Rorug07G0257100
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000615
Physical Location & Seq
Forward (+)
24077083 .. 24082420
5338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0257100.1

Sequence Viewer

Length: 3369 bp
ATGATGGCCTCTAATTACCCAAATGGATCCTCCAGGTTTAACCATCTTAAGAAAACTAGCAATGACGTTGACAGTGATGATATTGGGAGTGTTGAGTTTGCAACCTACACTGTCCAGATACCCGCCACACCGGACAACCAGCCTGCCGGAGTTTCCTTGCAGCGGTCCACTTCTCAGAGAGTTGAGGACCAGTATGCATCCAGTTCTTTGTTCACAGGTGGCTACAACTGCGTTACACGAGCCCAGTTGAAGGACAAAGTGATTGAATCCGAAACAAGCCATCCCCAGATGACATGGGCCAAGGGGTCTTATTGTACCGTTCCTGGATGTGATGCTCAGGTGGTGACTGATGAGAGGGGATTGGATATAGTCCCTTGTGAATGCGGTTACAAGATTTGTATGGATTGTTATAGGGATGCTATGAGAAATGGTGAGAGTGATTGTCCGGGCTGCAGAGAACCTTATAAGGAGATGGACATGAATGAGTATGGTGTGACTGGTCGGCAGCCTTTGCTGTCAACGGATGGGATGTCAAAGACGGACAGGAGGATGTCGCTTATGAAATCAAAATCGATGAAGTCAAAAGCGTTGGTGGAGAGTCAGGCTATTGAAATGGATCAGAATCAGTGGTTGTTTGAGTCAAAGGGGAGTTATGGATATGGGAATGCTATGTGGCCAAAGGAAGATGTGAGTGGGAGTCTTGATGGGATGAGTGGTGATCTTAAAATGTTCAAAGATAAGCAATGGAAGCCACTAACGCGTGAAGTGAAAATCTCGGCTGCAATTCTCAGTCCATATCGGCTTCTAGTACTAGCTCGACTGGTGATCCTTGGATTATTTTTGTATTGGAGAGTCACAAACCCTAATGATGATGCAGTGTGGTTGTGGCTTATGTCTGTGATTTGTGAATTCTGGTTTGCCTTCTCTTGGATACTTGATCAGCTTCCAAAGCTGTGCCCCATAAATCGCATTGCTTATGTTGATGTTTTAAAGGAGAAGTTTGAAACTCCAAATCCAAGCAATCCTACTGGAAAATCTGATCTTCCTGGAATAGACATTTTTGTATCTACAGCAGATCCAGAGAAAGAACCTCCTCTTGTAACTGCAAACACGATTCTCTCAATACTTGCAACTGACTACCCTGTTGAGAAGCTTGCCTGTTATGTTTCTGATGATGGAGGTGCACTTTTGACCTTTGAGGCCATGGCAGAAGCTGCTAGTTTTGCCAACTTGTGGGTACCATTTTGTCGGAAGCATGATATTGAGCCAAGGAACCCAGAATCTTACTTCAGCATGAAGAGAGATCCTTACAAGAATAAAGTAAAGTCCGATTTTGTAAGGGATCGCAGGCAGGTAAAGCGAGAGTATGATGAATTTAAGGTTAGGATTAATGGCCTTCCTGATTCAATCCGGAGACGTTCCGATGCCTTTAATGCTAGAGAGGAGATCAAAGCTATGAAACTTCGGAGAGAGACTAGAGATGATGAACCGCTGGAAAATTTAAAGTTCCCAAAAGCAACTTGGATGACTGATGGAACACAATGGCCTGGTACTTGGGTAGTTTCTGCCCCTGAGCATTCCAAGGGTGATCATGCCAGTATCATACAGGTGATGTTGAAACCCCCTAGCGATGAGCCACTTAAAGGAACAGAAGTAGATTCAAATTCCATGAATCTAAGTGAGGTTGATATCCGTCTTCCCATGCTTGTTTATGTTTCTCGTGAAAAGAGGCCTGGTTATGATCATAACAAGAAAGCCGGAGCTATGAATGCCTTGGTTCGAGCCTCAGCCGTCATGTCCAACGGCGCCTTCATTCTCAATCTTGACTGTGACCACTACATCTACTACTCCCAAGCAATGAGAGAAGGCATGTGCTTCATGATGGACCGCGGTGGTGAACGCCTTTGTTATGTCCAATTTCCTCAGAGGTTTGAAGGAATAGACCCTTCTGATCGCTATGCCAACCACAACACTGTTTTCTTTGACGTCAACATGCGTGCTCTTGATGGAATTCAGGGTCCAGTATATGTGGGAACAGGATGTCTCTTTCGTCGGACTGCCTTATATGGCTTTGATCCACCTCCAATTAAAGAACGTGATGGTTGCTGTAGTGGTTTCTTTGCCAAGCGCAAGAAAACTTCTTCAGTTGCTTCTGCTCCTGAAGTTGACTCCCAAGACGGATCAATTGAACTAGACAATGACAATGAAGAAATGGGTCTTGCTCTTATTCCTAAAACATTTGGGAACTCAAGCCTCTTTGTTGACTCCATCCGAGTTGCAGAGTTCCAAGGTCGGCCCCTTGCTGATCATCCATCCATGAAAAATGGACGCCCCATTGGTGCCCTTACTCTTCCCCGGGAACTTCTTGATGCATCAACAGTTGCAGAGGCAATTAGTTGCATCTCATGCTGGTATGAGGACAAGACTGAATGGGGCCAACGAGTTGGGTGGATTTATGGTTCAGTGACTGAAGATGTGGTCACAGGTTACAGGATGCACAACCGTGGATGGAAATCTATCTACTGTGTCACTAAGAAGGATGCCTTTCGAGGAAGTGCCCCAATCAATCTCACTGACCGGCTTCACCAGGTTTTGCGGTGGGCTACTGGCTCTGTTGAAATATTCTTTTCTCGTAACAATGCTCTTCTAGCCAGCTCCAGGATGAAATTTCTCCAAAGGATTGCCTACTTGAATGTCGGAATGTACCCTTTCACATCCATTTTCCTCATTGTTTACTGCTTCCTTCCTGCACTCTCACTCTTTACTGATCAGTTCATTGTTCAGCAACTAAATGTAACCTTCCTGGTATATCTCTTGGGCATTACAATTACCCTCATTCTTCTTGCCGTGCTTGAGATCAAGTGGTCCGGAATTGAACTTGAGGAGTGGTGGAGGAATGAGCAGTTTTGGTTGATTGGAGGCACAAGTGCCCACCTTGCTGCTGTGCTCCAAGGTCTTCTAAAGGTTATAGCAGGAATTGAGATCTCATTCACTTTGACATCGAAATCGGGAGGCGATGATGCGGATGATGATTTTGTTGATCTTTATATCTTCAAGTGGACATCTCTGATGGTACCACCTATTACTATCATAATGGTTAACTTGATTGGAATAGGTGTTGCTTTTTGTCGAACAATATACAGTGATAACCCAAAGTGGAGCAGCTTGCTTGGAGGTTCTTTTTTCAGCTTCTGGGTGTTGGCTCATCTATACCCCTTCGCCAAAGGACTTATGGGAAGACGAGGGAGGACCCCCACAATTGTGTTTGTCTGGTCTGGGCTTCTAGCAATCACCATATCTCTCCTTTGGGTGGCTATTGATCCCCCATCAGGCAGTAGTGGAATTGGAGGTTCATTCCAGTTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

1122

Amino Acids

126.15

Weight (kDa)

5.83

Isoelectric Point (pI)

36.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_4 PF14570 107 - 156 2e-17 RING/Ubox like zinc-binding domain
Cellulose_synt PF03552 351 - 1110 0.0 Cellulose synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 465
AatII GACGTC 1 cut(s) 1989
Acc36I ACCTGC 1 cut(s) 1342
Acc65I GGTACC 2 cut(s) 1237, 3073
AccB1I GGYRCC 4 cut(s) 1237, 1805, 2339, 3073
AccB7I CCANNNNNTGG 1 cut(s) 1233
AccII CGCG 2 cut(s) 760, 1890
AccIII TCCGGA 2 cut(s) 1410, 2867
AciI CCGC 8 cut(s) 123, 163, 384, 1490, 1888, 1890, 2596, 3023
AcoI YGGCCR 1 cut(s) 674
AcsI RAATTY 6 cut(s) 908, 1373, 1498, 1663, 2010, 2666
AcuI CTGAAG 4 cut(s) 1273, 2127, 2181, 2490
AcyI GRCGYC 3 cut(s) 1806, 1986, 2329
AfaI GTAC 6 cut(s) 316, 810, 1239, 1552, 2705, 3075
