RchiOBHm_Chr7g0229171
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000615
Physical Location & Seq
Forward (+)
52603368 .. 52604903
1536 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20528

Sequence Viewer

Length: 738 bp
ATGGGTGGACGTTTGATTGATGTTGACCGGGAACTTCCCATTTCTAATGATGCTCGCACTGTGGTCTTAGTTGGACGCACTGGTAATGGAAAAAGTGCAACAGGCAACAGCATTCTTGGCAAAAACGCCTTCAAGGCCAAGCGTAGCTCTAGTAGGGTCACGACCACTACTGAATTGAAGACTGCTATCTTGAGAAATGGACAACAAATTAATGTTATAGACACTCCTGGTCTTTTTGATAATTCTGCCAAATCAGAATTTATTGGCAAAGAAATTGCCAAATGCATTAAATTGGCCGAGGATGGAATCCATGCTGTTCTTGTGGTTCTCTCAACTAGAACTCGCTTTACGAAAGAAGAGGAGTCTGCACTCCGTAGCTTGGAAATTCTATTTGGAAGTAAAATCTTTGACTATATGATTGTTATCTTCACCGGAGGAGATGAGTTGGAAGAAAATGATGAGACTTTGGAAGATTATTTGGGACATGATTGCCCGGAGCCTTTGAAGGAACTCCTTGGTCTGTGTGGAAATCGTTGTGTGCTTTTTGATAACAAGACCAAGGATAAAAGCAAGAGGGTCGAACAAGTGCAGCAGCTTCTGTCGCTTGTAAACTCGGTTATAGCACAGAATGGTGGGCAGCCATACACAGATGAGATATTTGCTGAAGCGAAGGTATTTGTTGTTTTCTCTTTTATTTGCAGTAAATATTTCTTGAGATTATTACTATGTTGGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

245

Amino Acids

27.16

Weight (kDa)

5.86

Isoelectric Point (pI)

