RLG00000001530
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000615
Physical Location & Seq
Reverse (-)
17118676 .. 17121294
2619 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001530

Sequence Viewer

Length: 1008 bp
ATGGGTGGAAGTTCAATTGATGATGACTGGGAGCTTCCCTTTTCCAATGCTGCTCGCACTGTGGTCTTAGTTGGACGCACTGGTAATGGAAAAAGTGCAACAGGCAACAGCATTCTTGGCAAAAAAGCTTTCAATTCTAAGCGTAGCTCTAATGGTGTCACGAGCACTTGTGAATTAAAGACTGCTATCTTGAGAGATGGACAGCAAGTTAATGTTATAGACACTCCTGGTCTTTTTGATTATTCTGCCAAATCAGACTTTATTGGCAAAGAAATTGTCAAATGCATTAATTTGGCCAAGGATGGAATCCATGCTGTTCTTGTGGTTTTCTCAACTAGAACTCGCTTTTCACAAGAAGAGGAGTCTGCAATCCTTAGCTTGCAAACTTTGTTTGGAAGTAAAATCTTTGACTATATGATTGTTGTCTTTACGGGAGGAGATGACTTTGAAGAAAATGATGAGACTTTGGAAGATTATTTGGGCCGTGATTGCCCGGACCCTTTAAAGGAAATCCTTGGTCTGTGTGGAAATCGTCGTGTGCTTTTTGATAACAAGACTAAGGATGAAAGCAAGAGGGTCGAACAAGTGCAGCAGCTTCTCTCGCTTGTAAACTCGGTTATAGCACAGAATGGTGGCCGGCCATACACGGATGAGATATTTGCTGAAGTTAAGAAAGGGGCTATGAAACTTCGTGATCAACAAGAAGAGGTTGCTTCTTTGAAGGGGTATTCAAAAAGTGAAATATCTCATTTGAATGAGCAGATGCAGCTTGCACATGATCTGCAGCTTAAACGAATTACTGAGATGGTTGAGTTAAAGATGAGAGAAACAACTATGATGCTTGAACAAAAGTTAGCAGATGAACATGCTGCACGACTAAAAGCAGAAGAGACTGCCCAAGAGGCTCAACAAAGGTCTGAGGATGAAATCCGAAAGCTTAGAGACGATCTACAAAAAGCAGAGGAGGAGCTCCGGAAAAGAGTCGAAAGCAAGTGTGCTATTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

336

Amino Acids

37.56

Weight (kDa)

