Rh7CG426500
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003722
Physical Location & Seq
Reverse (-)
55578477 .. 55585413
6937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG426500.1

Sequence Viewer

Length: 747 bp
ATGGGGAGAGGAAAGATTGAGATAAAGAGGATTGAGAACACCACCAACCGTCAAGTGACCTTCTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCTTATGAGCTCTCCATTCTCTGTGAGGCTGAAGTTGCTCTCATTGTCTTCTCTAGCCGTGGCCGCCTCTACGAGTATTCTAACAACAACATAAGAAATACTATAGAGAGGTACAAGAAGGCATCTTCCGATAACTCAGGTGCAACCACTATTACAGAAATCAATGCTCAATATTACCAACAGGAATCGGCAAAGCTGAGGCACCAAATTCAAATGCTGCAGAATTCTAACAGGCACTTAATGGGAGATTCGTTGACTAATCTGACAGTGAAAGAACTAAAGCAGCTAGAGAACAGGCTTGAACGAGGCCTTACTAGAATCAGGTCCAAGAAGGTAAAAATTGATGAAAACGAATGTGAAAGTTACGAAAATGCATGCATGCATTTCACGACAAAGACCGAGCAAGAACAGCATGAAATGTTGCTTGCTGAAATTGAGTACTTGCAGAAAAGGGAGGTTGAGCTGGAAAACGAGAATGTTTTAATTCGAGCTAAGATTGCAGAAGTTGAGAGGCTTCAGCAAGCAGACCTGGTTTCTGGGGCAGAGTTTAATGCAATCCAGGCGTTAGCTTCTCGCAATTTTTTTGGCTCCACTATGGTTGAGGGTGAGGCTTCATACTCACAGCCAGAGAAGAAATTGCTCCATCTGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

248

Amino Acids

28.66

Weight (kDa)

