Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003722

Physical Location & Seq

Genomic Coordinates Forward (+)

50451087 .. 50459165

Gene Structure 8079 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1403600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGGGAGGGGAAAGATTGAAATCAAGAGGATTGAGAACACGACGAATCGGCAAGTGACCTTCTGCAAACGAAGAAATGGGCTGCTGAAGAAAGCATATGAATTATCCATTCTCTGTGATGCTGAAATTGCCCTCATTGTCTTCTCTAGCCGGGGCCGTCTCTACGAGTACTCTAACAACAATATAAGAAACACCATAGAGAGGTACAAGAAGGCATGTTCAGATAGCACAGGATCAACTTCTATTACTGAAATTAATGCTCAGTATTATCAACAGGAATCGGCAAAACTGAGGCAACAGATTCAAATGCTGCAGAACTATAACAGGCACTTAATGGGAGATGCCTTGAGTAATCTGACTGTGAAAGAACTAAAGCAGCTGGAAAATAGGCTTGAACGAGGCATGACTAGAATCAGGTCCAAGAAGGATGAAATGCTGATTGCAGAGATTGAGTACTTGCAGAAAAAGGAGATTGAGCTGGAAAACGAAAATGTTTATCTTCGAACTAAGATATCAGAAGTTGAGAGGCACCAAGCAAACATGGTTTCTGTGCCAGAGATGAATGCAATCCAGGCATTAGCTTCGCGCAATTTCTTTAGCCAGAATATCATTGAGGGTGGAGGAGCTACCTTCCCACAGCAAAACAAGAAGATTCTCCATCTTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

223

Amino Acids

25.74

Weight (kDa)

9.45

Isoelectric Point (pI)

