Rroxscaffold_3G00232980
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000615
Physical Location & Seq
Forward (+)
18730749 .. 18732588
1840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00232980.1

Sequence Viewer

Length: 537 bp
ATGGGTGGACGTTCAATTGATGTTGCCCGGGAACTTCCCTTTCCTAATACTGCTCGCACTATGGTCTTATTTGGACGCACTGGTAATGGAAAAAGTGCAACAGCCAACAACATTCTTGGCAAAAGAGCCTTCATTTCCAAGCGTAGCTCTAGTGGTGTCACAACCACTACTGAATTGAAGACTGCTATCTTGAGAGATGGACAACAAATTAATGTTATAGACACTCCTGGTCTTTTTGATAATTCTGCCAGATCAGACTTTATTGGCAAAGAAATTGCCCAATGCATTAAATTGGCCGAGGATGGGATCCATGCTATTCTTGTGGTTCTCTCAACTAGAACTCGCTTTACAAAAGAAGAGCAGTCTGCAATCTGTAGCTTGGAAAATCTATTTGGACGTAAAATCTTTGACTATACGATTGTTGTCTTTACGGGAGGAGATGAGCTTGAAGAAAATGATGAGACTTTGGAAGATTATTTGGGCCGTGATTGCCCGGAGCCTTTGAAGGTAAATTTGTTTCTTCAATTTGGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

178

Amino Acids

19.57

Weight (kDa)

5.3

Isoelectric Point (pI)