35.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 19 - 224 1.2e-80 AIG1 family
MMR_HSR1 PF01926 20 - 126 7.8e-12 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 2 cut(s) 257, 384
AcuI CTGAAG 1 cut(s) 684
AfiI CCNNNNNNNGG 1 cut(s) 379
AgsI TTSAA 3 cut(s) 133, 178, 505
AjnI CCWGG 1 cut(s) 226
AjuI GAANNNNNNNTTGG 2 cut(s) 375, 407
AluBI AGCT 3 cut(s) 147, 378, 595
AluI AGCT 3 cut(s) 147, 378, 595
Alw26I GTCTC 1 cut(s) 455
AlwNI CAGNNNCTG 1 cut(s) 598
AoxI GGCC 2 cut(s) 135, 294
ApeKI GCWGC 3 cut(s) 589, 592, 637
ApoI RAATTY 2 cut(s) 257, 384
AseI ATTAAT 1 cut(s) 210
AsuC2I CCSGG 2 cut(s) 29, 494
AsuHPI GGTGA 1 cut(s) 421
BbsI GAAGAC 1 cut(s) 185
BbvI GCAGC 3 cut(s) 601, 604, 649
BccI CCATC 1 cut(s) 296
BcgI CGANNNNNNTGC 2 cut(s) 559, 593
BciT130I CCWGG 1 cut(s) 228
BcnI CCSGG 2 cut(s) 29, 494
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 2 cut(s) 150, 336
BglI GCCNNNNNGGC 1 cut(s) 134
BisI GCNGC 3 cut(s) 590, 593, 638
BlsI GCNGC 3 cut(s) 591, 594, 639
Bme1390I CCNGG 3 cut(s) 29, 228, 494
BmiI GGNNCC 1 cut(s) 498
BmrFI CCNGG 3 cut(s) 29, 228, 494
BmsI GCATC 1 cut(s) 40
BpiI GAAGAC 1 cut(s) 185
BpuEI CTTGAG 2 cut(s) 211, 733
BpuMI CCSGG 2 cut(s) 29, 494
BsaBI GATNNNNATC 1 cut(s) 422
BsaJI CCNNGG 3 cut(s) 297, 514, 558
BsaWI WCCGGW 1 cut(s) 431
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse1I ACTGG 1 cut(s) 85
Bse8I GATNNNNATC 1 cut(s) 422
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 3 cut(s) 297, 514, 558
BseGI GGATG 1 cut(s) 307
BseJI GATNNNNATC 1 cut(s) 422
BseLI CCNNNNNNNGG 1 cut(s) 379
BseNI ACTGG 1 cut(s) 85
BseRI GAGGAG 2 cut(s) 374, 450
BseXI GCAGC 3 cut(s) 601, 604, 649
BsgI GTGCAG 2 cut(s) 351, 608
BshFI GGCC 2 cut(s) 137, 296
BsiSI CCGG 3 cut(s) 28, 432, 494
BslFI GGGAC 1 cut(s) 495
BslI CCNNNNNNNGG 1 cut(s) 379
BsmAI GTCTC 1 cut(s) 455
BsmFI GGGAC 1 cut(s) 495
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 2 cut(s) 137, 296
BspANI GGCC 2 cut(s) 137, 296
BspLI GGNNCC 1 cut(s) 498
BsrI ACTGG 1 cut(s) 85
BssECI CCNNGG 3 cut(s) 297, 514, 558
BssT1I CCWWGG 2 cut(s) 514, 558
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 1 cut(s) 351
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 1 cut(s) 67
BstF5I GGATG 1 cut(s) 307
BstMAI GTCTC 1 cut(s) 455
BstMWI GCNNNNNNNGC 3 cut(s) 117, 134, 601
BstNI CCWGG 1 cut(s) 228
BstSCI CCNGG 3 cut(s) 27, 226, 492
BstV1I GCAGC 3 cut(s) 601, 604, 649
BstV2I GAAGAC 1 cut(s) 185
BsuRI GGCC 2 cut(s) 137, 296
BtsCI GGATG 1 cut(s) 307
BtsIMutI CAGTG 2 cut(s) 57, 78
Cac8I GCNNGC 1 cut(s) 55
CaiI CAGNNNCTG 1 cut(s) 598
CseI GACGC 1 cut(s) 84
CviAII CATG 2 cut(s) 311, 485
CviJI RGCY 7 cut(s) 137, 147, 296, 378, 499, 595, 640
CviKI_1 RGCY 7 cut(s) 137, 147, 296, 378, 499, 595, 640
DdeI CTNAG 1 cut(s) 67
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Eco130I CCWWGG 2 cut(s) 514, 558
Eco57I CTGAAG 1 cut(s) 684
EcoRII CCWGG 1 cut(s) 226
EcoT14I CCWWGG 2 cut(s) 514, 558
EcoT22I ATGCAT 1 cut(s) 287
ErhI CCWWGG 2 cut(s) 514, 558
FaeI CATG 2 cut(s) 314, 488
FaiI YATR 8 cut(s) 218, 312, 414, 416, 486, 620, 643, 727
FaqI GGGAC 1 cut(s) 495
FatI CATG 2 cut(s) 310, 484
Fnu4HI GCNGC 3 cut(s) 590, 593, 638
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 3 cut(s) 590, 593, 638
FspBI CTAG 2 cut(s) 150, 336
GluI GCNGC 3 cut(s) 590, 593, 638
HaeIII GGCC 2 cut(s) 137, 296
HapII CCGG 3 cut(s) 28, 432, 494
HgaI GACGC 1 cut(s) 84
Hin1II CATG 2 cut(s) 314, 488
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 2 cut(s) 306, 362
HpaII CCGG 3 cut(s) 28, 432, 494
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 3 cut(s) 8, 25, 610
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 3 cut(s) 160, 190, 712
Hpy8I GTNNAC 3 cut(s) 8, 25, 610
HpyAV CCTTC 3 cut(s) 139, 499, 664
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 5 cut(s) 98, 285, 368, 589, 699
HpyF10VI GCNNNNNNNGC 3 cut(s) 117, 134, 601
HpyF3I CTNAG 1 cut(s) 67
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 2 cut(s) 314, 488
LmnI GCTCC 1 cut(s) 496
LpnPI CCDG 7 cut(s) 41, 66, 87, 213, 240, 445, 507
Lsp1109I GCAGC 3 cut(s) 601, 604, 649
LweI GCATC 1 cut(s) 40
MaeI CTAG 2 cut(s) 150, 336
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 1 cut(s) 157
MboII GAAGA 5 cut(s) 190, 368, 418, 461, 482
MluCI AATT 7 cut(s) 173, 207, 241, 257, 273, 290, 384
MlyI GAGTC 1 cut(s) 371
MmeI TCCRAC 2 cut(s) 52, 426
MnlI CCTC 4 cut(s) 292, 352, 428, 567
Mph1103I ATGCAT 1 cut(s) 287
MseI TTAA 2 cut(s) 210, 288
MspI CCGG 3 cut(s) 28, 432, 494
MspR9I CCNGG 3 cut(s) 29, 228, 494
Mva1269I GAATGC 1 cut(s) 111
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 3 cut(s) 117, 134, 601
NciI CCSGG 2 cut(s) 29, 494
NlaIII CATG 2 cut(s) 314, 488
NlaIV GGNNCC 1 cut(s) 498
NmeAIII GCCGAG 1 cut(s) 322
NmuCI GTSAC 1 cut(s) 157
NsiI ATGCAT 1 cut(s) 287
PctI GAATGC 1 cut(s) 111
PfeI GAWTC 1 cut(s) 306
PkrI GCNGC 3 cut(s) 591, 594, 639
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
PshBI ATTAAT 1 cut(s) 210
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 1 cut(s) 498
PsrI GAACNNNNNNTAC 2 cut(s) 331, 363
PstNI CAGNNNCTG 1 cut(s) 598
SaqAI TTAA 2 cut(s) 210, 288
SatI GCNGC 3 cut(s) 590, 593, 638
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 3 cut(s) 29, 228, 494
SetI ASST 5 cut(s) 13, 149, 380, 597, 675
SfaNI GCATC 1 cut(s) 40
SmlI CTYRAG 2 cut(s) 190, 712
SmoI CTYRAG 2 cut(s) 190, 712
Sse9I AATT 7 cut(s) 173, 207, 241, 257, 273, 290, 384
SspI AATATT 1 cut(s) 707
SspMI CTAG 2 cut(s) 150, 336
StyD4I CCNGG 3 cut(s) 27, 226, 492
StyI CCWWGG 2 cut(s) 514, 558
TaaI ACNGT 1 cut(s) 61
TaiI ACGT 1 cut(s) 13
TaqI TCGA 1 cut(s) 579
TasI AATT 7 cut(s) 173, 207, 241, 257, 273, 290, 384
TfiI GAWTC 1 cut(s) 306
Tru1I TTAA 2 cut(s) 210, 288
Tru9I TTAA 2 cut(s) 210, 288
TscAI CASTG 2 cut(s) 64, 85
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 3 cut(s) 589, 592, 637
Tsp45I GTSAC 1 cut(s) 157
TspGWI ACGGA 1 cut(s) 362
TspRI CASTG 2 cut(s) 64, 85
VspI ATTAAT 1 cut(s) 210
XapI RAATTY 2 cut(s) 257, 384
XspI CTAG 2 cut(s) 150, 336
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.