458
Bme1390I CCNGG 1 cut(s) 575
Bme18I GGWCC 1 cut(s) 420
BmgT120I GGNCC 2 cut(s) 420, 554
BmrFI CCNGG 1 cut(s) 575
BmsI GCATC 2 cut(s) 109, 334
BpiI GAAGAC 2 cut(s) 133, 494
BplI GAGNNNNNCTC 2 cut(s) 144, 176
BpmI CTGGAG 2 cut(s) 130, 404
Bpu10I CCTNAGC 2 cut(s) 232, 293
Bpu14I TTCGAA 1 cut(s) 505
BpuEI CTTGAG 1 cut(s) 370
BsaBI GATNNNNATC 1 cut(s) 20
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bse1I ACTGG 1 cut(s) 147
Bse8I GATNNNNATC 1 cut(s) 20
BseBI CCWGG 1 cut(s) 575
BseJI GATNNNNATC 1 cut(s) 20
BseMII CTCAG 3 cut(s) 237, 246, 284
BseNI ACTGG 1 cut(s) 147
BseXI GCAGC 3 cut(s) 300, 391, 426
BshFI GGCC 2 cut(s) 156, 556
BsmI GAATGC 1 cut(s) 571
BsnI GGCC 2 cut(s) 156, 556
Bsp119I TTCGAA 1 cut(s) 505
Bsp143I GATC 3 cut(s) 21, 30, 474
BspACI CCGC 1 cut(s) 157
BspANI GGCC 2 cut(s) 156, 556
BspCNI CTCAG 3 cut(s) 236, 245, 285
BspMAI CTGCAG 1 cut(s) 318
BspPI GGATC 1 cut(s) 38
BspT104I TTCGAA 1 cut(s) 505
BsrI ACTGG 1 cut(s) 147
BssMI GATC 3 cut(s) 21, 30, 474
Bst2UI CCWGG 1 cut(s) 575
Bst4CI ACNGT 1 cut(s) 50
BstAPI GCANNNNNTGC 1 cut(s) 436
BstBI TTCGAA 1 cut(s) 505
BstC8I GCNNGC 2 cut(s) 220, 444
BstDEI CTNAG 4 cut(s) 223, 232, 293, 510
BstKTI GATC 3 cut(s) 24, 33, 477
BstMBI GATC 3 cut(s) 21, 30, 474
BstMWI GCNNNNNNNGC 5 cut(s) 128, 228, 379, 436, 575
BstNI CCWGG 1 cut(s) 575
BstSCI CCNGG 1 cut(s) 573
BstSFI CTRYAG 2 cut(s) 198, 314
BstV1I GCAGC 3 cut(s) 300, 391, 426
BstV2I GAAGAC 2 cut(s) 133, 494
BsuRI GGCC 2 cut(s) 156, 556
Cac8I GCNNGC 2 cut(s) 220, 444
Cfr13I GGNCC 2 cut(s) 420, 554
Csp6I GTAC 4 cut(s) 169, 208, 354, 457
CviAII CATG 2 cut(s) 431, 547
CviQI GTAC 4 cut(s) 169, 208, 354, 457
DdeI CTNAG 4 cut(s) 223, 232, 293, 510
DpnI GATC 3 cut(s) 23, 32, 476
DpnII GATC 3 cut(s) 21, 30, 474
Eco47I GGWCC 1 cut(s) 420
Eco57I CTGAAG 2 cut(s) 107, 144
EcoRI GAATTC 1 cut(s) 319
EcoRII CCWGG 1 cut(s) 573
FaeI CATG 2 cut(s) 434, 550
FaiI YATR 6 cut(s) 99, 188, 200, 432, 548, 611
FatI CATG 2 cut(s) 430, 546
Fnu4HI GCNGC 4 cut(s) 157, 314, 380, 440
Fsp4HI GCNGC 4 cut(s) 157, 314, 380, 440
GluI GCNGC 4 cut(s) 157, 314, 380, 440
GsuI CTGGAG 2 cut(s) 130, 404
HaeIII GGCC 2 cut(s) 156, 556
Hin1II CATG 2 cut(s) 434, 550
HindIII AAGCTT 1 cut(s) 93
HinfI GANTC 4 cut(s) 281, 304, 414, 652
Hpy188I TCNGA 2 cut(s) 226, 520
Hpy188III TCNNGA 2 cut(s) 25, 34
