RchiOBHm_Chr7g0229141
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000615
Physical Location & Seq
Forward (+)
52518611 .. 52521222
2612 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20526

Sequence Viewer

Length: 1014 bp
ATGGGTGGACGTTCGATTGATGACCGGCAACTTCCCTTTTCTAATGCTGCTCGCACTATGGTCTTAGTTGGACGCACTGGTAATGGAAAAAGTGCCACAGGCAACAGCATTCTTGGCAAAAAACCTTTCAATTCCAGGCGTAGCTCTAGTGGGGTCACGACCGCTGCTGAATTGAAGACTACTATCTTGGGAGATGGACAACAAATTAATGTTATAGACACTCCGGGTCTTTTTGATAATTCTGCCAAATCAGACTTTATTAGCAAAGAAATTGCCCAATGCATTAAATTAGCCGAGGATGGGATCCATGCTGTTCTTGTGGTTCTCTCAACTAGAACTCGCTTTACAAAAGAAGAGCAGTCTGCAATCTGTAGCTTGGAAAATCTATTTGGAAGTAAAATCTTTGACTATATGATTGTTGTCTTTACGGGAGGAGATGAGTTGGAAGAAGATGAGACTTTGGAAGATTATTTGGGCCGTGATTGCCCGAAGCCTTTGAAGGAAATCCTTAGTCTGTGTGGAAATCGTTGTGTGCTTTTTGATAACAAGACCAAGGATGAAAGCAAGAGGGTCGAACAAGTGCAGGGGCTCCTCTCACTTGTAGACTCGGTTATAGAACAGAATGGTGGGCGGCCATACACAGATGAGATATTTGCTGAAGCGAAGAAAGGGGCTATGAAACTTCGTGATCAACAAGAAGAGGTTGCTTCGAAGGGGTATTCAAAACAAGAAATAGATCGTTTTAATGAGCAGATGCAGCGTCAATATGATCTGCAGCTTAAACAAATTACTGAGATGCTTGAGTTAAAGATGAGATTGAATACCATGACGCTTGAGCAAAAGTTAGAAGATGAACATGCTGCACGACTAAGAGCAGAAAAGAGTGCCCAAGAGGCTCAACAAAGGTCTGCGCATGAGATCCGAAAGCTTAGTGACGATCTACAAGAAGAGAAGAAGAAAAAAGGCGGAAGCAGTGGAGGTGGAAGCAGCAAAGGCGGCTGTCTTATTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

337

Amino Acids

37.37

Weight (kDa)

5.71

Isoelectric Point (pI)