42.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RsgA_GTPase PF03193 18 - 78 1e-06 RsgA GTPase
AIG1 PF04548 20 - 169 3.8e-56 AIG1 family
MMR_HSR1 PF01926 21 - 123 4.6e-11 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 301, 314
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 1 cut(s) 511
AfiI CCNNNNNNNGG 1 cut(s) 303
AgsI TTSAA 5 cut(s) 15, 178, 449, 505, 524
AjnI CCWGG 1 cut(s) 226
AjuI GAANNNNNNNTTGG 2 cut(s) 375, 407
AluBI AGCT 3 cut(s) 147, 378, 445
AluI AGCT 3 cut(s) 147, 378, 445
Alw26I GTCTC 1 cut(s) 455
AlwI GGATC 2 cut(s) 301, 314
Ama87I CYCGRG 1 cut(s) 27
AoxI GGCC 2 cut(s) 294, 481
ApoI RAATTY 1 cut(s) 511
AseI ATTAAT 1 cut(s) 210
AspS9I GGNCC 1 cut(s) 481
AsuC2I CCSGG 3 cut(s) 28, 29, 494
AvaI CYCGRG 1 cut(s) 27
BamHI GGATCC 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 185
BccI CCATC 2 cut(s) 191, 296
BceAI ACGGC 1 cut(s) 468
BciT130I CCWGG 1 cut(s) 228
BcnI CCSGG 3 cut(s) 28, 29, 494
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 2 cut(s) 150, 336
BfmI CTRYAG 1 cut(s) 373
Bme1390I CCNGG 4 cut(s) 28, 29, 228, 494
BmeT110I CYCGRG 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 481
BmiI GGNNCC 2 cut(s) 308, 498
BmrFI CCNGG 4 cut(s) 28, 29, 228, 494
BpiI GAAGAC 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 211
BpuMI CCSGG 3 cut(s) 28, 29, 494
BsaJI CCNNGG 2 cut(s) 27, 297
Bsc4I CCNNNNNNNGG 1 cut(s) 303
Bse1I ACTGG 1 cut(s) 85
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 2 cut(s) 27, 297
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 1 cut(s) 303
BseNI ACTGG 1 cut(s) 85
BseRI GAGGAG 1 cut(s) 450
BshFI GGCC 2 cut(s) 296, 483
BsiHKCI CYCGRG 1 cut(s) 27
BsiSI CCGG 2 cut(s) 28, 494
BslI CCNNNNNNNGG 1 cut(s) 303
BsmAI GTCTC 1 cut(s) 455
BsnI GGCC 2 cut(s) 296, 483
BsoBI CYCGRG 1 cut(s) 27
Bsp143I GATC 2 cut(s) 251, 306
BspANI GGCC 2 cut(s) 296, 483
BspLI GGNNCC 2 cut(s) 308, 498
BspPI GGATC 2 cut(s) 301, 314
BspQI GCTCTTC 1 cut(s) 351
BsrI ACTGG 1 cut(s) 85
BssECI CCNNGG 2 cut(s) 27, 297
BssMI GATC 2 cut(s) 251, 306
Bst2UI CCWGG 1 cut(s) 228
Bst6I CTCTTC 1 cut(s) 351
BstC8I GCNNGC 1 cut(s) 55
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 2 cut(s) 254, 309
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 2 cut(s) 251, 306
BstMWI GCNNNNNNNGC 1 cut(s) 489
BstNI CCWGG 1 cut(s) 228
BstSCI CCNGG 4 cut(s) 26, 27, 226, 492
BstSFI CTRYAG 1 cut(s) 373
BstV2I GAAGAC 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 306
BstYI RGATCY 1 cut(s) 306
BsuRI GGCC 2 cut(s) 296, 483
BtsCI GGATG 1 cut(s) 307
BtsIMutI CAGTG 1 cut(s) 78
Cac8I GCNNGC 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 481
Cfr9I CCCGGG 1 cut(s) 27
CseI GACGC 1 cut(s) 84
CviAII CATG 2 cut(s) 311, 534
CviJI RGCY 8 cut(s) 104, 128, 147, 296, 378, 445, 483, 499
CviKI_1 RGCY 8 cut(s) 104, 128, 147, 296, 378, 445, 483, 499
DpnI GATC 2 cut(s) 253, 308
DpnII GATC 2 cut(s) 251, 306
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Eco88I CYCGRG 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 226
EcoT22I ATGCAT 1 cut(s) 287
FaeI CATG 2 cut(s) 314, 537
FaiI YATR 5 cut(s) 62, 218, 312, 414, 535
FatI CATG 2 cut(s) 310, 533
FokI GGATG 1 cut(s) 314
FspBI CTAG 2 cut(s) 150, 336
HaeIII GGCC 2 cut(s) 296, 483
HapII CCGG 2 cut(s) 28, 494
HgaI GACGC 1 cut(s) 84
Hin1II CATG 2 cut(s) 314, 537
HpaII CCGG 2 cut(s) 28, 494
Hpy166II GTNNAC 1 cut(s) 8
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 1 cut(s) 190
Hpy8I GTNNAC 1 cut(s) 8
HpyAV CCTTC 2 cut(s) 139, 499
HpyCH4IV ACGT 2 cut(s) 10, 397
HpyCH4V TGCA 3 cut(s) 98, 285, 368
HpyF10VI GCNNNNNNNGC 1 cut(s) 489
HpySE526I ACGT 2 cut(s) 10, 397
Hsp92II CATG 2 cut(s) 314, 537
Kzo9I GATC 2 cut(s) 251, 306
LguI GCTCTTC 1 cut(s) 351
LmnI GCTCC 1 cut(s) 496
LpnPI CCDG 6 cut(s) 41, 66, 213, 240, 262, 507
MaeI CTAG 2 cut(s) 150, 336
MaeII ACGT 2 cut(s) 10, 397
MaeIII GTNAC 1 cut(s) 157
MalI GATC 2 cut(s) 253, 308
MboI GATC 2 cut(s) 251, 306
MboII GAAGA 5 cut(s) 190, 368, 461, 482, 512
MfeI CAATTG 1 cut(s) 15
MflI RGATCY 1 cut(s) 306
MluCI AATT 8 cut(s) 15, 173, 207, 241, 273, 290, 511, 524
MnlI CCTC 2 cut(s) 292, 428
Mph1103I ATGCAT 1 cut(s) 287
MseI TTAA 2 cut(s) 210, 288
MspI CCGG 2 cut(s) 28, 494
MspR9I CCNGG 4 cut(s) 28, 29, 228, 494
MunI CAATTG 1 cut(s) 15
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 489
NciI CCSGG 3 cut(s) 28, 29, 494
NdeII GATC 2 cut(s) 251, 306
NlaIII CATG 2 cut(s) 314, 537
NlaIV GGNNCC 2 cut(s) 308, 498
NmeAIII GCCGAG 1 cut(s) 322
NmuCI GTSAC 1 cut(s) 157
NsiI ATGCAT 1 cut(s) 287
PciSI GCTCTTC 1 cut(s) 351
PshBI ATTAAT 1 cut(s) 210
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 2 cut(s) 308, 498
PspPI GGNCC 1 cut(s) 481
PsrI GAACNNNNNNTAC 2 cut(s) 331, 363
PsuI RGATCY 1 cut(s) 306
SapI GCTCTTC 1 cut(s) 351
SaqAI TTAA 2 cut(s) 210, 288
Sau3AI GATC 2 cut(s) 251, 306
Sau96I GGNCC 1 cut(s) 481
ScrFI CCNGG 4 cut(s) 28, 29, 228, 494
SetI ASST 6 cut(s) 13, 149, 380, 400, 447, 510
SfcI CTRYAG 1 cut(s) 373
SmaI CCCGGG 1 cut(s) 29
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
Sse9I AATT 8 cut(s) 15, 173, 207, 241, 273, 290, 511, 524
SspMI CTAG 2 cut(s) 150, 336
StyD4I CCNGG 4 cut(s) 26, 27, 226, 492
TaiI ACGT 2 cut(s) 13, 400
TasI AATT 8 cut(s) 15, 173, 207, 241, 273, 290, 511, 524
Tru1I TTAA 2 cut(s) 210, 288
Tru9I TTAA 2 cut(s) 210, 288
TscAI CASTG 1 cut(s) 85
TseFI GTSAC 1 cut(s) 157
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 1 cut(s) 121
TspMI CCCGGG 1 cut(s) 27
TspRI CASTG 1 cut(s) 85
VspI ATTAAT 1 cut(s) 210
XapI RAATTY 1 cut(s) 511
XmaI CCCGGG 1 cut(s) 27
XspI CTAG 2 cut(s) 150, 336
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.