RLG00000001913
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000615
Physical Location & Seq
Forward (+)
22937023 .. 22942688
5666 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001913

Sequence Viewer

Length: 1017 bp
ATGATGCTTGAACAAAAGTTAGCAGATGAACATGCTGCACGTCGACTAAGAGCAGAAGAGACTGCCCAAAAGGCTCAACAAAGGTCTGAGGATGAAATCCGAAAGCTTAGAGACGATCTCCAGAAAGCAGAGGAGGAGCTTCGGAAAAGAGTCGAAAGCAAGGAACTTCCCATTTCTAATGCTGCTCGCACTGTGGTCTTAGTTGGACGCACTGGTAATGGAAAAAGTGCAACAGGCAATAACATTCTTGGCAAAAGAGCCTTCACTTCCAAGCGTAGCTCTAGTGGTGTCACGACCACTACTGAATTGAAGACTGCTATCTTGAGAGATGGACAACAAATTAATGTAATAGACACTCCTGAAGAGCAGTCTGCAATCCTCGGCTTGCAAGCTCTATTTGGAAGTAAAATCTTTGACTATATGATTGTTGTCTTTACGGGAGGAGATGAGTTGGAAGAAAATGATGAGACTTTGGAAGATTATTTGGGCCGTGATTGCCCGGAGCCTCTGAAGGAAATCCTTGGTCTGTGTGGAAATCACTGTGTTCTTTTTGATAACAAGACTAAGGATGAAAGCAAGAGGGTCGAACAAGTGCAGCGGCTTCTCTCACTTGTAAACTTGGTTATAGCACAGAATGGTGGGCGGCCATACACAGATGAGATATTTGTTGAAGTGAAGAAAGAGGCTATGAGACTTCGTGATCAACAAGAAGAGGTTGCTTCGAAGGGGTATTCAAAACGAGAAATATCTCATTTGAATGAGCTGATGCAGCATGCACATGATCTGCAGCTTAAACGAATTACTGAGATGATTGAGTTAAAGATGAGAGAGAAAACCACGATGCTTGAACAAAAATTAGCAGATGAAAATGCTGCACGACTAAGAGTAGAAGAGACTGCCCAAAAGGCTCAACAAAGGTCTCAGGATGAAATCCAAAAGCTTAGAGACGATCTACAAGTAGAGAAGCTGAAAAGAGTCTTTATTTGCGACAGACCCAGAGTTTGTGCTATTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

339

Amino Acids

38.6

Weight (kDa)

5.94

Isoelectric Point (pI)