5.2

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 19 - 233 1.1e-83 AIG1 family
MMR_HSR1 PF01926 20 - 121 3.1e-09 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 972
AcoI YGGCCR 3 cut(s) 294, 634, 638
AcuI CTGAAG 1 cut(s) 684
AfiI CCNNNNNNNGG 1 cut(s) 505
AgsI TTSAA 7 cut(s) 15, 133, 449, 721, 732, 754, 845
AjnI CCWGG 1 cut(s) 226
AluBI AGCT 9 cut(s) 34, 128, 147, 378, 595, 769, 787, 937, 970
AluI AGCT 9 cut(s) 34, 128, 147, 378, 595, 769, 787, 937, 970
Alw21I GWGCWC 2 cut(s) 167, 972
Alw26I GTCTC 3 cut(s) 455, 884, 936
Aor13HI TCCGGA 1 cut(s) 972
AoxI GGCC 4 cut(s) 294, 481, 634, 638
ApeKI GCWGC 6 cut(s) 50, 589, 592, 766, 784, 869
ArsI GACNNNNNNTTYG 2 cut(s) 261, 293
AseI ATTAAT 1 cut(s) 288
AspS9I GGNCC 2 cut(s) 481, 496
AsuC2I CCSGG 1 cut(s) 494
AvaII GGWCC 1 cut(s) 496
BalI TGGCCA 1 cut(s) 296
BanII GRGCYC 1 cut(s) 972
BauI CACGAG 1 cut(s) 160
Bbv12I GWGCWC 2 cut(s) 167, 972
BbvI GCAGC 6 cut(s) 37, 601, 604, 778, 796, 856
BccI CCATC 3 cut(s) 191, 296, 799
BceAI ACGGC 1 cut(s) 468
BcgI CGANNNNNNTGC 2 cut(s) 559, 593
BciT130I CCWGG 1 cut(s) 228
BclI TGATCA 1 cut(s) 694
BcnI CCSGG 1 cut(s) 494
BcoDI GTCTC 3 cut(s) 455, 884, 936
BfaI CTAG 1 cut(s) 336
BfmI CTRYAG 1 cut(s) 782
BglI GCCNNNNNGGC 1 cut(s) 902
BisI GCNGC 6 cut(s) 51, 590, 593, 767, 785, 870
BlsI GCNGC 6 cut(s) 52, 591, 594, 768, 786, 871
Bme1390I CCNGG 2 cut(s) 228, 494
Bme18I GGWCC 1 cut(s) 496
BmgT120I GGNCC 2 cut(s) 481, 496
BmiI GGNNCC 1 cut(s) 498
BmrFI CCNGG 2 cut(s) 228, 494
BmrI ACTGGG 1 cut(s) 37
BmsI GCATC 2 cut(s) 753, 828
BmuI ACTGGG 1 cut(s) 37
Bpu10I CCTNAGC 1 cut(s) 374
BpuEI CTTGAG 1 cut(s) 211
BpuMI CCSGG 1 cut(s) 494
BsaJI CCNNGG 2 cut(s) 297, 514
BsaWI WCCGGW 1 cut(s) 972
Bsc4I CCNNNNNNNGG 1 cut(s) 505
Bse118I RCCGGY 1 cut(s) 636
Bse1I ACTGG 2 cut(s) 32, 85
BseAI TCCGGA 1 cut(s) 972
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 2 cut(s) 297, 514
BseGI GGATG 4 cut(s) 307, 568, 655, 928
BseLI CCNNNNNNNGG 1 cut(s) 505
BseMII CTCAG 2 cut(s) 792, 909
BseNI ACTGG 2 cut(s) 32, 85
BseRI GAGGAG 4 cut(s) 374, 450, 977, 980
BseXI GCAGC 6 cut(s) 37, 601, 604, 778, 796, 856
BsgI GTGCAG 2 cut(s) 608, 855
BshFI GGCC 4 cut(s) 296, 483, 636, 640
BsiHKAI GWGCWC 2 cut(s) 167, 972
BsiSI CCGG 3 cut(s) 494, 637, 973
BslI CCNNNNNNNGG 1 cut(s) 505
BsmAI GTCTC 3 cut(s) 455, 884, 936
BsmBI CGTCTC 1 cut(s) 936
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 4 cut(s) 296, 483, 636, 640
Bsp1286I GDGCHC 2 cut(s) 167, 972
Bsp13I TCCGGA 1 cut(s) 972
Bsp143I GATC 3 cut(s) 694, 778, 946
BspANI GGCC 4 cut(s) 296, 483, 636, 640
BspCNI CTCAG 2 cut(s) 793, 910
BspEI TCCGGA 1 cut(s) 972
BspLI GGNNCC 1 cut(s) 498
BspMAI CTGCAG 1 cut(s) 786
BsrFI RCCGGY 1 cut(s) 636
BsrI ACTGG 2 cut(s) 32, 85
BssAI RCCGGY 1 cut(s) 636
BssECI CCNNGG 2 cut(s) 297, 514
BssMI GATC 3 cut(s) 694, 778, 946
BssSI CACGAG 1 cut(s) 160