59.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1.6e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	86 - 171	3.1e-28	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09960 AT4G09960 AT4G09960 AT4G09960 AT4G09960 AT4G09960
fragaria_vesca	FvH4_5g32540 FvH4_5g32540
malus_domestica	MD08G1216500.v1.1 MD15G1403600.v1.1
prunus_persica	Prupe.1G549600_v2.0.a1 Prupe.1G549600_v2.0.a1 Prupe.1G549600_v2.0.a1
pyrus_communis	pycom08g18740 pycom15g36090
rosa_chinensis	RchiOBHm_Chr7g0229221
rosa_laevigata	RLG00000001521
rosa_roxburghii	Rroxscaffold_3G00230530
rosa_rugosa	Rorug07G0256700 Rorug07G0256800 Rorug07G0256900 Rorug07G0256900 Rorug07G0256900 Rorug07G0256900 Rorug07G0257000 Rorug07G0257100 Rorug07G0257100 Rorug07G0257400 Rorug07G0257500 Rorug07G0257600 Rorug07G0257800
rosa_samantha	Rh7BG387100 Rh7CG426500
rosa_wichuraiana	Rw0G001920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	528
AccII	CGCG	1 cut(s)	586
AclWI	GGATC	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	107
AfaI	GTAC	3 cut(s)	170, 206, 455
AfiI	CCNNNNNNNGG	1 cut(s)	201
AgsI	TTSAA	3 cut(s)	20, 305, 395
AjnI	CCWGG	1 cut(s)	570
AluBI	AGCT	4 cut(s)	379, 478, 581, 626
AluI	AGCT	4 cut(s)	379, 478, 581, 626
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	1 cut(s)	241
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	3 cut(s)	82, 310, 376
AseI	ATTAAT	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	588
AspS9I	GGNCC	2 cut(s)	154, 417
AsuC2I	CCSGG	1 cut(s)	152
AsuII	TTCGAA	1 cut(s)	502
AvaII	GGWCC	1 cut(s)	417
BanI	GGYRCC	1 cut(s)	528
BbsI	GAAGAC	1 cut(s)	133
BbvI	GCAGC	3 cut(s)	69, 297, 388
BccI	CCATC	1 cut(s)	666
BceAI	ACGGC	1 cut(s)	141
BcgI	CGANNNNNNTGC	2 cut(s)	564, 598
BciT130I	CCWGG	1 cut(s)	572
BcnI	CCSGG	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	2 cut(s)	147, 408
BfmI	CTRYAG	1 cut(s)	311
BisI	GCNGC	3 cut(s)	83, 311, 377
BlsI	GCNGC	3 cut(s)	84, 312, 378
BmcAI	AGTACT	2 cut(s)	170, 455
Bme1390I	CCNGG	2 cut(s)	152, 572
Bme18I	GGWCC	1 cut(s)	417
BmgT120I	GGNCC	2 cut(s)	154, 417
BmiI	GGNNCC	2 cut(s)	155, 530
BmrFI	CCNGG	2 cut(s)	152, 572
BmsI	GCATC	2 cut(s)	109, 331
BpiI	GAAGAC	1 cut(s)	133
Bpu14I	TTCGAA	1 cut(s)	502
BpuEI	CTTGAG	1 cut(s)	367
BpuMI	CCSGG	1 cut(s)	152
BsaBI	GATNNNNATC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
Bse8I	GATNNNNATC	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	572
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	1 cut(s)	433
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseMII	CTCAG	2 cut(s)	275, 281
BseRI	GAGGAG	1 cut(s)	636
BseXI	GCAGC	3 cut(s)	69, 297, 388
Bsh1236I	CGCG	1 cut(s)	586
BshFI	GGCC	1 cut(s)	156
BshNI	GGYRCC	1 cut(s)	528
BsiSI	CCGG	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	164
BsmBI	CGTCTC	1 cut(s)	164
BsmI	GAATGC	1 cut(s)	568
BsnI	GGCC	1 cut(s)	156
Bsp119I	TTCGAA	1 cut(s)	502
Bsp143I	GATC	1 cut(s)	233
BspANI	GGCC	1 cut(s)	156
BspCNI	CTCAG	2 cut(s)	274, 282
BspFNI	CGCG	1 cut(s)	586
BspLI	GGNNCC	2 cut(s)	155, 530
BspMAI	CTGCAG	1 cut(s)	315
BspPI	GGATC	1 cut(s)	241
BspT104I	TTCGAA	1 cut(s)	502
BspT107I	GGYRCC	1 cut(s)	528
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	1 cut(s)	233
Bst2UI	CCWGG	1 cut(s)	572
Bst4CI	ACNGT	1 cut(s)	361
BstBI	TTCGAA	1 cut(s)	502
BstDEI	CTNAG	3 cut(s)	261, 290, 507
BstF5I	GGATG	1 cut(s)	433
BstFNI	CGCG	1 cut(s)	586
BstHHI	GCGC	1 cut(s)	588
BstKTI	GATC	1 cut(s)	236
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	1 cut(s)	233
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 572
BstNI	CCWGG	1 cut(s)	572
BstNSI	RCATGY	1 cut(s)	219
BstSCI	CCNGG	2 cut(s)	150, 570
BstSFI	CTRYAG	1 cut(s)	311
BstUI	CGCG	1 cut(s)	586
BstV1I	GCAGC	3 cut(s)	69, 297, 388
BstV2I	GAAGAC	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	433