8.25

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 57 6.2e-26 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 86 - 154 1.5e-19 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 294
AciI CCGC 1 cut(s) 157
AcoI YGGCCR 1 cut(s) 154
AcsI RAATTY 2 cut(s) 300, 316
AcuI CTGAAG 2 cut(s) 144, 593
AfaI GTAC 2 cut(s) 206, 533
AgsI TTSAA 3 cut(s) 88, 305, 395
AjnI CCWGG 2 cut(s) 621, 651
AluBI AGCT 7 cut(s) 95, 103, 289, 379, 556, 584, 662
AluI AGCT 7 cut(s) 95, 103, 289, 379, 556, 584, 662
Alw21I GWGCWC 1 cut(s) 105
AoxI GGCC 2 cut(s) 154, 400
ApeKI GCWGC 2 cut(s) 310, 376
ApoI RAATTY 2 cut(s) 300, 316
AspS9I GGNCC 1 cut(s) 417
AsuHPI GGTGA 1 cut(s) 710
AvaII GGWCC 1 cut(s) 417
BanI GGYRCC 1 cut(s) 294
BanII GRGCYC 1 cut(s) 105
BbsI GAAGAC 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 105
BbvCI CCTCAGC 1 cut(s) 290
BbvI GCAGC 2 cut(s) 297, 388
BccI CCATC 1 cut(s) 744
BceAI ACGGC 1 cut(s) 135
BciT130I CCWGG 2 cut(s) 623, 653
BfaI CTAG 3 cut(s) 147, 380, 408
BfmI CTRYAG 2 cut(s) 195, 311
BisI GCNGC 3 cut(s) 157, 311, 377
BlsI GCNGC 3 cut(s) 158, 312, 378
BmcAI AGTACT 1 cut(s) 533
Bme1390I CCNGG 2 cut(s) 623, 653
Bme18I GGWCC 1 cut(s) 417
BmgT120I GGNCC 1 cut(s) 417
BmiI GGNNCC 2 cut(s) 296, 682
BmrFI CCNGG 2 cut(s) 623, 653
BmsI GCATC 1 cut(s) 224
BpiI GAAGAC 1 cut(s) 133
Bpu10I CCTNAGC 1 cut(s) 290
BsaJI CCNNGG 1 cut(s) 151
BseBI CCWGG 2 cut(s) 623, 653
BseDI CCNNGG 1 cut(s) 151
BseMII CTCAG 2 cut(s) 243, 281
BseXI GCAGC 2 cut(s) 297, 388
BshFI GGCC 2 cut(s) 156, 402
BshNI GGYRCC 1 cut(s) 294
BsiHKAI GWGCWC 1 cut(s) 105
BsnI GGCC 2 cut(s) 156, 402
Bsp1286I GDGCHC 1 cut(s) 105
BspACI CCGC 1 cut(s) 157
BspANI GGCC 2 cut(s) 156, 402
BspCNI CTCAG 2 cut(s) 242, 282
BspLI GGNNCC 2 cut(s) 296, 682
BspMAI CTGCAG 1 cut(s) 315
BspT107I GGYRCC 1 cut(s) 294
BssECI CCNNGG 1 cut(s) 151
Bst2UI CCWGG 2 cut(s) 623, 653
Bst4CI ACNGT 2 cut(s) 50, 361
BstC8I GCNNGC 4 cut(s) 469, 473, 519, 615
BstDEI CTNAG 3 cut(s) 229, 290, 585
BstDSI CCRYGG 1 cut(s) 151
BstMWI GCNNNNNNNGC 5 cut(s) 128, 156, 502, 590, 653
BstNI CCWGG 2 cut(s) 623, 653
BstNSI RCATGY 2 cut(s) 471, 475
BstSCI CCNGG 2 cut(s) 621, 651
BstSFI CTRYAG 2 cut(s) 195, 311
BstV1I GCAGC 2 cut(s) 297, 388
BstV2I GAAGAC 1 cut(s) 133
BsuRI GGCC 2 cut(s) 156, 402
BtgI CCRYGG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 366
Cac8I GCNNGC 4 cut(s) 469, 473, 519, 615
Cfr13I GGNCC 1 cut(s) 417
CsiI ACCWGGT 1 cut(s) 621
Csp6I GTAC 2 cut(s) 205, 532
CspCI CAANNNNNGTGG 2 cut(s) 673, 708
CviAII CATG 3 cut(s) 468, 472, 506
CviQI GTAC 2 cut(s) 205, 532
DdeI CTNAG 3 cut(s) 229, 290, 585
EaeI YGGCCR 1 cut(s) 154
Ecl136II GAGCTC 1 cut(s) 103
Eco147I AGGCCT 1 cut(s) 402
Eco24I GRGCYC 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 417
Eco53kI GAGCTC 1 cut(s) 103
Eco57I CTGAAG 2 cut(s) 144, 593
EcoICRI GAGCTC 1 cut(s) 103
EcoRI GAATTC 1 cut(s) 316
EcoRII CCWGG 2 cut(s) 621, 651
EcoT22I ATGCAT 3 cut(s) 469, 473, 477
EcoT38I GRGCYC 1 cut(s) 105
FaeI CATG 3 cut(s) 471, 475, 509
FaiI YATR 8 cut(s) 99, 185, 197, 469, 473, 507, 689, 709
FatI CATG 3 cut(s) 467, 471, 505
