Rmu_sc0000271.1_g000002
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000271.1
OG0000615
Physical Location & Seq
Reverse (-)
9002 .. 11664
2663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000271.1_g000002.1.cds

Sequence Viewer

Length: 774 bp
atgggtggacgttcgattgatgaccggcaacttcccttttctaatgttgctcgcactatggtcttagttggacgcactggtaatggaaaaagtgccacaggcaacagcattcttggcaaaaaagctttcaattccaggcgtagctctagtggtgtcacgaccgctgctgaattgaagactactatcttgggagatggacaacaaattaatgttatagacactccgggtctttttgacaattctgccaaatcagactttattagcaaagaaattgcccaatgcattaaattggccgaggatgggatccatgctgttcttgtggttctctcaactagaactcgctttacaaaagaagagcagtctgcaatctgtagcttggaaaatctatttggaagtaaaatctttgactatatgattgttgtctttacgggaggagatgagttggaagaagatgagactttggaagattatttaggccgtgattgcccgaagcctttgaagattgagtcaaacatgagagagaaaaccatgatgcttgaacaaaagttagcagatgaacatgctgcacgactaagagcagaaaagagtgcccaagaggctcaacaaaggtctgcggatcagatccgaaagcttagtgacgatctacaagaagagaagaagaaaagaggcggaagcagtggaggcagcacaagcgctgaaagcggtggaggcagcacaagcagcggaagcggcaccagcggtggaagcaaaaaaggcggctgtcttattctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

257

Amino Acids

27.48

Weight (kDa)

6.23

Isoelectric Point (pI)

