RchiOBHm_Chr7g0229381
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000615
Physical Location & Seq
Forward (+)
52897872 .. 52901681
3810 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20546

Sequence Viewer

Length: 615 bp
ATGATGGGTAGAAGTTCAATTGATGATGACTGGGAGCTTCCCTTTTCTAATGCTGCTCACACTGTGGTCTTAGTTGGACGCACTAGTAATGGAAAAAGTGCAACAGGCAACAGCATTCTTGGCAAAAAATCCTTCAGTTACAAGCGTAGCTCTAATGGTGTCATGAGCAATTGTGAATTGAAGACTGCTATCTTGAGAGATGGACAAAAAGTTAATGTCATAGGCAATCCTGGTCTTTTTGAATATTCTGCCAGATCAAACTTTATTGGCAAAGAAATTGTCAAATGCATTAGTTTGGCTAAGGATGGGATCCATGCTGTTCTTGTGGACTTGTGGTTTTCTCAACTAGACCTTGCTTTTCACAAGAAGAGGAAAGAAAATGATGAGACTTTGGAAGATTATTTGGGCCGTGATTGCCCGGAGCTTTTAAAGATTTGTTTCCAAATGAGATCAAACTCAGTGAAAATGCTTCTCCTCTCTAAACTGAGACAGTTCTTGGGATCTCCTACCTGTTCATTGCTTACATCAAATGTCAAATGTCAAATGTGTATTACCACTTTACAAGAAATGTTAGTGTCATTGTCTTTATTAATGATGTGTGGTGATATAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

204

Amino Acids

22.7

Weight (kDa)

8.91

Isoelectric Point (pI)