56.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 63 - 121 3.7e-20 AIG1 family
MMR_HSR1 PF01926 64 - 163 5.3e-08 50S ribosome-binding GTPase
AIG1 PF04548 121 - 236 2.7e-33 AIG1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 43
AciI CCGC 2 cut(s) 598, 643
AcoI YGGCCR 1 cut(s) 644
AcuI CTGAAG 2 cut(s) 381, 530
AgsI TTSAA 6 cut(s) 11, 310, 671, 735, 757, 848
AjiI CACGTC 1 cut(s) 41
AluBI AGCT 8 cut(s) 106, 139, 279, 392, 763, 790, 940, 967
AluI AGCT 8 cut(s) 106, 139, 279, 392, 763, 790, 940, 967
Alw26I GTCTC 7 cut(s) 53, 105, 461, 685, 887, 924, 939
AoxI GGCC 2 cut(s) 487, 644
ApeKI GCWGC 6 cut(s) 35, 182, 595, 769, 787, 872
ArsI GACNNNNNNTTYG 2 cut(s) 984, 1016
AseI ATTAAT 1 cut(s) 342
AspS9I GGNCC 1 cut(s) 487
AsuC2I CCSGG 1 cut(s) 500
AsuII TTCGAA 1 cut(s) 722
BbsI GAAGAC 1 cut(s) 317
BbvI GCAGC 6 cut(s) 22, 169, 607, 781, 799, 859
BccI CCATC 1 cut(s) 323
BceAI ACGGC 1 cut(s) 474
BcgI CGANNNNNNTGC 2 cut(s) 565, 599
BclI TGATCA 1 cut(s) 700
BcnI CCSGG 1 cut(s) 500
BcoDI GTCTC 7 cut(s) 53, 105, 461, 685, 887, 924, 939
BfaI CTAG 1 cut(s) 282
BfmI CTRYAG 1 cut(s) 785
BglI GCCNNNNNGGC 2 cut(s) 71, 905
BisI GCNGC 8 cut(s) 36, 183, 596, 599, 644, 770, 788, 873
BlsI GCNGC 8 cut(s) 37, 184, 597, 600, 645, 771, 789, 874
Bme1390I CCNGG 1 cut(s) 500
BmgBI CACGTC 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 487
BmiI GGNNCC 1 cut(s) 504
BmrFI CCNGG 1 cut(s) 500
BmsI GCATC 2 cut(s) 756, 831
BpiI GAAGAC 1 cut(s) 317
BplI GAGNNNNNCTC 2 cut(s) 102, 134
BpmI CTGGAG 1 cut(s) 104
Bpu14I TTCGAA 1 cut(s) 722
BpuEI CTTGAG 1 cut(s) 343
BpuMI CCSGG 1 cut(s) 500
BsaI GGTCTC 1 cut(s) 924
BsaJI CCNNGG 2 cut(s) 379, 520
Bse1I ACTGG 1 cut(s) 217
BseDI CCNNGG 2 cut(s) 379, 520
BseGI GGATG 3 cut(s) 97, 574, 931
BseMII CTCAG 3 cut(s) 78, 795, 935
BseNI ACTGG 1 cut(s) 217
BseRI GAGGAG 3 cut(s) 146, 149, 456
BseXI GCAGC 6 cut(s) 22, 169, 607, 781, 799, 859
BsgI GTGCAG 3 cut(s) 21, 614, 858
BshFI GGCC 2 cut(s) 489, 646
BsiSI CCGG 1 cut(s) 500
BsmAI GTCTC 7 cut(s) 53, 105, 461, 685, 887, 924, 939
BsmBI CGTCTC 2 cut(s) 105, 939
BsnI GGCC 2 cut(s) 489, 646
Bso31I GGTCTC 1 cut(s) 924
Bsp119I TTCGAA 1 cut(s) 722
Bsp143I GATC 4 cut(s) 115, 700, 781, 949
BspACI CCGC 2 cut(s) 598, 643
BspANI GGCC 2 cut(s) 489, 646
BspCNI CTCAG 3 cut(s) 79, 796, 934
BspLI GGNNCC 1 cut(s) 504
BspMAI CTGCAG 1 cut(s) 789
BspQI GCTCTTC 1 cut(s) 357
BspT104I TTCGAA 1 cut(s) 722
BspTNI GGTCTC 1 cut(s) 924
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 2 cut(s) 379, 520
BssMI GATC 4 cut(s) 115, 700, 781, 949
BssT1I CCWWGG 1 cut(s) 520