BssT1I CCWWGG 2 cut(s) 297, 514
Bst2BI CACGAG 1 cut(s) 160
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 3 cut(s) 351, 699, 882
BstC8I GCNNGC 4 cut(s) 55, 380, 638, 771
BstDEI CTNAG 7 cut(s) 67, 138, 374, 558, 801, 918, 938
BstF5I GGATG 4 cut(s) 307, 568, 655, 928
BstKTI GATC 3 cut(s) 697, 781, 949
BstMAI GTCTC 3 cut(s) 455, 884, 936
BstMBI GATC 3 cut(s) 694, 778, 946
BstMWI GCNNNNNNNGC 5 cut(s) 117, 489, 601, 766, 902
BstNI CCWGG 1 cut(s) 228
BstNSI RCATGY 1 cut(s) 869
BstSCI CCNGG 2 cut(s) 226, 492
BstSFI CTRYAG 1 cut(s) 782
BstV1I GCAGC 6 cut(s) 37, 601, 604, 778, 796, 856
BsuRI GGCC 4 cut(s) 296, 483, 636, 640
BtsCI GGATG 4 cut(s) 307, 568, 655, 928
BtsIMutI CAGTG 2 cut(s) 57, 78
Cac8I GCNNGC 4 cut(s) 55, 380, 638, 771
Cfr10I RCCGGY 1 cut(s) 636
Cfr13I GGNCC 2 cut(s) 481, 496
CseI GACGC 1 cut(s) 84
CviAII CATG 3 cut(s) 311, 776, 866
DdeI CTNAG 7 cut(s) 67, 138, 374, 558, 801, 918, 938
DpnI GATC 3 cut(s) 696, 780, 948
DpnII GATC 3 cut(s) 694, 778, 946
DraI TTTAAA 1 cut(s) 504
EaeI YGGCCR 3 cut(s) 294, 634, 638
Eam1104I CTCTTC 3 cut(s) 351, 699, 882
EarI CTCTTC 3 cut(s) 351, 699, 882
Ecl136II GAGCTC 1 cut(s) 970
Eco130I CCWWGG 2 cut(s) 297, 514
Eco24I GRGCYC 1 cut(s) 972
Eco47I GGWCC 1 cut(s) 496
Eco53kI GAGCTC 1 cut(s) 970
Eco57I CTGAAG 1 cut(s) 684
EcoICRI GAGCTC 1 cut(s) 970
EcoRII CCWGG 1 cut(s) 226
EcoT14I CCWWGG 2 cut(s) 297, 514
EcoT22I ATGCAT 1 cut(s) 287
EcoT38I GRGCYC 1 cut(s) 972
ErhI CCWWGG 2 cut(s) 297, 514
Esp3I CGTCTC 1 cut(s) 936
FaeI CATG 3 cut(s) 314, 779, 869
FatI CATG 3 cut(s) 310, 775, 865
FbaI TGATCA 1 cut(s) 694
Fnu4HI GCNGC 6 cut(s) 51, 590, 593, 767, 785, 870
FokI GGATG 4 cut(s) 314, 575, 662, 935
FriOI GRGCYC 1 cut(s) 972
FseI GGCCGGCC 1 cut(s) 640
Fsp4HI GCNGC 6 cut(s) 51, 590, 593, 767, 785, 870
FspBI CTAG 1 cut(s) 336
GluI GCNGC 6 cut(s) 51, 590, 593, 767, 785, 870
HaeIII GGCC 4 cut(s) 296, 483, 636, 640
HapII CCGG 3 cut(s) 494, 637, 973
HgaI GACGC 1 cut(s) 84
Hin1II CATG 3 cut(s) 314, 779, 869
HindIII AAGCTT 2 cut(s) 126, 935
HinfI GANTC 3 cut(s) 306, 362, 981
HpaII CCGG 3 cut(s) 494, 637, 973
Hpy166II GTNNAC 1 cut(s) 610
Hpy188I TCNGA 3 cut(s) 256, 919, 932
Hpy188III TCNNGA 4 cut(s) 160, 190, 692, 973
Hpy8I GTNNAC 1 cut(s) 610
Hpy99I CGWCG 1 cut(s) 537
HpyAV CCTTC 1 cut(s) 715
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 9 cut(s) 98, 285, 368, 382, 589, 766, 773, 784, 872
HpyF10VI GCNNNNNNNGC 5 cut(s) 117, 489, 601, 766, 902
HpyF3I CTNAG 7 cut(s) 67, 138, 374, 558, 801, 918, 938
Hsp92II CATG 3 cut(s) 314, 779, 869
Kpn2I TCCGGA 1 cut(s) 972
KroI GCCGGC 1 cut(s) 636
KroNI GCCGGC 1 cut(s) 638
Ksp22I TGATCA 1 cut(s) 694
Kzo9I GATC 3 cut(s) 694, 778, 946
LmnI GCTCC 3 cut(s) 31, 967, 975
LpnPI CCDG 8 cut(s) 13, 66, 87, 213, 240, 507, 650, 986
Lsp1109I GCAGC 6 cut(s) 37, 601, 604, 778, 796, 856
LweI GCATC 2 cut(s) 753, 828