AfiI CCNNNNNNNGG 8 cut(s) 162, 250, 927, 1233, 1643, 2658, 3310, 3329
AflII CTTAAG 1 cut(s) 47
AflIII ACRYGT 1 cut(s) 758
AjnI CCWGG 8 cut(s) 32, 322, 1045, 1546, 1732, 2586, 2657, 2802
AjuI GAANNNNNNNTTGG 2 cut(s) 1793, 1825
AleI CACNNNNGTG 2 cut(s) 2502, 3260
AloI GAACNNNNNNTCC 2 cut(s) 2443, 2475
Alw21I GWGCWC 3 cut(s) 1186, 2002, 2949
Alw26I GTCTC 3 cut(s) 1408, 1466, 2048
Alw44I GTGCAC 1 cut(s) 1182
AlwNI CAGNNNCTG 3 cut(s) 1214, 2468, 3192
Ama87I CYCGRG 1 cut(s) 2355
Aor13HI TCCGGA 2 cut(s) 1410, 2867
AoxI GGCC 9 cut(s) 6, 297, 674, 1200, 1393, 1544, 1730, 2294, 2434
ApaLI GTGCAC 1 cut(s) 1182
ApeKI GCWGC 7 cut(s) 160, 450, 505, 779, 1214, 2939, 3162
ApoI RAATTY 6 cut(s) 908, 1373, 1498, 1663, 2010, 2666
AseI ATTAAT 1 cut(s) 1389
Asp718I GGTACC 2 cut(s) 1237, 3073
AspLEI GCGC 2 cut(s) 1808, 2130
AspS9I GGNCC 9 cut(s) 165, 187, 297, 1885, 2018, 2295, 2434, 2865, 3249
AsuC2I CCSGG 3 cut(s) 447, 2356, 2357
AsuHPI GGTGA 9 cut(s) 355, 443, 728, 835, 1598, 1621, 1907, 2576, 3283
AvaI CYCGRG 1 cut(s) 2355
AvaII GGWCC 6 cut(s) 165, 187, 1885, 2018, 2865, 3249
BaeGI GKGCMC 5 cut(s) 959, 1186, 2344, 2560, 2932
BaeI ACNNNNGTAYC 2 cut(s) 1542, 1575
BalI TGGCCA 1 cut(s) 676
BamHI GGATCC 1 cut(s) 26
BanI GGYRCC 4 cut(s) 1237, 1805, 2339, 3073
BanII GRGCYC 1 cut(s) 244
BauI CACGAG 2 cut(s) 237, 1719
BbsI GAAGAC 3 cut(s) 1688, 2948, 3244
Bbv12I GWGCWC 3 cut(s) 1186, 2002, 2949
BbvCI CCTCAGC 1 cut(s) 1786
BbvI GCAGC 7 cut(s) 172, 437, 517, 766, 1201, 2926, 3174
BceAI ACGGC 3 cut(s) 1775, 1819, 2831
BciT130I CCWGG 8 cut(s) 34, 324, 1047, 1548, 1734, 2588, 2659, 2804
BciVI GTATCC 1 cut(s) 924
BclI TGATCA 5 cut(s) 937, 1588, 1741, 2305, 2767
BcnI CCSGG 3 cut(s) 447, 2356, 2357
BcoDI GTCTC 3 cut(s) 1408, 1466, 2048
BfmI CTRYAG 3 cut(s) 451, 1068, 2107
BfoI RGCGCY 1 cut(s) 1809
BfrI CTTAAG 1 cut(s) 47
BfuAI ACCTGC 1 cut(s) 1342
BfuI GTATCC 1 cut(s) 924
BglII AGATCT 1 cut(s) 2982
BisI GCNGC 7 cut(s) 161, 451, 506, 780, 1215, 2940, 3163
BlsI GCNGC 7 cut(s) 162, 452, 507, 781, 1216, 2941, 3164
BmcAI AGTACT 1 cut(s) 810
Bme18I GGWCC 6 cut(s) 165, 187, 1885, 2018, 2865, 3249
BmeT110I CYCGRG 1 cut(s) 2355
BmgT120I GGNCC 9 cut(s) 165, 187, 297, 1885, 2018, 2295, 2434, 2865, 3249
BmrI ACTGGG 1 cut(s) 238
BmuI ACTGGG 1 cut(s) 238