Bst4CI ACNGT 2 cut(s) 193, 542
Bst6I CTCTTC 4 cut(s) 51, 357, 705, 885
BstBI TTCGAA 1 cut(s) 722
BstC8I GCNNGC 4 cut(s) 187, 386, 390, 774
BstDEI CTNAG 9 cut(s) 47, 87, 107, 199, 564, 804, 881, 921, 941
BstF5I GGATG 3 cut(s) 97, 574, 931
BstKTI GATC 4 cut(s) 118, 703, 784, 952
BstMAI GTCTC 7 cut(s) 53, 105, 461, 685, 887, 924, 939
BstMBI GATC 4 cut(s) 115, 700, 781, 949
BstMWI GCNNNNNNNGC 4 cut(s) 71, 495, 769, 905
BstNSI RCATGY 2 cut(s) 35, 776
BstSCI CCNGG 1 cut(s) 498
BstSFI CTRYAG 1 cut(s) 785
BstV1I GCAGC 6 cut(s) 22, 169, 607, 781, 799, 859
BstV2I GAAGAC 1 cut(s) 317
BsuRI GGCC 2 cut(s) 489, 646
BtrI CACGTC 1 cut(s) 41
BtsCI GGATG 3 cut(s) 97, 574, 931
BtsIMutI CAGTG 3 cut(s) 189, 210, 538
Cac8I GCNNGC 4 cut(s) 187, 386, 390, 774
Cfr13I GGNCC 1 cut(s) 487
CseI GACGC 1 cut(s) 216
CspCI CAANNNNNGTGG 2 cut(s) 826, 861
CviAII CATG 3 cut(s) 32, 773, 779
DdeI CTNAG 9 cut(s) 47, 87, 107, 199, 564, 804, 881, 921, 941
DpnI GATC 4 cut(s) 117, 702, 783, 951
DpnII GATC 4 cut(s) 115, 700, 781, 949
EaeI YGGCCR 1 cut(s) 644
Eam1104I CTCTTC 4 cut(s) 51, 357, 705, 885
EarI CTCTTC 4 cut(s) 51, 357, 705, 885
Eco130I CCWWGG 1 cut(s) 520
Eco31I GGTCTC 1 cut(s) 924
Eco57I CTGAAG 2 cut(s) 381, 530
EcoT14I CCWWGG 1 cut(s) 520
ErhI CCWWGG 1 cut(s) 520
Esp3I CGTCTC 2 cut(s) 105, 939
FaeI CATG 3 cut(s) 35, 776, 782
FaiI YATR 8 cut(s) 33, 420, 422, 626, 649, 689, 774, 780
FatI CATG 3 cut(s) 31, 772, 778
FbaI TGATCA 1 cut(s) 700
FblI GTMKAC 1 cut(s) 43
Fnu4HI GCNGC 8 cut(s) 36, 183, 596, 599, 644, 770, 788, 873
FokI GGATG 3 cut(s) 104, 581, 938
Fsp4HI GCNGC 8 cut(s) 36, 183, 596, 599, 644, 770, 788, 873
FspBI CTAG 1 cut(s) 282
GluI GCNGC 8 cut(s) 36, 183, 596, 599, 644, 770, 788, 873
GsuI CTGGAG 1 cut(s) 104
HaeIII GGCC 2 cut(s) 489, 646
HapII CCGG 1 cut(s) 500
HgaI GACGC 1 cut(s) 216
Hin1II CATG 3 cut(s) 35, 776, 782
HincII GTYRAC 1 cut(s) 44
HindII GTYRAC 1 cut(s) 44
HindIII AAGCTT 2 cut(s) 104, 938
HinfI GANTC 2 cut(s) 150, 975
HpaII CCGG 1 cut(s) 500
Hpy166II GTNNAC 2 cut(s) 44, 616
Hpy188I TCNGA 4 cut(s) 88, 101, 144, 510
Hpy188III TCNNGA 6 cut(s) 121, 292, 322, 359, 698, 923
Hpy8I GTNNAC 2 cut(s) 44, 616
Hpy99I CGWCG 1 cut(s) 45
HpyAV CCTTC 3 cut(s) 271, 505, 718
HpyCH4III ACNGT 2 cut(s) 193, 542
HpyCH4IV ACGT 1 cut(s) 40
HpyCH4V TGCA 9 cut(s) 38, 230, 374, 388, 595, 769, 776, 787, 875
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 495, 769, 905
HpyF3I CTNAG 9 cut(s) 47, 87, 107, 199, 564, 804, 881, 921, 941
HpySE526I ACGT 1 cut(s) 40
Hsp92II CATG 3 cut(s) 35, 776, 782
Ksp22I TGATCA 1 cut(s) 700
