RchiOBHm_Chr7g0229241
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000615
Physical Location & Seq
Forward (+)
52703010 .. 52705554
2545 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20535

Sequence Viewer

Length: 966 bp
ATGCGGGAACTTCCCTTTTCTAATGCTGCTCGCACTGTGGTCTTAGTTGGACGCACTGGTAATGGAAAAAGTGCAACAGGCAACAGCATTCTTGGCAAAAACGCCTTCAAGGCCAAGCGTAGCTCTAGTGGTGTCACGACCACTACTGAATTGAAGACTGCTATCTTGAGAGATGGACAACAAATTAATGTTATAGACACTCCTGGTCTTTTTGATAATTCTGCCAAATCAGACTTTATTAGCAAAGAAATTGCCAAATGCATTACATTGGCCGAGGATGGAATCCATGGTGTTCTTGTGGTTCTCTCAACTAGAACTCGCTTTACAAAAGAAGAAGAGTCTGCAATCCGTAGCTTGGAAACTCTATTTGGAAGTAAAATCTTTGACTATATGATTGTTGTCTTTACGGGAGGAGATGAGCTTGAAGAAGATGAGACTTTGGAAGATTATTTGGGCCGTGATTGCCCGGAGCATTTGAAGGAAATCCTTGGTCTCTGTGGAAATCGCTGTGTGCTTTTTGATAACAAGTCTAAGGATGAAAGCAAGAGGGTTGAACAAGTGCAGCGGCTTCTCTCGCTTGTAAACTTGGTTATAGCTCAGAATGGTGGGAGGCCATACACGGATGAGATATTTGCTGAAGTGAAGAAATTTCGTGATCAACAAGAAGAGGTTGCTTCGAAGGGGTATTCAAAACAAGAAATATCTCGTTTGAATGAGCAGATACAGCTTGCACATGATCAGCAGCTTAAACAAATTACTGAGATGATTGATTTAAAGATGAAAGAGAAAACCATGATGCTTGAACAAAAGTTAGCAGATGAACGTGCTGCAAGACTAAGAGCAGAAGAGACTACCCAAGAGGCTCAACAAAGGTCTGAGGATGTAATCCGAAAGATTAGAAACGATCTTGCAAACACGCCTGAGCCTAAGCAGCCAAAATGCACGGAGAGGTGTGCTATTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

321

Amino Acids

36.12

Weight (kDa)