BpiI GAAGAC 3 cut(s) 1688, 2948, 3244
BpmI CTGGAG 2 cut(s) 16, 2641
Bpu10I CCTNAGC 3 cut(s) 336, 1572, 1786
BpuEI CTTGAG 3 cut(s) 2233, 2873, 2900
BpuMI CCSGG 3 cut(s) 447, 2356, 2357
Bsa29I ATCGAT 1 cut(s) 572
BsaBI GATNNNNATC 2 cut(s) 621, 2512
BsaHI GRCGYC 3 cut(s) 1806, 1986, 2329
BsaWI WCCGGW 3 cut(s) 130, 1410, 2867
Bsc4I CCNNNNNNNGG 8 cut(s) 162, 250, 927, 1233, 1643, 2658, 3310, 3329
Bse118I RCCGGY 1 cut(s) 2577
Bse3DI GCAATG 4 cut(s) 67, 749, 969, 1863
Bse8I GATNNNNATC 2 cut(s) 621, 2512
BseAI TCCGGA 2 cut(s) 1410, 2867
BseBI CCWGG 8 cut(s) 34, 324, 1047, 1548, 1734, 2588, 2659, 2804
BseCI ATCGAT 1 cut(s) 572
BseJI GATNNNNATC 2 cut(s) 621, 2512
BseLI CCNNNNNNNGG 8 cut(s) 162, 250, 927, 1233, 1643, 2658, 3310, 3329
BseMI GCAATG 4 cut(s) 67, 749, 969, 1863
BseMII CTCAG 6 cut(s) 188, 350, 802, 1563, 1800, 1937
BseRI GAGGAG 3 cut(s) 1083, 1457, 2897
BseSI GKGCMC 5 cut(s) 959, 1186, 2344, 2560, 2932
BseXI GCAGC 7 cut(s) 172, 437, 517, 766, 1201, 2926, 3174
BsgI GTGCAG 1 cut(s) 2733
Bsh1236I CGCG 2 cut(s) 760, 1890
BshFI GGCC 9 cut(s) 8, 299, 676, 1202, 1395, 1546, 1732, 2296, 2436
BshNI GGYRCC 4 cut(s) 1237, 1805, 2339, 3073
BshVI ATCGAT 1 cut(s) 572
BsiHKAI GWGCWC 3 cut(s) 1186, 2002, 2949
BsiHKCI CYCGRG 1 cut(s) 2355
BsiSI CCGG 8 cut(s) 131, 147, 446, 1411, 1758, 2356, 2578, 2868
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 8 cut(s) 162, 250, 927, 1233, 1643, 2658, 3310, 3329
BsmAI GTCTC 3 cut(s) 1408, 1466, 2048
BsmBI CGTCTC 1 cut(s) 1408
BsmFI GGGAC 1 cut(s) 356
BsmI GAATGC 4 cut(s) 386, 670, 1576, 1774
BsnI GGCC 9 cut(s) 8, 299, 676, 1202, 1395, 1546, 1732, 2296, 2436
BsoBI CYCGRG 1 cut(s) 2355
Bsp1286I GDGCHC 8 cut(s) 244, 959, 1186, 2002, 2344, 2560, 2932, 2949
Bsp13I TCCGGA 2 cut(s) 1410, 2867
Bsp19I CCATGG 1 cut(s) 1203
BspACI CCGC 8 cut(s) 123, 163, 384, 1490, 1888, 1890, 2596, 3023
BspANI GGCC 9 cut(s) 8, 299, 676, 1202, 1395, 1546, 1732, 2296, 2436
BspCNI CTCAG 6 cut(s) 187, 349, 801, 1564, 1799, 1936
BspDI ATCGAT 1 cut(s) 572
BspEI TCCGGA 2 cut(s) 1410, 2867
BspFNI CGCG 2 cut(s) 760, 1890
BspHI TCATGA 1 cut(s) 1878
BspMAI CTGCAG 1 cut(s) 455
BspMI ACCTGC 1 cut(s) 1342
BspQI GCTCTTC 1 cut(s) 2649
BspT107I GGYRCC 4 cut(s) 1237, 1805, 2339, 3073