Kzo9I GATC 4 cut(s) 115, 700, 781, 949
LguI GCTCTTC 1 cut(s) 357
LmnI GCTCC 2 cut(s) 136, 502
LpnPI CCDG 7 cut(s) 134, 198, 219, 372, 513, 908, 1009
Lsp1109I GCAGC 6 cut(s) 22, 169, 607, 781, 799, 859
LweI GCATC 2 cut(s) 756, 831
MaeI CTAG 1 cut(s) 282
MaeII ACGT 1 cut(s) 40
MaeIII GTNAC 1 cut(s) 289
MalI GATC 4 cut(s) 117, 702, 783, 951
MboI GATC 4 cut(s) 115, 700, 781, 949
MboII GAAGA 8 cut(s) 68, 322, 374, 467, 488, 688, 722, 902
MluCI AATT 4 cut(s) 305, 339, 798, 854
MlyI GAGTC 2 cut(s) 159, 984
MmeI TCCRAC 2 cut(s) 184, 432
MnlI CCTC 9 cut(s) 82, 124, 127, 389, 434, 516, 573, 676, 706
MseI TTAA 4 cut(s) 342, 792, 818, 1015
MslI CAYNNNNRTG 2 cut(s) 756, 777
MspA1I CMGCKG 1 cut(s) 598
MspI CCGG 1 cut(s) 500
MspR9I CCNGG 1 cut(s) 500
MwoI GCNNNNNNNGC 4 cut(s) 71, 495, 769, 905
NciI CCSGG 1 cut(s) 500
NdeII GATC 4 cut(s) 115, 700, 781, 949
NlaIII CATG 3 cut(s) 35, 776, 782
NlaIV GGNNCC 1 cut(s) 504
NmeAIII GCCGAG 1 cut(s) 360
NmuCI GTSAC 1 cut(s) 289
NspI RCATGY 2 cut(s) 35, 776
NspV TTCGAA 1 cut(s) 722
PaeI GCATGC 1 cut(s) 776
PciSI GCTCTTC 1 cut(s) 357
PkrI GCNGC 8 cut(s) 37, 184, 597, 600, 645, 771, 789, 874
PleI GAGTC 2 cut(s) 158, 983
PpsI GAGTC 2 cut(s) 158, 983
PshBI ATTAAT 1 cut(s) 342
PspN4I GGNNCC 1 cut(s) 504
PspPI GGNCC 1 cut(s) 487
PstI CTGCAG 1 cut(s) 789
RseI CAYNNNNRTG 2 cut(s) 756, 777
SalI GTCGAC 1 cut(s) 42
SapI GCTCTTC 1 cut(s) 357
SaqAI TTAA 4 cut(s) 342, 792, 818, 1015
SatI GCNGC 8 cut(s) 36, 183, 596, 599, 644, 770, 788, 873
Sau3AI GATC 4 cut(s) 115, 700, 781, 949
Sau96I GGNCC 1 cut(s) 487
SchI GAGTC 2 cut(s) 159, 984
ScrFI CCNGG 1 cut(s) 500
SfaNI GCATC 2 cut(s) 756, 831
SfcI CTRYAG 1 cut(s) 785
SfuI TTCGAA 1 cut(s) 722
SmiMI CAYNNNNRTG 2 cut(s) 756, 777
SmlI CTYRAG 1 cut(s) 322
SmoI CTYRAG 1 cut(s) 322
SphI GCATGC 1 cut(s) 776
Sse9I AATT 4 cut(s) 305, 339, 798, 854
SsiI CCGC 2 cut(s) 598, 643
SspMI CTAG 1 cut(s) 282
StyD4I CCNGG 1 cut(s) 498
StyI CCWWGG 1 cut(s) 520
TaaI ACNGT 2 cut(s) 193, 542
TaiI ACGT 1 cut(s) 43
TaqI TCGA 4 cut(s) 43, 153, 585, 722
TasI AATT 4 cut(s) 305, 339, 798, 854
TauI GCSGC 2 cut(s) 601, 646
Tru1I TTAA 4 cut(s) 342, 792, 818, 1015
Tru9I TTAA 4 cut(s) 342, 792, 818, 1015
TscAI CASTG 3 cut(s) 196, 217, 545
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 6 cut(s) 35, 182, 595, 769, 787, 872
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 5 cut(s) 42, 108, 585, 879, 942
TspRI CASTG 3 cut(s) 196, 217, 545
VspI ATTAAT 1 cut(s) 342
XceI RCATGY 2 cut(s) 35, 776
XmiI GTMKAC 1 cut(s) 43
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.