HpyAV CCTTC 2 cut(s) 70, 208
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4V TGCA 5 cut(s) 66, 316, 446, 463, 569
HpyF10VI GCNNNNNNNGC 5 cut(s) 128, 228, 379, 436, 575
HpyF3I CTNAG 4 cut(s) 223, 232, 293, 510
Hsp92II CATG 2 cut(s) 434, 550
Kzo9I GATC 3 cut(s) 21, 30, 474
LmnI GCTCC 1 cut(s) 623
Lsp1109I GCAGC 3 cut(s) 300, 391, 426
LweI GCATC 2 cut(s) 109, 334
MaeIII GTNAC 1 cut(s) 55
MalI GATC 3 cut(s) 23, 32, 476
MboI GATC 3 cut(s) 21, 30, 474
MboII GAAGA 5 cut(s) 84, 100, 133, 494, 661
MluCI AATT 4 cut(s) 255, 319, 450, 592
MmeI TCCRAC 2 cut(s) 198, 348
MseI TTAA 3 cut(s) 258, 335, 408
MspA1I CMGCKG 1 cut(s) 382
MspR9I CCNGG 1 cut(s) 575
Mva1269I GAATGC 1 cut(s) 571
MvaI CCWGG 1 cut(s) 575
MwoI GCNNNNNNNGC 5 cut(s) 128, 228, 379, 436, 575
NdeII GATC 3 cut(s) 21, 30, 474
NlaIII CATG 2 cut(s) 434, 550
NmuCI GTSAC 1 cut(s) 55
NspV TTCGAA 1 cut(s) 505
PctI GAATGC 1 cut(s) 571
PfeI GAWTC 4 cut(s) 281, 304, 414, 652
PkrI GCNGC 4 cut(s) 158, 315, 381, 441
PshBI ATTAAT 2 cut(s) 258, 408
Psp6I CCWGG 1 cut(s) 573
PspGI CCWGG 1 cut(s) 573
PspPI GGNCC 2 cut(s) 420, 554
PstI CTGCAG 1 cut(s) 318
PvuII CAGCTG 1 cut(s) 382
RsaI GTAC 4 cut(s) 170, 209, 355, 458
RsaNI GTAC 4 cut(s) 169, 208, 354, 457
SaqAI TTAA 3 cut(s) 258, 335, 408
SatI GCNGC 4 cut(s) 157, 314, 380, 440
Sau3AI GATC 3 cut(s) 21, 30, 474
Sau96I GGNCC 2 cut(s) 420, 554
ScaI AGTACT 3 cut(s) 170, 355, 458
ScrFI CCNGG 1 cut(s) 575
SfaNI GCATC 2 cut(s) 109, 334
SfcI CTRYAG 2 cut(s) 198, 314
SfuI TTCGAA 1 cut(s) 505
SinI GGWCC 1 cut(s) 420
SmlI CTYRAG 1 cut(s) 349
SmoI CTYRAG 1 cut(s) 349
Sse9I AATT 4 cut(s) 255, 319, 450, 592
SsiI CCGC 1 cut(s) 157
SspI AATATT 1 cut(s) 269
StyD4I CCNGG 1 cut(s) 573
TaaI ACNGT 1 cut(s) 50
TaqI TCGA 4 cut(s) 33, 151, 477, 505
TasI AATT 4 cut(s) 255, 319, 450, 592
TatI WGTACW 3 cut(s) 168, 353, 456
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 4 cut(s) 281, 304, 414, 652
Tru1I TTAA 3 cut(s) 258, 335, 408
Tru9I TTAA 3 cut(s) 258, 335, 408
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 3 cut(s) 313, 379, 439
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 447
VpaK11BI GGWCC 1 cut(s) 420
VspI ATTAAT 2 cut(s) 258, 408
XapI RAATTY 1 cut(s) 319
ZrmI AGTACT 3 cut(s) 170, 355, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.