BspTI CTTAAG 1 cut(s) 47
BsrDI GCAATG 4 cut(s) 67, 749, 969, 1863
BsrFI RCCGGY 1 cut(s) 2577
BssAI RCCGGY 1 cut(s) 2577
BssNI GRCGYC 3 cut(s) 1806, 1986, 2329
BssSI CACGAG 2 cut(s) 237, 1719
BssT1I CCWWGG 8 cut(s) 300, 829, 1203, 1268, 1581, 1773, 2287, 2950
Bst2BI CACGAG 2 cut(s) 237, 1719
Bst2UI CCWGG 8 cut(s) 34, 324, 1047, 1548, 1734, 2588, 2659, 2804
Bst4CI ACNGT 9 cut(s) 74, 112, 319, 1829, 1975, 2380, 2504, 2525, 3143
Bst6I CTCTTC 3 cut(s) 1292, 2355, 2649
BstACI GRCGYC 3 cut(s) 1806, 1986, 2329
BstAFI CTTAAG 1 cut(s) 47
BstAPI GCANNNNNTGC 3 cut(s) 511, 1214, 2406
BstC8I GCNNGC 6 cut(s) 144, 1155, 1349, 1998, 2653, 3167
BstDEI CTNAG 8 cut(s) 174, 336, 788, 1572, 1676, 1786, 1923, 2532
BstDSI CCRYGG 3 cut(s) 1203, 1888, 2503
BstFNI CGCG 2 cut(s) 760, 1890
BstH2I RGCGCY 1 cut(s) 1809
BstHHI GCGC 2 cut(s) 1808, 2130
BstMAI GTCTC 3 cut(s) 1408, 1466, 2048
BstNI CCWGG 8 cut(s) 34, 324, 1047, 1548, 1734, 2588, 2659, 2804
BstNSI RCATGY 2 cut(s) 1873, 1996
BstSFI CTRYAG 3 cut(s) 451, 1068, 2107
BstSLI GKGCMC 5 cut(s) 959, 1186, 2344, 2560, 2932
BstUI CGCG 2 cut(s) 760, 1890
BstV1I GCAGC 7 cut(s) 172, 437, 517, 766, 1201, 2926, 3174
BstV2I GAAGAC 3 cut(s) 1688, 2948, 3244
BstX2I RGATCY 4 cut(s) 26, 1075, 1303, 2982
BstXI CCANNNNNNTGG 1 cut(s) 2444
BstYI RGATCY 4 cut(s) 26, 1075, 1303, 2982
Bsu15I ATCGAT 1 cut(s) 572
BsuI GTATCC 1 cut(s) 924
BsuRI GGCC 9 cut(s) 8, 299, 676, 1202, 1395, 1546, 1732, 2296, 2436
BsuTUI ATCGAT 1 cut(s) 572
BtgI CCRYGG 3 cut(s) 1203, 1888, 2503
BtgZI GCGATG 2 cut(s) 1644, 3030
BtsI GCAGTG 1 cut(s) 882
BtsIMutI CAGTG 8 cut(s) 79, 108, 632, 882, 1971, 2469, 2571, 3148
BveI ACCTGC 1 cut(s) 1342
Cac8I GCNNGC 6 cut(s) 144, 1155, 1349, 1998, 2653, 3167
CaiI CAGNNNCTG 3 cut(s) 1214, 2468, 3192
CciI TCATGA 1 cut(s) 1878
CfoI GCGC 2 cut(s) 1808, 2130
Cfr10I RCCGGY 1 cut(s) 2577
Cfr13I GGNCC 9 cut(s) 165, 187, 297, 1885, 2018, 2295, 2434, 2865, 3249
Cfr42I CCGCGG 1 cut(s) 1891
Cfr9I CCCGGG 1 cut(s) 2355
ClaI ATCGAT 1 cut(s) 572
CseI GACGC 1 cut(s) 2337
CsiI ACCWGGT 1 cut(s) 2586
Csp6I GTAC 6 cut(s) 315, 809, 1238, 1551, 2704, 3074
CviQI GTAC 6 cut(s) 315, 809, 1238, 1551, 2704, 3074
DdeI CTNAG 8 cut(s) 174, 336, 788, 1572, 1676, 1786, 1923, 2532
DinI GGCGCC 1 cut(s) 1807
DraI TTTAAA 2 cut(s) 990, 1503