46.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 19 - 231 1.7e-81 AIG1 family
MMR_HSR1 PF01926 20 - 121 4.1e-09 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 912
AccI GTMKAC 1 cut(s) 603
AciI CCGC 4 cut(s) 162, 631, 966, 996
AclWI GGATC 3 cut(s) 298, 311, 913
AcoI YGGCCR 1 cut(s) 632
AcuI CTGAAG 1 cut(s) 678
AfiI CCNNNNNNNGG 1 cut(s) 300
AgsI TTSAA 5 cut(s) 130, 175, 499, 723, 820
AjnI CCWGG 1 cut(s) 134
AjuI GAANNNNNNNTTGG 2 cut(s) 372, 404
AluBI AGCT 4 cut(s) 144, 375, 778, 928
AluI AGCT 4 cut(s) 144, 375, 778, 928
Alw26I GTCTC 1 cut(s) 449
AlwI GGATC 3 cut(s) 298, 311, 913
AoxI GGCC 2 cut(s) 475, 632
ApeKI GCWGC 6 cut(s) 47, 164, 757, 775, 860, 987
AseI ATTAAT 1 cut(s) 207
AspLEI GCGC 1 cut(s) 913
AspS9I GGNCC 1 cut(s) 475
AsuC2I CCSGG 1 cut(s) 225
AsuII TTCGAA 1 cut(s) 710
BaeGI GKGCMC 1 cut(s) 889
BamHI GGATCC 1 cut(s) 303
BanII GRGCYC 1 cut(s) 591
BbsI GAAGAC 1 cut(s) 182
BbvI GCAGC 6 cut(s) 34, 151, 769, 787, 847, 999
BccI CCATC 2 cut(s) 188, 293
BceAI ACGGC 1 cut(s) 462
BcgI CGANNNNNNTGC 2 cut(s) 553, 587
BciT130I CCWGG 1 cut(s) 136
BclI TGATCA 1 cut(s) 688
BcnI CCSGG 1 cut(s) 225
BcoDI GTCTC 1 cut(s) 449
BfaI CTAG 2 cut(s) 147, 333
BfmI CTRYAG 2 cut(s) 370, 773
BglI GCCNNNNNGGC 1 cut(s) 893
BisI GCNGC 8 cut(s) 48, 165, 632, 758, 776, 861, 988, 997
BlsI GCNGC 8 cut(s) 49, 166, 633, 759, 777, 862, 989, 998
Bme1390I CCNGG 2 cut(s) 136, 225
BmgT120I GGNCC 1 cut(s) 475
BmiI GGNNCC 2 cut(s) 305, 590
BmrFI CCNGG 2 cut(s) 136, 225
BmsI GCATC 2 cut(s) 744, 786
BpiI GAAGAC 1 cut(s) 182
Bpu14I TTCGAA 1 cut(s) 710
BpuEI CTTGAG 2 cut(s) 821, 854
BpuMI CCSGG 1 cut(s) 225
BsaJI CCNNGG 2 cut(s) 294, 552
Bsc4I CCNNNNNNNGG 1 cut(s) 300
Bse118I RCCGGY 1 cut(s) 24
Bse1I ACTGG 1 cut(s) 82
BseBI CCWGG 1 cut(s) 136
BseDI CCNNGG 2 cut(s) 294, 552
BseGI GGATG 2 cut(s) 304, 562
BseLI CCNNNNNNNGG 1 cut(s) 300
BseMII CTCAG 1 cut(s) 783
BseNI ACTGG 1 cut(s) 82
BseRI GAGGAG 2 cut(s) 447, 581
BseSI GKGCMC 1 cut(s) 889
BseXI GCAGC 6 cut(s) 34, 151, 769, 787, 847, 999
BsgI GTGCAG 2 cut(s) 602, 846
Bsh1285I CGRYCG 1 cut(s) 162
BshFI GGCC 2 cut(s) 477, 634
BsiEI CGRYCG 1 cut(s) 162
BsiSI CCGG 2 cut(s) 25, 224
BslI CCNNNNNNNGG 1 cut(s) 300
BsmAI GTCTC 1 cut(s) 449
BsmI GAATGC 1 cut(s) 108
BsnI GGCC 2 cut(s) 477, 634
Bsp119I TTCGAA 1 cut(s) 710
Bsp1286I GDGCHC 2 cut(s) 591, 889
Bsp143I GATC 6 cut(s) 303, 688, 736, 769, 918, 937
BspACI CCGC 4 cut(s) 162, 631, 966, 996
BspANI GGCC 2 cut(s) 477, 634
BspCNI CTCAG 1 cut(s) 784
BspLI GGNNCC 2 cut(s) 305, 590
BspMAI CTGCAG 1 cut(s) 777
BspPI GGATC 3 cut(s) 298, 311, 913
BspQI GCTCTTC 1 cut(s) 348
BspT104I TTCGAA 1 cut(s) 710
BsrFI RCCGGY 1 cut(s) 24
BsrI ACTGG 1 cut(s) 82
BssAI RCCGGY 1 cut(s) 24
BssECI CCNNGG 2 cut(s) 294, 552
BssMI GATC 6 cut(s) 303, 688, 736, 769, 918, 937
BssT1I CCWWGG 1 cut(s) 552
Bst2UI CCWGG 1 cut(s) 136