34.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 21 - 112 4.2e-31 AIG1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 304, 317, 508
AcuI CTGAAG 1 cut(s) 118
AdeI CACNNNGTG 1 cut(s) 64
AgsI TTSAA 3 cut(s) 18, 181, 242
AhlI ACTAGT 1 cut(s) 83
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 3 cut(s) 37, 150, 424
AluI AGCT 3 cut(s) 37, 150, 424
Alw26I GTCTC 2 cut(s) 380, 481
AlwI GGATC 3 cut(s) 304, 317, 508
AoxI GGCC 1 cut(s) 406
ApeKI GCWGC 1 cut(s) 53
ArsI GACNNNNNNTTYG 2 cut(s) 264, 296
AseI ATTAAT 1 cut(s) 590
AspS9I GGNCC 1 cut(s) 406
AsuC2I CCSGG 1 cut(s) 419
AsuHPI GGTGA 1 cut(s) 614
BamHI GGATCC 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 40
BccI CCATC 2 cut(s) 194, 299
BceAI ACGGC 1 cut(s) 393
BciT130I CCWGG 1 cut(s) 231
BcnI CCSGG 1 cut(s) 419
BcoDI GTCTC 2 cut(s) 380, 481
BcuI ACTAGT 1 cut(s) 83
BfaI CTAG 2 cut(s) 84, 347
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
Bme1390I CCNGG 2 cut(s) 231, 419
BmgT120I GGNCC 1 cut(s) 406
BmiI GGNNCC 1 cut(s) 311
BmrFI CCNGG 2 cut(s) 231, 419
BmrI ACTGGG 1 cut(s) 40
BmuI ACTGGG 1 cut(s) 40
BpiI GAAGAC 1 cut(s) 188
Bpu10I CCTNAGC 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 214
BpuMI CCSGG 1 cut(s) 419
Bse1I ACTGG 1 cut(s) 35
Bse3DI GCAATG 1 cut(s) 515
BseBI CCWGG 1 cut(s) 231
BseGI GGATG 1 cut(s) 310
BseMI GCAATG 1 cut(s) 515
BseMII CTCAG 2 cut(s) 471, 476
BseNI ACTGG 1 cut(s) 35
BseRI GAGGAG 1 cut(s) 464
BseXI GCAGC 1 cut(s) 40
BshFI GGCC 1 cut(s) 408
BsiSI CCGG 1 cut(s) 419
BsmAI GTCTC 2 cut(s) 380, 481
BsmI GAATGC 1 cut(s) 114
BsnI GGCC 1 cut(s) 408
Bsp143I GATC 4 cut(s) 254, 309, 449, 500
BspANI GGCC 1 cut(s) 408
BspCNI CTCAG 2 cut(s) 470, 477
BspHI TCATGA 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 311
BspPI GGATC 3 cut(s) 304, 317, 508
BsrDI GCAATG 1 cut(s) 515
BsrI ACTGG 1 cut(s) 35
BssMI GATC 4 cut(s) 254, 309, 449, 500
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 2 cut(s) 64, 492
Bst6I CTCTTC 1 cut(s) 362
BstDEI CTNAG 4 cut(s) 70, 300, 457, 485
BstF5I GGATG 1 cut(s) 310
BstKTI GATC 4 cut(s) 257, 312, 452, 503
BstMAI GTCTC 2 cut(s) 380, 481
BstMBI GATC 4 cut(s) 254, 309, 449, 500
BstMWI GCNNNNNNNGC 2 cut(s) 120, 414
BstNI CCWGG 1 cut(s) 231
BstSCI CCNGG 2 cut(s) 229, 417
BstV1I GCAGC 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 188
BstX2I RGATCY 2 cut(s) 309, 500
BstYI RGATCY 2 cut(s) 309, 500
BsuRI GGCC 1 cut(s) 408
BtsCI GGATG 1 cut(s) 310
BtsIMutI CAGTG 2 cut(s) 60, 465
CciI TCATGA 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 406
CseI GACGC 1 cut(s) 87
CviAII CATG 2 cut(s) 163, 314
CviJI RGCY 5 cut(s) 37, 150, 299, 408, 424
CviKI_1 RGCY 5 cut(s) 37, 150, 299, 408, 424
DdeI CTNAG 4 cut(s) 70, 300, 457, 485
DpnI GATC 4 cut(s) 256, 311, 451, 502
DpnII GATC 4 cut(s) 254, 309, 449, 500
DraI TTTAAA 1 cut(s) 429
DraIII CACNNNGTG 1 cut(s) 64
Eam1104I CTCTTC 1 cut(s) 362
EarI CTCTTC 1 cut(s) 362
Eco57I CTGAAG 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 229
EcoT22I ATGCAT 1 cut(s) 290
FaeI CATG 2 cut(s) 166, 317
FaiI YATR 4 cut(s) 164, 221, 315, 608
FatI CATG 2 cut(s) 162, 313
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 1 cut(s) 317
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 2 cut(s) 84, 347
GluI GCNGC 1 cut(s) 54
HaeIII GGCC 1 cut(s) 408
HapII CCGG 1 cut(s) 419
HgaI GACGC 1 cut(s) 87
Hin1II CATG 2 cut(s) 166, 317
HpaII CCGG 1 cut(s) 419
HphI GGTGA 1 cut(s) 614
Hpy166II GTNNAC 1 cut(s) 328
Hpy188III TCNNGA 2 cut(s) 163, 193
Hpy8I GTNNAC 1 cut(s) 328
HpyAV CCTTC 1 cut(s) 142
HpyCH4III ACNGT 2 cut(s) 64, 492
HpyCH4V TGCA 2 cut(s) 101, 288
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 414
HpyF3I CTNAG 4 cut(s) 70, 300, 457, 485
Hsp92II CATG 2 cut(s) 166, 317
Kzo9I GATC 4 cut(s) 254, 309, 449, 500
LmnI GCTCC 2 cut(s) 34, 421
LpnPI CCDG 7 cut(s) 16, 90, 216, 243, 265, 432, 523
Lsp1109I GCAGC 1 cut(s) 40
MaeI CTAG 2 cut(s) 84, 347
MaeIII GTNAC 1 cut(s) 137
MalI GATC 4 cut(s) 256, 311, 451, 502
MboI GATC 4 cut(s) 254, 309, 449, 500
MboII GAAGA 3 cut(s) 193, 379, 407
MfeI CAATTG 2 cut(s) 18, 169
MflI RGATCY 2 cut(s) 309, 500
MluCI AATT 4 cut(s) 18, 169, 176, 276
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 2 cut(s) 363, 485
Mph1103I ATGCAT 1 cut(s) 290
MseI TTAA 3 cut(s) 213, 428, 590
MspI CCGG 1 cut(s) 419
MspR9I CCNGG 2 cut(s) 231, 419
MunI CAATTG 2 cut(s) 18, 169
Mva1269I GAATGC 1 cut(s) 114
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 120, 414
NciI CCSGG 1 cut(s) 419
NdeII GATC 4 cut(s) 254, 309, 449, 500
NlaIII CATG 2 cut(s) 166, 317
NlaIV GGNNCC 1 cut(s) 311
NsiI ATGCAT 1 cut(s) 290
PagI TCATGA 1 cut(s) 162
PctI GAATGC 1 cut(s) 114
PkrI GCNGC 1 cut(s) 55
PshBI ATTAAT 1 cut(s) 590
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 311
PspPI GGNCC 1 cut(s) 406
PsuI RGATCY 2 cut(s) 309, 500
SaqAI TTAA 3 cut(s) 213, 428, 590
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 4 cut(s) 254, 309, 449, 500
Sau96I GGNCC 1 cut(s) 406
ScrFI CCNGG 2 cut(s) 231, 419
SetI ASST 6 cut(s) 39, 152, 354, 426, 512, 614
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
SpeI ACTAGT 1 cut(s) 83
Sse9I AATT 4 cut(s) 18, 169, 176, 276
SspI AATATT 1 cut(s) 245
SspMI CTAG 2 cut(s) 84, 347
StyD4I CCNGG 2 cut(s) 229, 417
TaaI ACNGT 2 cut(s) 64, 492
TasI AATT 4 cut(s) 18, 169, 176, 276
Tru1I TTAA 3 cut(s) 213, 428, 590
Tru9I TTAA 3 cut(s) 213, 428, 590
TscAI CASTG 2 cut(s) 67, 465
TseI GCWGC 1 cut(s) 53
TspDTI ATGAA 1 cut(s) 504
TspRI CASTG 2 cut(s) 67, 465
VspI ATTAAT 1 cut(s) 590
XspI CTAG 2 cut(s) 84, 347
Zsp2I ATGCAT 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.