EaeI YGGCCR 1 cut(s) 674
Eam1104I CTCTTC 3 cut(s) 1292, 2355, 2649
EarI CTCTTC 3 cut(s) 1292, 2355, 2649
Eco130I CCWWGG 8 cut(s) 300, 829, 1203, 1268, 1581, 1773, 2287, 2950
Eco147I AGGCCT 1 cut(s) 1732
Eco24I GRGCYC 1 cut(s) 244
Eco32I GATATC 1 cut(s) 1690
Eco47I GGWCC 6 cut(s) 165, 187, 1885, 2018, 2865, 3249
Eco57I CTGAAG 4 cut(s) 1273, 2127, 2181, 2490
Eco88I CYCGRG 1 cut(s) 2355
EcoO109I RGGNCCY 1 cut(s) 3249
EcoRI GAATTC 2 cut(s) 908, 2010
EcoRII CCWGG 8 cut(s) 32, 322, 1045, 1546, 1732, 2586, 2657, 2802
EcoRV GATATC 1 cut(s) 1690
EcoT14I CCWWGG 8 cut(s) 300, 829, 1203, 1268, 1581, 1773, 2287, 2950
EcoT22I ATGCAT 2 cut(s) 199, 2374
EcoT38I GRGCYC 1 cut(s) 244
EgeI GGCGCC 1 cut(s) 1807
EheI GGCGCC 1 cut(s) 1807
ErhI CCWWGG 8 cut(s) 300, 829, 1203, 1268, 1581, 1773, 2287, 2950
Esp3I CGTCTC 1 cut(s) 1408
FalI AAGNNNNNCTT 2 cut(s) 2528, 2560
FaqI GGGAC 1 cut(s) 356
FauI CCCGC 1 cut(s) 130
FbaI TGATCA 5 cut(s) 937, 1588, 1741, 2305, 2767
Fnu4HI GCNGC 7 cut(s) 161, 451, 506, 780, 1215, 2940, 3163
FriOI GRGCYC 1 cut(s) 244
Fsp4HI GCNGC 7 cut(s) 161, 451, 506, 780, 1215, 2940, 3163
GlaI GCGC 2 cut(s) 1807, 2129
GluI GCNGC 7 cut(s) 161, 451, 506, 780, 1215, 2940, 3163
GsuI CTGGAG 2 cut(s) 16, 2641
HaeII RGCGCY 1 cut(s) 1809
HaeIII GGCC 9 cut(s) 8, 299, 676, 1202, 1395, 1546, 1732, 2296, 2436
HapII CCGG 8 cut(s) 131, 147, 446, 1411, 1758, 2356, 2578, 2868
HgaI GACGC 1 cut(s) 2337
HhaI GCGC 2 cut(s) 1808, 2130
Hin1I GRCGYC 3 cut(s) 1806, 1986, 2329
Hin6I GCGC 2 cut(s) 1806, 2128
HinP1I GCGC 2 cut(s) 1806, 2128
HincII GTYRAC 6 cut(s) 70, 519, 1990, 2167, 2263, 3100
HindII GTYRAC 6 cut(s) 70, 519, 1990, 2167, 2263, 3100
HindIII AAGCTT 1 cut(s) 1151
HpaI GTTAAC 1 cut(s) 3100
HpaII CCGG 8 cut(s) 131, 147, 446, 1411, 1758, 2356, 2578, 2868
HphI GGTGA 9 cut(s) 355, 443, 728, 835, 1598, 1621, 1907, 2576, 3283
Hpy99I CGWCG 1 cut(s) 2055
HpyCH4III ACNGT 9 cut(s) 74, 112, 319, 1829, 1975, 2380, 2504, 2525, 3143
HpyCH4IV ACGT 4 cut(s) 66, 1417, 1986, 2095
HpyF3I CTNAG 8 cut(s) 174, 336, 788, 1572, 1676, 1786, 1923, 2532
HpySE526I ACGT 4 cut(s) 66, 1417, 1986, 2095
Hsp92I GRCGYC 3 cut(s) 1806, 1986, 2329
HspAI GCGC 2 cut(s) 1806, 2128
KasI GGCGCC 1 cut(s) 1805
Kpn2I TCCGGA 2 cut(s) 1410, 2867