MaeI CTAG 1 cut(s) 336
MaeIII GTNAC 1 cut(s) 157
MalI GATC 3 cut(s) 696, 780, 948
MboI GATC 3 cut(s) 694, 778, 946
MboII GAAGA 5 cut(s) 368, 461, 482, 716, 899
MfeI CAATTG 1 cut(s) 15
MhlI GDGCHC 2 cut(s) 167, 972
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 6 cut(s) 15, 133, 173, 273, 289, 795
MluNI TGGCCA 1 cut(s) 296
MlyI GAGTC 2 cut(s) 371, 990
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 8 cut(s) 352, 428, 567, 700, 895, 913, 955, 958
Mox20I TGGCCA 1 cut(s) 296
Mph1103I ATGCAT 1 cut(s) 287
MroI TCCGGA 1 cut(s) 972
MroNI GCCGGC 1 cut(s) 636
MscI TGGCCA 1 cut(s) 296
MseI TTAA 8 cut(s) 176, 210, 288, 503, 669, 789, 815, 1006
MslI CAYNNNNRTG 1 cut(s) 753
Msp20I TGGCCA 1 cut(s) 296
MspI CCGG 3 cut(s) 494, 637, 973
MspR9I CCNGG 2 cut(s) 228, 494
MunI CAATTG 1 cut(s) 15
Mva1269I GAATGC 1 cut(s) 111
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 5 cut(s) 117, 489, 601, 766, 902
NaeI GCCGGC 1 cut(s) 638
NciI CCSGG 1 cut(s) 494
NdeII GATC 3 cut(s) 694, 778, 946
NgoMIV GCCGGC 1 cut(s) 636
NlaIII CATG 3 cut(s) 314, 779, 869
NlaIV GGNNCC 1 cut(s) 498
NmuCI GTSAC 1 cut(s) 157
NsiI ATGCAT 1 cut(s) 287
NspI RCATGY 1 cut(s) 869
PctI GAATGC 1 cut(s) 111
PdiI GCCGGC 1 cut(s) 638
PfeI GAWTC 1 cut(s) 306
PkrI GCNGC 6 cut(s) 52, 591, 594, 768, 786, 871
PleI GAGTC 2 cut(s) 370, 989
PpsI GAGTC 2 cut(s) 370, 989
PshBI ATTAAT 1 cut(s) 288
Psp124BI GAGCTC 1 cut(s) 972
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 1 cut(s) 498
PspPI GGNCC 2 cut(s) 481, 496
PstI CTGCAG 1 cut(s) 786
RigI GGCCGGCC 1 cut(s) 640
RseI CAYNNNNRTG 1 cut(s) 753
SacI GAGCTC 1 cut(s) 972
SaqAI TTAA 8 cut(s) 176, 210, 288, 503, 669, 789, 815, 1006
SatI GCNGC 6 cut(s) 51, 590, 593, 767, 785, 870
Sau3AI GATC 3 cut(s) 694, 778, 946
Sau96I GGNCC 2 cut(s) 481, 496
SchI GAGTC 2 cut(s) 371, 990
ScrFI CCNGG 2 cut(s) 228, 494
SduI GDGCHC 2 cut(s) 167, 972
SfaNI GCATC 2 cut(s) 753, 828
SfcI CTRYAG 1 cut(s) 782
SinI GGWCC 1 cut(s) 496
SmiMI CAYNNNNRTG 1 cut(s) 753
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
Sse9I AATT 6 cut(s) 15, 133, 173, 273, 289, 795
SspMI CTAG 1 cut(s) 336
SstI GAGCTC 1 cut(s) 972
StyD4I CCNGG 2 cut(s) 226, 492
StyI CCWWGG 2 cut(s) 297, 514
TaaI ACNGT 1 cut(s) 61
TaqI TCGA 2 cut(s) 579, 984
TasI AATT 6 cut(s) 15, 133, 173, 273, 289, 795
TfiI GAWTC 1 cut(s) 306
Tru1I TTAA 8 cut(s) 176, 210, 288, 503, 669, 789, 815, 1006
Tru9I TTAA 8 cut(s) 176, 210, 288, 503, 669, 789, 815, 1006
TscAI CASTG 2 cut(s) 64, 85
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 6 cut(s) 50, 589, 592, 766, 784, 869
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 4 cut(s) 579, 698, 876, 939
TspGWI ACGGA 1 cut(s) 662
TspRI CASTG 2 cut(s) 64, 85
VpaK11BI GGWCC 1 cut(s) 496
VspI ATTAAT 1 cut(s) 288
XceI RCATGY 1 cut(s) 869
XspI CTAG 1 cut(s) 336
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.