42.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 731
AciI CCGC 8 cut(s) 162, 614, 669, 702, 723, 729, 738, 756
AclWI GGATC 4 cut(s) 298, 311, 616, 624
AcoI YGGCCR 1 cut(s) 291
AfeI AGCGCT 1 cut(s) 694
AfiI CCNNNNNNNGG 1 cut(s) 300
AgsI TTSAA 4 cut(s) 130, 175, 499, 539
AjnI CCWGG 1 cut(s) 134
AjuI GAANNNNNNNTTGG 2 cut(s) 372, 404
AluBI AGCT 4 cut(s) 125, 144, 375, 631
AluI AGCT 4 cut(s) 125, 144, 375, 631
Alw26I GTCTC 1 cut(s) 449
AlwI GGATC 4 cut(s) 298, 311, 616, 624
Aor51HI AGCGCT 1 cut(s) 694
AoxI GGCC 2 cut(s) 291, 475
ApeKI GCWGC 5 cut(s) 164, 563, 684, 711, 720
AseI ATTAAT 1 cut(s) 207
AspLEI GCGC 1 cut(s) 695
AsuC2I CCSGG 1 cut(s) 225
BaeGI GKGCMC 1 cut(s) 592
BamHI GGATCC 1 cut(s) 303
BanI GGYRCC 1 cut(s) 731
BbsI GAAGAC 1 cut(s) 182
BbvI GCAGC 5 cut(s) 151, 550, 696, 723, 732
BccI CCATC 2 cut(s) 188, 293
BceAI ACGGC 1 cut(s) 462
BciT130I CCWGG 1 cut(s) 136
BcnI CCSGG 1 cut(s) 225
BcoDI GTCTC 1 cut(s) 449
BfaI CTAG 2 cut(s) 147, 333
BfmI CTRYAG 1 cut(s) 370
BfoI RGCGCY 1 cut(s) 696
BglI GCCNNNNNGGC 1 cut(s) 596
BisI GCNGC 7 cut(s) 165, 564, 685, 712, 721, 730, 757
BlsI GCNGC 7 cut(s) 166, 565, 686, 713, 722, 731, 758
Bme1390I CCNGG 2 cut(s) 136, 225
BmiI GGNNCC 2 cut(s) 305, 733
BmrFI CCNGG 2 cut(s) 136, 225
BmsI GCATC 1 cut(s) 522
BpiI GAAGAC 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 294
Bsc4I CCNNNNNNNGG 1 cut(s) 300
Bse118I RCCGGY 1 cut(s) 24
Bse1I ACTGG 1 cut(s) 82
BseBI CCWGG 1 cut(s) 136
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 1 cut(s) 300
BseNI ACTGG 1 cut(s) 82
BseRI GAGGAG 1 cut(s) 447
BseSI GKGCMC 1 cut(s) 592
BseXI GCAGC 5 cut(s) 151, 550, 696, 723, 732
BsgI GTGCAG 1 cut(s) 549
Bsh1285I CGRYCG 1 cut(s) 162
BshFI GGCC 2 cut(s) 293, 477
BshNI GGYRCC 1 cut(s) 731
BsiEI CGRYCG 1 cut(s) 162
BsiSI CCGG 2 cut(s) 25, 224
BslI CCNNNNNNNGG 1 cut(s) 300
BsmAI GTCTC 1 cut(s) 449
BsmI GAATGC 1 cut(s) 108
BsnI GGCC 2 cut(s) 293, 477
Bsp1286I GDGCHC 1 cut(s) 592
Bsp143I GATC 4 cut(s) 303, 616, 621, 640
BspACI CCGC 8 cut(s) 162, 614, 669, 702, 723, 729, 738, 756
BspANI GGCC 2 cut(s) 293, 477
BspLI GGNNCC 2 cut(s) 305, 733
BspPI GGATC 4 cut(s) 298, 311, 616, 624
BspQI GCTCTTC 1 cut(s) 348
BspT107I GGYRCC 1 cut(s) 731
BsrFI RCCGGY 1 cut(s) 24
BsrI ACTGG 1 cut(s) 82
BssAI RCCGGY 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 4 cut(s) 303, 616, 621, 640
Bst2UI CCWGG 1 cut(s) 136
Bst6I CTCTTC 2 cut(s) 348, 645
BstC8I GCNNGC 1 cut(s) 52
BstDEI CTNAG 3 cut(s) 64, 572, 632
BstF5I GGATG 1 cut(s) 304
BstH2I RGCGCY 1 cut(s) 696
BstHHI GCGC 1 cut(s) 695
BstKTI GATC 4 cut(s) 306, 619, 624, 643
BstMAI GTCTC 1 cut(s) 449
BstMBI GATC 4 cut(s) 303, 616, 621, 640
BstMCI CGRYCG 1 cut(s) 162
BstNI CCWGG 1 cut(s) 136
BstNSI RCATGY 1 cut(s) 563
BstSCI CCNGG 2 cut(s) 134, 223
BstSFI CTRYAG 1 cut(s) 370
BstSLI GKGCMC 1 cut(s) 592
BstV1I GCAGC 5 cut(s) 151, 550, 696, 723, 732
BstV2I GAAGAC 1 cut(s) 182
BstX2I RGATCY 2 cut(s) 303, 621
BstYI RGATCY 2 cut(s) 303, 621
BsuRI GGCC 2 cut(s) 293, 477
BtsCI GGATG 1 cut(s) 304
BtsI GCAGTG 1 cut(s) 682
BtsIMutI CAGTG 2 cut(s) 75, 682
Cac8I GCNNGC 1 cut(s) 52
CfoI GCGC 1 cut(s) 695
Cfr10I RCCGGY 1 cut(s) 24
CseI GACGC 1 cut(s) 81
CviAII CATG 4 cut(s) 308, 514, 529, 560
CviJI RGCY 9 cut(s) 125, 144, 293, 375, 477, 493, 599, 631, 759
CviKI_1 RGCY 9 cut(s) 125, 144, 293, 375, 477, 493, 599, 631, 759
DdeI CTNAG 3 cut(s) 64, 572, 632
DpnI GATC 4 cut(s) 305, 618, 623, 642
DpnII GATC 4 cut(s) 303, 616, 621, 640
EaeI YGGCCR 1 cut(s) 291
Eam1104I CTCTTC 2 cut(s) 348, 645
EarI CTCTTC 2 cut(s) 348, 645
EciI GGCGGA 1 cut(s) 684
Eco47III AGCGCT 1 cut(s) 694