CfoI	GCGC	1 cut(s)	588
Cfr13I	GGNCC	2 cut(s)	154, 417
Csp6I	GTAC	3 cut(s)	169, 205, 454
CviAII	CATG	3 cut(s)	216, 403, 541
CviJI	RGCY	9 cut(s)	82, 150, 156, 379, 391, 478, 581, 600, 626
CviKI_1	RGCY	9 cut(s)	82, 150, 156, 379, 391, 478, 581, 600, 626
CviQI	GTAC	3 cut(s)	169, 205, 454
DdeI	CTNAG	3 cut(s)	261, 290, 507
DpnI	GATC	1 cut(s)	235
DpnII	GATC	1 cut(s)	233
Eco32I	GATATC	1 cut(s)	513
Eco47I	GGWCC	1 cut(s)	417
Eco57I	CTGAAG	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	570
EcoRV	GATATC	1 cut(s)	513
Esp3I	CGTCTC	1 cut(s)	164
FaeI	CATG	3 cut(s)	219, 406, 544
FaiI	YATR	8 cut(s)	97, 99, 185, 197, 217, 321, 404, 542
FatI	CATG	3 cut(s)	215, 402, 540
FauNDI	CATATG	1 cut(s)	97
Fnu4HI	GCNGC	3 cut(s)	83, 311, 377
FokI	GGATG	1 cut(s)	440
Fsp4HI	GCNGC	3 cut(s)	83, 311, 377
FspBI	CTAG	2 cut(s)	147, 408
GlaI	GCGC	1 cut(s)	587
GluI	GCNGC	3 cut(s)	83, 311, 377
HaeIII	GGCC	1 cut(s)	156
HapII	CCGG	1 cut(s)	151
HhaI	GCGC	1 cut(s)	588
Hin1II	CATG	3 cut(s)	219, 406, 544
Hin6I	GCGC	1 cut(s)	586
HinP1I	GCGC	1 cut(s)	586
HinfI	GANTC	5 cut(s)	46, 278, 301, 411, 652
HpaII	CCGG	1 cut(s)	151
Hpy188I	TCNGA	3 cut(s)	223, 357, 517
Hpy188III	TCNNGA	1 cut(s)	25
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	4 cut(s)	70, 205, 418, 640
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4V	TGCA	5 cut(s)	66, 313, 443, 460, 566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 572
HpyF3I	CTNAG	3 cut(s)	261, 290, 507
Hsp92II	CATG	3 cut(s)	219, 406, 544
HspAI	GCGC	1 cut(s)	586
Kzo9I	GATC	1 cut(s)	233
LmnI	GCTCC	1 cut(s)	623
Lsp1109I	GCAGC	3 cut(s)	69, 297, 388
LweI	GCATC	2 cut(s)	109, 331
MaeI	CTAG	2 cut(s)	147, 408
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	1 cut(s)	235
MboI	GATC	1 cut(s)	233
MboII	GAAGA	5 cut(s)	84, 100, 133, 491, 661
MluCI	AATT	4 cut(s)	101, 126, 252, 589
MnlI	CCTC	8 cut(s)	21, 143, 195, 285, 392, 519, 607, 614
MseI	TTAA	2 cut(s)	255, 332
MspA1I	CMGCKG	1 cut(s)	379
MspI	CCGG	1 cut(s)	151
MspR9I	CCNGG	2 cut(s)	152, 572
Mva1269I	GAATGC	1 cut(s)	568
MvaI	CCWGG	1 cut(s)	572
MvnI	CGCG	1 cut(s)	586
MwoI	GCNNNNNNNGC	2 cut(s)	128, 572
NciI	CCSGG	1 cut(s)	152
NdeI	CATATG	1 cut(s)	97
NdeII	GATC	1 cut(s)	233
NlaIII	CATG	3 cut(s)	219, 406, 544
NlaIV	GGNNCC	2 cut(s)	155, 530
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	219
NspV	TTCGAA	1 cut(s)	502
PctI	GAATGC	1 cut(s)	568
PfeI	GAWTC	5 cut(s)	46, 278, 301, 411, 652
PkrI	GCNGC	3 cut(s)	84, 312, 378
PshBI	ATTAAT	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	570
PspGI	CCWGG	1 cut(s)	570
PspN4I	GGNNCC	2 cut(s)	155, 530
PspPI	GGNCC	2 cut(s)	154, 417
PstI	CTGCAG	1 cut(s)	315
PvuII	CAGCTG	1 cut(s)	379
RsaI	GTAC	3 cut(s)	170, 206, 455
RsaNI	GTAC	3 cut(s)	169, 205, 454
SaqAI	TTAA	2 cut(s)	255, 332
SatI	GCNGC	3 cut(s)	83, 311, 377
Sau3AI	GATC	1 cut(s)	233
Sau96I	GGNCC	2 cut(s)	154, 417
ScaI	AGTACT	2 cut(s)	170, 455
ScrFI	CCNGG	2 cut(s)	152, 572
SetI	ASST	8 cut(s)	62, 206, 381, 419, 480, 583, 628, 632
SfaNI	GCATC	2 cut(s)	109, 331
SfcI	CTRYAG	1 cut(s)	311
SfuI	TTCGAA	1 cut(s)	502
SinI	GGWCC	1 cut(s)	417
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
Sse9I	AATT	4 cut(s)	101, 126, 252, 589
SspMI	CTAG	2 cut(s)	147, 408
StyD4I	CCNGG	2 cut(s)	150, 570
TaaI	ACNGT	1 cut(s)	361
TaqI	TCGA	1 cut(s)	502
TasI	AATT	4 cut(s)	101, 126, 252, 589
TatI	WGTACW	2 cut(s)	168, 453
TfiI	GAWTC	5 cut(s)	46, 278, 301, 411, 652
Tru1I	TTAA	2 cut(s)	255, 332
Tru9I	TTAA	2 cut(s)	255, 332
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	82, 310, 376
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	114, 444, 575
VpaK11BI	GGWCC	1 cut(s)	417
VspI	ATTAAT	1 cut(s)	255
XceI	RCATGY	1 cut(s)	219
XspI	CTAG	2 cut(s)	147, 408
ZrmI	AGTACT	2 cut(s)	170, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.