Bst6I CTCTTC 3 cut(s) 348, 693, 942
BstBI TTCGAA 1 cut(s) 710
BstC8I GCNNGC 1 cut(s) 52
BstDEI CTNAG 5 cut(s) 64, 509, 792, 869, 929
BstF5I GGATG 2 cut(s) 304, 562
BstHHI GCGC 1 cut(s) 913
BstKTI GATC 6 cut(s) 306, 691, 739, 772, 921, 940
BstMAI GTCTC 1 cut(s) 449
BstMBI GATC 6 cut(s) 303, 688, 736, 769, 918, 937
BstMCI CGRYCG 1 cut(s) 162
BstMWI GCNNNNNNNGC 6 cut(s) 114, 483, 757, 893, 993, 996
BstNI CCWGG 1 cut(s) 136
BstNSI RCATGY 1 cut(s) 860
BstSCI CCNGG 2 cut(s) 134, 223
BstSFI CTRYAG 2 cut(s) 370, 773
BstSLI GKGCMC 1 cut(s) 889
BstV1I GCAGC 6 cut(s) 34, 151, 769, 787, 847, 999
BstV2I GAAGAC 1 cut(s) 182
BstX2I RGATCY 2 cut(s) 303, 918
BstYI RGATCY 2 cut(s) 303, 918
BsuRI GGCC 2 cut(s) 477, 634
BtsCI GGATG 2 cut(s) 304, 562
BtsI GCAGTG 1 cut(s) 979
BtsIMutI CAGTG 2 cut(s) 75, 979
Cac8I GCNNGC 1 cut(s) 52
CfoI GCGC 1 cut(s) 913
Cfr10I RCCGGY 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 475
CseI GACGC 3 cut(s) 81, 749, 838
CviAII CATG 4 cut(s) 308, 826, 857, 914
DdeI CTNAG 5 cut(s) 64, 509, 792, 869, 929
DpnI GATC 6 cut(s) 305, 690, 738, 771, 920, 939
DpnII GATC 6 cut(s) 303, 688, 736, 769, 918, 937
EaeI YGGCCR 1 cut(s) 632
Eam1104I CTCTTC 3 cut(s) 348, 693, 942
EarI CTCTTC 3 cut(s) 348, 693, 942
EciI GGCGGA 1 cut(s) 981
Eco130I CCWWGG 1 cut(s) 552
Eco24I GRGCYC 1 cut(s) 591
Eco57I CTGAAG 1 cut(s) 678
EcoRII CCWGG 1 cut(s) 134
EcoT14I CCWWGG 1 cut(s) 552
EcoT22I ATGCAT 1 cut(s) 284
EcoT38I GRGCYC 1 cut(s) 591
ErhI CCWWGG 1 cut(s) 552
FaeI CATG 4 cut(s) 311, 829, 860, 917
FatI CATG 4 cut(s) 307, 825, 856, 913
FbaI TGATCA 1 cut(s) 688
FblI GTMKAC 1 cut(s) 603
Fnu4HI GCNGC 8 cut(s) 48, 165, 632, 758, 776, 861, 988, 997
FokI GGATG 2 cut(s) 311, 569
FriOI GRGCYC 1 cut(s) 591
Fsp4HI GCNGC 8 cut(s) 48, 165, 632, 758, 776, 861, 988, 997
FspBI CTAG 2 cut(s) 147, 333
FspI TGCGCA 1 cut(s) 912
GlaI GCGC 1 cut(s) 912
GluI GCNGC 8 cut(s) 48, 165, 632, 758, 776, 861, 988, 997
HaeIII GGCC 2 cut(s) 477, 634
HapII CCGG 2 cut(s) 25, 224
HgaI GACGC 3 cut(s) 81, 749, 838
HhaI GCGC 1 cut(s) 913
Hin1II CATG 4 cut(s) 311, 829, 860, 917
Hin6I GCGC 1 cut(s) 911
HinP1I GCGC 1 cut(s) 911
HindIII AAGCTT 1 cut(s) 926
HinfI GANTC 1 cut(s) 605
HpaII CCGG 2 cut(s) 25, 224
Hpy166II GTNNAC 2 cut(s) 8, 604
Hpy188I TCNGA 2 cut(s) 253, 923
Hpy188III TCNNGA 2 cut(s) 157, 686
Hpy8I GTNNAC 2 cut(s) 8, 604
HpyAV CCTTC 2 cut(s) 493, 706
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 6 cut(s) 282, 365, 583, 757, 775, 863
HpyF10VI GCNNNNNNNGC 6 cut(s) 114, 483, 757, 893, 993, 996
HpyF3I CTNAG 5 cut(s) 64, 509, 792, 869, 929
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 4 cut(s) 311, 829, 860, 917
HspAI GCGC 1 cut(s) 911
Ksp22I TGATCA 1 cut(s) 688
Kzo9I GATC 6 cut(s) 303, 688, 736, 769, 918, 937
LguI GCTCTTC 1 cut(s) 348
LmnI GCTCC 1 cut(s) 594