KpnI GGTACC 2 cut(s) 1241, 3077
Ksp22I TGATCA 5 cut(s) 937, 1588, 1741, 2305, 2767
KspAI GTTAAC 1 cut(s) 3100
KspI CCGCGG 1 cut(s) 1891
LguI GCTCTTC 1 cut(s) 2649
LmnI GCTCC 5 cut(s) 1760, 2161, 2660, 2952, 3159
Lsp1109I GCAGC 7 cut(s) 172, 437, 517, 766, 1201, 2926, 3174
MabI ACCWGGT 1 cut(s) 2586
MaeII ACGT 4 cut(s) 66, 1417, 1986, 2095
MfeI CAATTG 2 cut(s) 2184, 3258
MflI RGATCY 4 cut(s) 26, 1075, 1303, 2982
MhlI GDGCHC 8 cut(s) 244, 959, 1186, 2002, 2344, 2560, 2932, 2949
MlsI TGGCCA 1 cut(s) 676
MluI ACGCGT 1 cut(s) 758
MluNI TGGCCA 1 cut(s) 676
Mly113I GGCGCC 1 cut(s) 1806
MlyI GAGTC 6 cut(s) 607, 647, 706, 861, 2162, 2258
MmeI TCCRAC 4 cut(s) 1229, 1824, 2033, 2677
Mox20I TGGCCA 1 cut(s) 676
Mph1103I ATGCAT 2 cut(s) 199, 2374
MroI TCCGGA 2 cut(s) 1410, 2867
MscI TGGCCA 1 cut(s) 676
MslI CAYNNNNRTG 3 cut(s) 1607, 2502, 3260
Msp20I TGGCCA 1 cut(s) 676
MspA1I CMGCKG 3 cut(s) 163, 1492, 1890
MspCI CTTAAG 1 cut(s) 47
MspI CCGG 8 cut(s) 131, 147, 446, 1411, 1758, 2356, 2578, 2868
MunI CAATTG 2 cut(s) 2184, 3258
Mva1269I GAATGC 4 cut(s) 386, 670, 1576, 1774
MvaI CCWGG 8 cut(s) 34, 324, 1047, 1548, 1734, 2588, 2659, 2804
MvnI CGCG 2 cut(s) 760, 1890
NarI GGCGCC 1 cut(s) 1806
NciI CCSGG 3 cut(s) 447, 2356, 2357
NcoI CCATGG 1 cut(s) 1203
NmeAIII GCCGAG 1 cut(s) 755
NmuCI GTSAC 7 cut(s) 343, 493, 853, 1829, 2464, 2479, 2527
NsiI ATGCAT 2 cut(s) 199, 2374
NspI RCATGY 2 cut(s) 1873, 1996
OliI CACNNNNGTG 2 cut(s) 2502, 3260
PagI TCATGA 1 cut(s) 1878
PceI AGGCCT 1 cut(s) 1732
PciSI GCTCTTC 1 cut(s) 2649
PctI GAATGC 4 cut(s) 386, 670, 1576, 1774
PfeI GAWTC 7 cut(s) 266, 622, 1114, 1280, 1403, 1658, 1672
PflMI CCANNNNNTGG 1 cut(s) 1233
PfoI TCCNGGA 3 cut(s) 322, 1045, 2657
PkrI GCNGC 7 cut(s) 162, 452, 507, 781, 1216, 2941, 3164
PleI GAGTC 6 cut(s) 606, 646, 705, 860, 2162, 2258
PluTI GGCGCC 1 cut(s) 1809
PpsI GAGTC 6 cut(s) 606, 646, 705, 860, 2162, 2258
PpuMI RGGWCCY 1 cut(s) 3249
PshBI ATTAAT 1 cut(s) 1389
PsiI TTATAA 1 cut(s) 465
Psp5II RGGWCCY 1 cut(s) 3249
Psp6I CCWGG 8 cut(s) 32, 322, 1045, 1546, 1732, 2586, 2657, 2802
PspGI CCWGG 8 cut(s) 32, 322, 1045, 1546, 1732, 2586, 2657, 2802
PspPI GGNCC 9 cut(s) 165, 187, 297, 1885, 2018, 2295, 2434, 2865, 3249
PspPPI RGGWCCY 1 cut(s) 3249
PstI CTGCAG 1 cut(s) 455