EcoRII CCWGG 1 cut(s) 134
EcoT22I ATGCAT 1 cut(s) 284
FaeI CATG 4 cut(s) 311, 517, 532, 563
FaiI YATR 8 cut(s) 59, 215, 309, 411, 413, 515, 530, 561
FatI CATG 4 cut(s) 307, 513, 528, 559
Fnu4HI GCNGC 7 cut(s) 165, 564, 685, 712, 721, 730, 757
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 7 cut(s) 165, 564, 685, 712, 721, 730, 757
FspBI CTAG 2 cut(s) 147, 333
GlaI GCGC 1 cut(s) 694
GluI GCNGC 7 cut(s) 165, 564, 685, 712, 721, 730, 757
HaeII RGCGCY 1 cut(s) 696
HaeIII GGCC 2 cut(s) 293, 477
HapII CCGG 2 cut(s) 25, 224
HgaI GACGC 1 cut(s) 81
HhaI GCGC 1 cut(s) 695
Hin1II CATG 4 cut(s) 311, 517, 532, 563
Hin6I GCGC 1 cut(s) 693
HinP1I GCGC 1 cut(s) 693
HindIII AAGCTT 2 cut(s) 123, 629
HinfI GANTC 1 cut(s) 506
HpaII CCGG 2 cut(s) 25, 224
Hpy166II GTNNAC 1 cut(s) 8
Hpy188I TCNGA 3 cut(s) 253, 621, 626
Hpy188III TCNNGA 1 cut(s) 157
Hpy8I GTNNAC 1 cut(s) 8
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 3 cut(s) 282, 365, 566
HpyF3I CTNAG 3 cut(s) 64, 572, 632
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 4 cut(s) 311, 517, 532, 563
HspAI GCGC 1 cut(s) 693
Kzo9I GATC 4 cut(s) 303, 616, 621, 640
LguI GCTCTTC 1 cut(s) 348
LpnPI CCDG 7 cut(s) 38, 63, 84, 121, 148, 237, 748
Lsp1109I GCAGC 5 cut(s) 151, 550, 696, 723, 732
LweI GCATC 1 cut(s) 522
MaeI CTAG 2 cut(s) 147, 333
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 2 cut(s) 154, 635
MalI GATC 4 cut(s) 305, 618, 623, 642
MboI GATC 4 cut(s) 303, 616, 621, 640
MboII GAAGA 9 cut(s) 187, 365, 458, 461, 476, 511, 662, 667, 670
MflI RGATCY 2 cut(s) 303, 621
MhlI GDGCHC 1 cut(s) 592
MluCI AATT 6 cut(s) 130, 170, 204, 238, 270, 287
MlyI GAGTC 1 cut(s) 515
MmeI TCCRAC 2 cut(s) 49, 423
MnlI CCTC 6 cut(s) 289, 425, 589, 659, 674, 701
Mph1103I ATGCAT 1 cut(s) 284
MseI TTAA 3 cut(s) 207, 285, 772
MspA1I CMGCKG 3 cut(s) 164, 723, 738
MspI CCGG 2 cut(s) 25, 224
MspR9I CCNGG 2 cut(s) 136, 225
Mva1269I GAATGC 1 cut(s) 108
MvaI CCWGG 1 cut(s) 136
NciI CCSGG 1 cut(s) 225
NdeII GATC 4 cut(s) 303, 616, 621, 640
NlaIII CATG 4 cut(s) 311, 517, 532, 563
NlaIV GGNNCC 2 cut(s) 305, 733
NmeAIII GCCGAG 1 cut(s) 319
NmuCI GTSAC 2 cut(s) 154, 635
NsiI ATGCAT 1 cut(s) 284
NspI RCATGY 1 cut(s) 563
PciSI GCTCTTC 1 cut(s) 348
PctI GAATGC 1 cut(s) 108
PkrI GCNGC 7 cut(s) 166, 565, 686, 713, 722, 731, 758
PleI GAGTC 1 cut(s) 514
PpsI GAGTC 1 cut(s) 514
PshBI ATTAAT 1 cut(s) 207
Psp6I CCWGG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 134
PspN4I GGNNCC 2 cut(s) 305, 733
PsrI GAACNNNNNNTAC 2 cut(s) 328, 360
PsuI RGATCY 2 cut(s) 303, 621
SapI GCTCTTC 1 cut(s) 348
SaqAI TTAA 3 cut(s) 207, 285, 772
SatI GCNGC 7 cut(s) 165, 564, 685, 712, 721, 730, 757
Sau3AI GATC 4 cut(s) 303, 616, 621, 640
SchI GAGTC 1 cut(s) 515
ScrFI CCNGG 2 cut(s) 136, 225
SduI GDGCHC 1 cut(s) 592
SetI ASST 6 cut(s) 13, 127, 146, 377, 611, 633
SfaNI GCATC 1 cut(s) 522
SfcI CTRYAG 1 cut(s) 370
Sse9I AATT 6 cut(s) 130, 170, 204, 238, 270, 287
SsiI CCGC 8 cut(s) 162, 614, 669, 702, 723, 729, 738, 756
SspMI CTAG 2 cut(s) 147, 333
StyD4I CCNGG 2 cut(s) 134, 223
TaiI ACGT 1 cut(s) 13
TaqI TCGA 1 cut(s) 14
TasI AATT 6 cut(s) 130, 170, 204, 238, 270, 287
TauI GCSGC 2 cut(s) 732, 759
Tru1I TTAA 3 cut(s) 207, 285, 772
Tru9I TTAA 3 cut(s) 207, 285, 772
TscAI CASTG 2 cut(s) 82, 682
TseFI GTSAC 2 cut(s) 154, 635
TseI GCWGC 5 cut(s) 164, 563, 684, 711, 720
Tsp45I GTSAC 2 cut(s) 154, 635
TspDTI ATGAA 1 cut(s) 570
TspRI CASTG 2 cut(s) 82, 682
VspI ATTAAT 1 cut(s) 207
XceI RCATGY 1 cut(s) 563
XspI CTAG 2 cut(s) 147, 333
Zsp2I ATGCAT 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.