LpnPI CCDG 7 cut(s) 38, 63, 84, 121, 148, 237, 569
Lsp1109I GCAGC 6 cut(s) 34, 151, 769, 787, 847, 999
LweI GCATC 2 cut(s) 744, 786
MaeI CTAG 2 cut(s) 147, 333
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 2 cut(s) 154, 932
MalI GATC 6 cut(s) 305, 690, 738, 771, 920, 939
MboI GATC 6 cut(s) 303, 688, 736, 769, 918, 937
MflI RGATCY 2 cut(s) 303, 918
MhlI GDGCHC 2 cut(s) 591, 889
MluCI AATT 7 cut(s) 130, 170, 204, 238, 270, 287, 786
MlyI GAGTC 1 cut(s) 599
MmeI TCCRAC 2 cut(s) 49, 423
MnlI CCTC 7 cut(s) 289, 425, 561, 602, 694, 886, 971
Mph1103I ATGCAT 1 cut(s) 284
MseI TTAA 6 cut(s) 207, 285, 744, 780, 806, 1012
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 2 cut(s) 25, 224
MspR9I CCNGG 2 cut(s) 136, 225
Mva1269I GAATGC 1 cut(s) 108
MvaI CCWGG 1 cut(s) 136
MwoI GCNNNNNNNGC 6 cut(s) 114, 483, 757, 893, 993, 996
NciI CCSGG 1 cut(s) 225
NdeII GATC 6 cut(s) 303, 688, 736, 769, 918, 937
NlaIII CATG 4 cut(s) 311, 829, 860, 917
NlaIV GGNNCC 2 cut(s) 305, 590
NmeAIII GCCGAG 1 cut(s) 319
NmuCI GTSAC 2 cut(s) 154, 932
NsbI TGCGCA 1 cut(s) 912
NsiI ATGCAT 1 cut(s) 284
NspI RCATGY 1 cut(s) 860
NspV TTCGAA 1 cut(s) 710
PciSI GCTCTTC 1 cut(s) 348
PctI GAATGC 1 cut(s) 108
PkrI GCNGC 8 cut(s) 49, 166, 633, 759, 777, 862, 989, 998
PleI GAGTC 1 cut(s) 599
PpsI GAGTC 1 cut(s) 599
PshBI ATTAAT 1 cut(s) 207
Psp6I CCWGG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 134
PspN4I GGNNCC 2 cut(s) 305, 590
PspPI GGNCC 1 cut(s) 475
PsrI GAACNNNNNNTAC 2 cut(s) 328, 360
PstI CTGCAG 1 cut(s) 777
PsuI RGATCY 2 cut(s) 303, 918
SapI GCTCTTC 1 cut(s) 348
SaqAI TTAA 6 cut(s) 207, 285, 744, 780, 806, 1012
SatI GCNGC 8 cut(s) 48, 165, 632, 758, 776, 861, 988, 997
Sau3AI GATC 6 cut(s) 303, 688, 736, 769, 918, 937
Sau96I GGNCC 1 cut(s) 475
SchI GAGTC 1 cut(s) 599
ScrFI CCNGG 2 cut(s) 136, 225
SduI GDGCHC 2 cut(s) 591, 889
SetI ASST 9 cut(s) 13, 127, 146, 377, 705, 780, 908, 930, 982
SfaNI GCATC 2 cut(s) 744, 786
SfcI CTRYAG 2 cut(s) 370, 773
SfuI TTCGAA 1 cut(s) 710
SmlI CTYRAG 2 cut(s) 800, 833
SmoI CTYRAG 2 cut(s) 800, 833
Sse9I AATT 7 cut(s) 130, 170, 204, 238, 270, 287, 786
SsiI CCGC 4 cut(s) 162, 631, 966, 996
SspMI CTAG 2 cut(s) 147, 333
StyD4I CCNGG 2 cut(s) 134, 223
StyI CCWWGG 1 cut(s) 552
TaiI ACGT 1 cut(s) 13
TaqI TCGA 3 cut(s) 14, 573, 710
TasI AATT 7 cut(s) 130, 170, 204, 238, 270, 287, 786
TauI GCSGC 2 cut(s) 634, 999
Tru1I TTAA 6 cut(s) 207, 285, 744, 780, 806, 1012
Tru9I TTAA 6 cut(s) 207, 285, 744, 780, 806, 1012
TscAI CASTG 2 cut(s) 82, 979
TseFI GTSAC 2 cut(s) 154, 932
TseI GCWGC 6 cut(s) 47, 164, 757, 775, 860, 987
Tsp45I GTSAC 2 cut(s) 154, 932
TspDTI ATGAA 3 cut(s) 573, 692, 867
TspRI CASTG 2 cut(s) 82, 979
VspI ATTAAT 1 cut(s) 207
XceI RCATGY 1 cut(s) 860
XmiI GTMKAC 1 cut(s) 603
XspI CTAG 2 cut(s) 147, 333
Zsp2I ATGCAT 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.