5.71

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 11 - 220 8.1e-81 AIG1 family
MMR_HSR1 PF01926 12 - 119 7.4e-11 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 4, 565
AcoI YGGCCR 1 cut(s) 270
AcsI RAATTY 1 cut(s) 647
AcuI CTGAAG 1 cut(s) 657
AfiI CCNNNNNNNGG 1 cut(s) 355
AgsI TTSAA 8 cut(s) 109, 154, 425, 478, 554, 690, 712, 803
AjnI CCWGG 1 cut(s) 202
AjuI GAANNNNNNNTTGG 2 cut(s) 351, 383
AluBI AGCT 6 cut(s) 123, 354, 421, 596, 727, 745
AluI AGCT 6 cut(s) 123, 354, 421, 596, 727, 745
Alw26I GTCTC 3 cut(s) 428, 497, 842
AoxI GGCC 4 cut(s) 111, 270, 454, 611
ApeKI GCWGC 5 cut(s) 26, 562, 742, 827, 931
ApoI RAATTY 1 cut(s) 647
AseI ATTAAT 1 cut(s) 186
AspS9I GGNCC 1 cut(s) 454
AsuC2I CCSGG 1 cut(s) 467
AsuII TTCGAA 1 cut(s) 677
BbsI GAAGAC 1 cut(s) 161
BbvI GCAGC 5 cut(s) 13, 574, 754, 814, 943
BccI CCATC 2 cut(s) 167, 272
BceAI ACGGC 1 cut(s) 441
BciT130I CCWGG 1 cut(s) 204
BclI TGATCA 2 cut(s) 655, 736
BcnI CCSGG 1 cut(s) 467
BcoDI GTCTC 3 cut(s) 428, 497, 842
BfaI CTAG 2 cut(s) 126, 312
BglI GCCNNNNNGGC 1 cut(s) 110
BisI GCNGC 6 cut(s) 27, 563, 566, 743, 828, 932
BlsI GCNGC 6 cut(s) 28, 564, 567, 744, 829, 933
Bme1390I CCNGG 2 cut(s) 204, 467
BmgT120I GGNCC 1 cut(s) 454
BmrFI CCNGG 2 cut(s) 204, 467
BmsI GCATC 1 cut(s) 786
BpiI GAAGAC 1 cut(s) 161
Bpu10I CCTNAGC 2 cut(s) 921, 927
Bpu14I TTCGAA 1 cut(s) 677
BpuEI CTTGAG 1 cut(s) 187
BpuMI CCSGG 1 cut(s) 467
BsaI GGTCTC 1 cut(s) 497
BsaJI CCNNGG 3 cut(s) 273, 286, 487
Bsc4I CCNNNNNNNGG 1 cut(s) 355
Bse1I ACTGG 1 cut(s) 61
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 3 cut(s) 273, 286, 487
BseGI GGATG 4 cut(s) 283, 541, 628, 886
BseLI CCNNNNNNNGG 1 cut(s) 355
BseMII CTCAG 4 cut(s) 611, 750, 867, 912
BseNI ACTGG 1 cut(s) 61
BseRI GAGGAG 1 cut(s) 426
BseXI GCAGC 5 cut(s) 13, 574, 754, 814, 943
BsgI GTGCAG 1 cut(s) 581
BshFI GGCC 4 cut(s) 113, 272, 456, 613
BsiSI CCGG 1 cut(s) 467
BslI CCNNNNNNNGG 1 cut(s) 355
BsmAI GTCTC 3 cut(s) 428, 497, 842
BsmI GAATGC 1 cut(s) 87
BsnI GGCC 4 cut(s) 113, 272, 456, 613
Bso31I GGTCTC 1 cut(s) 497
Bsp119I TTCGAA 1 cut(s) 677
Bsp143I GATC 3 cut(s) 655, 736, 904
Bsp19I CCATGG 1 cut(s) 286
BspACI CCGC 2 cut(s) 4, 565
BspANI GGCC 4 cut(s) 113, 272, 456, 613
BspCNI CTCAG 4 cut(s) 610, 751, 868, 913
BspT104I TTCGAA 1 cut(s) 677
BspTNI GGTCTC 1 cut(s) 497
BsrI ACTGG 1 cut(s) 61
BssECI CCNNGG 3 cut(s) 273, 286, 487
BssMI GATC 3 cut(s) 655, 736, 904
BssT1I CCWWGG 2 cut(s) 286, 487
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 37
Bst6I CTCTTC 3 cut(s) 330, 660, 840
BstBI TTCGAA 1 cut(s) 677
BstC8I GCNNGC 2 cut(s) 31, 729
BstDEI CTNAG 8 cut(s) 43, 531, 597, 759, 836, 876, 921, 927
BstDSI CCRYGG 1 cut(s) 286
BstF5I GGATG 4 cut(s) 283, 541, 628, 886
BstKTI GATC 3 cut(s) 658, 739, 907
BstMAI GTCTC 3 cut(s) 428, 497, 842
BstMBI GATC 3 cut(s) 655, 736, 904
BstMWI GCNNNNNNNGC 6 cut(s) 93, 110, 462, 574, 724, 931
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 2 cut(s) 202, 465
BstV1I GCAGC 5 cut(s) 13, 574, 754, 814, 943
BstV2I GAAGAC 1 cut(s) 161
BsuRI GGCC 4 cut(s) 113, 272, 456, 613
BtgI CCRYGG 1 cut(s) 286
BtsCI GGATG 4 cut(s) 283, 541, 628, 886
BtsIMutI CAGTG 2 cut(s) 33, 54
Cac8I GCNNGC 2 cut(s) 31, 729
Cfr13I GGNCC 1 cut(s) 454
CseI GACGC 1 cut(s) 60
CviAII CATG 3 cut(s) 287, 734, 793
DdeI CTNAG 8 cut(s) 43, 531, 597, 759, 836, 876, 921, 927
DpnI GATC 3 cut(s) 657, 738, 906
DpnII GATC 3 cut(s) 655, 736, 904
DraI TTTAAA 1 cut(s) 774
EaeI YGGCCR 1 cut(s) 270
Eam1104I CTCTTC 3 cut(s) 330, 660, 840
EarI CTCTTC 3 cut(s) 330, 660, 840
Eco130I CCWWGG 2 cut(s) 286, 487
Eco31I GGTCTC 1 cut(s) 497
Eco57I CTGAAG 1 cut(s) 657