Fnu4HI GCNGC 3 cut(s) 157, 311, 377
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 3 cut(s) 157, 311, 377
FspBI CTAG 3 cut(s) 147, 380, 408
GluI GCNGC 3 cut(s) 157, 311, 377
HaeIII GGCC 2 cut(s) 156, 402
Hin1II CATG 3 cut(s) 471, 475, 509
HincII GTYRAC 1 cut(s) 348
HindII GTYRAC 1 cut(s) 348
HindIII AAGCTT 1 cut(s) 93
HinfI GANTC 3 cut(s) 278, 341, 411
HphI GGTGA 1 cut(s) 710
Hpy166II GTNNAC 1 cut(s) 348
Hpy188I TCNGA 2 cut(s) 223, 357
Hpy188III TCNNGA 1 cut(s) 481
Hpy8I GTNNAC 1 cut(s) 348
HpyAV CCTTC 3 cut(s) 70, 205, 418
HpyCH4III ACNGT 2 cut(s) 50, 361
HpyCH4V TGCA 9 cut(s) 66, 236, 313, 467, 471, 475, 538, 593, 647
HpyF10VI GCNNNNNNNGC 5 cut(s) 128, 156, 502, 590, 653
HpyF3I CTNAG 3 cut(s) 229, 290, 585
Hsp92II CATG 3 cut(s) 471, 475, 509
LmnI GCTCC 2 cut(s) 686, 738
Lsp1109I GCAGC 2 cut(s) 297, 388
LweI GCATC 1 cut(s) 224
MabI ACCWGGT 1 cut(s) 621
MaeI CTAG 3 cut(s) 147, 380, 408
MaeIII GTNAC 2 cut(s) 55, 455
MboII GAAGA 5 cut(s) 84, 100, 133, 210, 736
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 7 cut(s) 300, 316, 432, 525, 576, 670, 728
Mph1103I ATGCAT 3 cut(s) 469, 473, 477
MseI TTAA 3 cut(s) 332, 575, 642
MspR9I CCNGG 2 cut(s) 623, 653
MvaI CCWGG 2 cut(s) 623, 653
MwoI GCNNNNNNNGC 5 cut(s) 128, 156, 502, 590, 653
NlaIII CATG 3 cut(s) 471, 475, 509
NlaIV GGNNCC 2 cut(s) 296, 682
NmuCI GTSAC 1 cut(s) 55
NsiI ATGCAT 3 cut(s) 469, 473, 477
NspI RCATGY 2 cut(s) 471, 475
PaeI GCATGC 2 cut(s) 471, 475
PceI AGGCCT 1 cut(s) 402
PfeI GAWTC 3 cut(s) 278, 341, 411
PkrI GCNGC 3 cut(s) 158, 312, 378
Psp124BI GAGCTC 1 cut(s) 105
Psp6I CCWGG 2 cut(s) 621, 651
PspGI CCWGG 2 cut(s) 621, 651
PspN4I GGNNCC 2 cut(s) 296, 682
PspPI GGNCC 1 cut(s) 417
PstI CTGCAG 1 cut(s) 315
RsaI GTAC 2 cut(s) 206, 533
RsaNI GTAC 2 cut(s) 205, 532
SacI GAGCTC 1 cut(s) 105
SaqAI TTAA 3 cut(s) 332, 575, 642
SatI GCNGC 3 cut(s) 157, 311, 377
Sau96I GGNCC 1 cut(s) 417
ScaI AGTACT 1 cut(s) 533
ScrFI CCNGG 2 cut(s) 623, 653
SduI GDGCHC 1 cut(s) 105
SexAI ACCWGGT 1 cut(s) 621
SfaNI GCATC 1 cut(s) 224
SfcI CTRYAG 2 cut(s) 195, 311
SinI GGWCC 1 cut(s) 417
SphI GCATGC 2 cut(s) 471, 475
Sse9I AATT 7 cut(s) 300, 316, 432, 525, 576, 670, 728
SseBI AGGCCT 1 cut(s) 402
SsiI CCGC 1 cut(s) 157
SspI AATATT 1 cut(s) 266
SspMI CTAG 3 cut(s) 147, 380, 408
SstI GAGCTC 1 cut(s) 105
StuI AGGCCT 1 cut(s) 402
StyD4I CCNGG 2 cut(s) 621, 651
TaaI ACNGT 2 cut(s) 50, 361
TaqI TCGA 1 cut(s) 580
TaqII GACCGA 1 cut(s) 506
TasI AATT 7 cut(s) 300, 316, 432, 525, 576, 670, 728
TatI WGTACW 1 cut(s) 531
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 3 cut(s) 278, 341, 411
Tru1I TTAA 3 cut(s) 332, 575, 642
Tru9I TTAA 3 cut(s) 332, 575, 642
TscAI CASTG 1 cut(s) 366
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 2 cut(s) 310, 376
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 3 cut(s) 453, 522, 696
TspRI CASTG 1 cut(s) 366
VpaK11BI GGWCC 1 cut(s) 417
XapI RAATTY 2 cut(s) 300, 316
XceI RCATGY 2 cut(s) 471, 475
XspI CTAG 3 cut(s) 147, 380, 408
ZrmI AGTACT 1 cut(s) 533
Zsp2I ATGCAT 3 cut(s) 469, 473, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.