PstNI CAGNNNCTG 3 cut(s) 1214, 2468, 3192
PsuI RGATCY 4 cut(s) 26, 1075, 1303, 2982
RsaI GTAC 6 cut(s) 316, 810, 1239, 1552, 2705, 3075
RsaNI GTAC 6 cut(s) 315, 809, 1238, 1551, 2704, 3074
RseI CAYNNNNRTG 3 cut(s) 1607, 2502, 3260
SacII CCGCGG 1 cut(s) 1891
SapI GCTCTTC 1 cut(s) 2649
SatI GCNGC 7 cut(s) 161, 451, 506, 780, 1215, 2940, 3163
Sau96I GGNCC 9 cut(s) 165, 187, 297, 1885, 2018, 2295, 2434, 2865, 3249
ScaI AGTACT 1 cut(s) 810
SchI GAGTC 6 cut(s) 607, 647, 706, 861, 2162, 2258
SduI GDGCHC 8 cut(s) 244, 959, 1186, 2002, 2344, 2560, 2932, 2949
SexAI ACCWGGT 1 cut(s) 2586
SfcI CTRYAG 3 cut(s) 451, 1068, 2107
SfoI GGCGCC 1 cut(s) 1807
Sfr303I CCGCGG 1 cut(s) 1891
SgrBI CCGCGG 1 cut(s) 1891
SinI GGWCC 6 cut(s) 165, 187, 1885, 2018, 2865, 3249
SmaI CCCGGG 1 cut(s) 2357
SmiMI CAYNNNNRTG 3 cut(s) 1607, 2502, 3260
SmlI CTYRAG 4 cut(s) 47, 2248, 2852, 2879
SmoI CTYRAG 4 cut(s) 47, 2248, 2852, 2879
SseBI AGGCCT 1 cut(s) 1732
SsiI CCGC 8 cut(s) 123, 163, 384, 1490, 1888, 1890, 2596, 3023
SspDI GGCGCC 1 cut(s) 1805
SspI AATATT 1 cut(s) 2622
StuI AGGCCT 1 cut(s) 1732
StyI CCWWGG 8 cut(s) 300, 829, 1203, 1268, 1581, 1773, 2287, 2950
TaaI ACNGT 9 cut(s) 74, 112, 319, 1829, 1975, 2380, 2504, 2525, 3143
TaiI ACGT 4 cut(s) 69, 1420, 1989, 2098
TaqI TCGA 6 cut(s) 572, 817, 1780, 2548, 3002, 3130
TatI WGTACW 1 cut(s) 808
TfiI GAWTC 7 cut(s) 266, 622, 1114, 1280, 1403, 1658, 1672
TscAI CASTG 8 cut(s) 79, 115, 632, 882, 1978, 2469, 2578, 3148
TseFI GTSAC 7 cut(s) 343, 493, 853, 1829, 2464, 2479, 2527
TseI GCWGC 7 cut(s) 160, 450, 505, 779, 1214, 2939, 3162
Tsp45I GTSAC 7 cut(s) 343, 493, 853, 1829, 2464, 2479, 2527
TspGWI ACGGA 4 cut(s) 536, 554, 1682, 2193
TspMI CCCGGG 1 cut(s) 2355
TspRI CASTG 8 cut(s) 79, 115, 632, 882, 1978, 2469, 2578, 3148
Van91I CCANNNNNTGG 1 cut(s) 1233
Vha464I CTTAAG 1 cut(s) 47
VneI GTGCAC 1 cut(s) 1182
VpaK11BI GGWCC 6 cut(s) 165, 187, 1885, 2018, 2865, 3249
VspI ATTAAT 1 cut(s) 1389
XapI RAATTY 6 cut(s) 908, 1373, 1498, 1663, 2010, 2666
XceI RCATGY 2 cut(s) 1873, 1996
XcmI CCANNNNNNNNNTGG 2 cut(s) 1518, 3229
XmaI CCCGGG 1 cut(s) 2355
ZraI GACGTC 1 cut(s) 1987
ZrmI AGTACT 1 cut(s) 810
Zsp2I ATGCAT 2 cut(s) 199, 2374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.