EcoRII CCWGG 1 cut(s) 202
EcoT14I CCWWGG 2 cut(s) 286, 487
EcoT22I ATGCAT 1 cut(s) 263
ErhI CCWWGG 2 cut(s) 286, 487
FaeI CATG 3 cut(s) 290, 737, 796
FaiI YATR 9 cut(s) 194, 288, 390, 392, 593, 616, 735, 794, 962
FatI CATG 3 cut(s) 286, 733, 792
FbaI TGATCA 2 cut(s) 655, 736
Fnu4HI GCNGC 6 cut(s) 27, 563, 566, 743, 828, 932
FokI GGATG 4 cut(s) 290, 548, 635, 893
Fsp4HI GCNGC 6 cut(s) 27, 563, 566, 743, 828, 932
FspBI CTAG 2 cut(s) 126, 312
GluI GCNGC 6 cut(s) 27, 563, 566, 743, 828, 932
HaeIII GGCC 4 cut(s) 113, 272, 456, 613
HapII CCGG 1 cut(s) 467
HgaI GACGC 1 cut(s) 60
Hin1II CATG 3 cut(s) 290, 737, 796
HinfI GANTC 2 cut(s) 282, 338
HpaII CCGG 1 cut(s) 467
Hpy166II GTNNAC 1 cut(s) 583
Hpy188I TCNGA 4 cut(s) 232, 600, 877, 890
Hpy188III TCNNGA 3 cut(s) 136, 166, 653
Hpy8I GTNNAC 1 cut(s) 583
HpyAV CCTTC 3 cut(s) 115, 472, 673
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 823
HpyCH4V TGCA 8 cut(s) 74, 261, 344, 562, 731, 830, 911, 942
HpyF10VI GCNNNNNNNGC 6 cut(s) 93, 110, 462, 574, 724, 931
HpyF3I CTNAG 8 cut(s) 43, 531, 597, 759, 836, 876, 921, 927
HpySE526I ACGT 1 cut(s) 823
Hsp92II CATG 3 cut(s) 290, 737, 796
Ksp22I TGATCA 2 cut(s) 655, 736
Kzo9I GATC 3 cut(s) 655, 736, 904
LmnI GCTCC 1 cut(s) 469
LpnPI CCDG 6 cut(s) 42, 63, 189, 216, 480, 933
Lsp1109I GCAGC 5 cut(s) 13, 574, 754, 814, 943
LweI GCATC 1 cut(s) 786
MaeI CTAG 2 cut(s) 126, 312
MaeII ACGT 1 cut(s) 823
MaeIII GTNAC 1 cut(s) 133
MalI GATC 3 cut(s) 657, 738, 906
MboI GATC 3 cut(s) 655, 736, 904
MboII GAAGA 9 cut(s) 166, 344, 347, 437, 440, 455, 655, 677, 857
MluCI AATT 6 cut(s) 149, 183, 217, 249, 647, 753
MlyI GAGTC 1 cut(s) 347
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 8 cut(s) 268, 404, 540, 603, 661, 853, 871, 942
Mph1103I ATGCAT 1 cut(s) 263
MseI TTAA 3 cut(s) 186, 747, 773
MspA1I CMGCKG 1 cut(s) 565
MspI CCGG 1 cut(s) 467
MspR9I CCNGG 2 cut(s) 204, 467
Mva1269I GAATGC 1 cut(s) 87
MvaI CCWGG 1 cut(s) 204
MwoI GCNNNNNNNGC 6 cut(s) 93, 110, 462, 574, 724, 931
NciI CCSGG 1 cut(s) 467
NcoI CCATGG 1 cut(s) 286
NdeII GATC 3 cut(s) 655, 736, 904
NlaIII CATG 3 cut(s) 290, 737, 796
NmeAIII GCCGAG 1 cut(s) 298
NmuCI GTSAC 1 cut(s) 133
NsiI ATGCAT 1 cut(s) 263
NspV TTCGAA 1 cut(s) 677
PctI GAATGC 1 cut(s) 87
PfeI GAWTC 1 cut(s) 282
PkrI GCNGC 6 cut(s) 28, 564, 567, 744, 829, 933
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
PshBI ATTAAT 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspPI GGNCC 1 cut(s) 454
PsrI GAACNNNNNNTAC 2 cut(s) 307, 339
SaqAI TTAA 3 cut(s) 186, 747, 773
SatI GCNGC 6 cut(s) 27, 563, 566, 743, 828, 932
Sau3AI GATC 3 cut(s) 655, 736, 904
Sau96I GGNCC 1 cut(s) 454
SchI GAGTC 1 cut(s) 347
ScrFI CCNGG 2 cut(s) 204, 467
SfaNI GCATC 1 cut(s) 786
SfuI TTCGAA 1 cut(s) 677
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 6 cut(s) 149, 183, 217, 249, 647, 753
SsiI CCGC 2 cut(s) 4, 565
SspMI CTAG 2 cut(s) 126, 312
StyD4I CCNGG 2 cut(s) 202, 465
StyI CCWWGG 2 cut(s) 286, 487
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 1 cut(s) 826
TaqI TCGA 1 cut(s) 677
TasI AATT 6 cut(s) 149, 183, 217, 249, 647, 753
TauI GCSGC 1 cut(s) 568
TfiI GAWTC 1 cut(s) 282
Tru1I TTAA 3 cut(s) 186, 747, 773
Tru9I TTAA 3 cut(s) 186, 747, 773
TscAI CASTG 2 cut(s) 40, 61
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 5 cut(s) 26, 562, 742, 827, 931
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 3 cut(s) 552, 794, 834
TspGWI ACGGA 3 cut(s) 338, 635, 959
TspRI CASTG 2 cut(s) 40, 61
VspI ATTAAT 1 cut(s) 186
XapI RAATTY 1 cut(s) 647
XspI CTAG 2 cut(s) 126, 312
Zsp2I ATGCAT 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.