Rmu_co8281135.1_g000001
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8281135.1
OG0000615
Physical Location & Seq
Forward (+)
1 .. 794
794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8281135.1_g000001.1.cds

Sequence Viewer

Length: 504 bp
gaacttccctttcctaatgctgctcgcactatggtcttatttggacgcactggtaatggaaaaagtgcaacaggcaacagcattcttggcaaaagagccttcatttccaagcgtagctctagtggtgtcacgaccagtactgaattgaagactgctatcttgagagatggacaacaaattaatgttatagacactcctggtctttttgataattctgccaaatcagactttattggcaaagaaattgcccagtgcattaaattggccgaggatgggatccatgctgttcttgtggttctctcaactagaactcgctttacaaaagaagagcaatctgcaatctgtagcttggaaaatctatttggacgtaaaatctttgactatacgattgttgtctttacgggaggagatgagttggaagaagatgagactttggaagattatttgggccgtgattgcccggggcctttgaaggtaaatttgtttcttcaatttgggacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

167

Amino Acids

18.21

Weight (kDa)

5.27

Isoelectric Point (pI)

33.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 271, 284
AcoI YGGCCR 1 cut(s) 264
AcsI RAATTY 1 cut(s) 478
AfaI GTAC 1 cut(s) 139
AfiI CCNNNNNNNGG 1 cut(s) 273
AgsI TTSAA 3 cut(s) 148, 472, 491
AjnI CCWGG 1 cut(s) 196
AjuI GAANNNNNNNTTGG 2 cut(s) 345, 377
AluBI AGCT 2 cut(s) 117, 348
AluI AGCT 2 cut(s) 117, 348
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 2 cut(s) 271, 284
Ama87I CYCGRG 1 cut(s) 460
AoxI GGCC 3 cut(s) 264, 448, 464
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 478
AseI ATTAAT 1 cut(s) 180
AspS9I GGNCC 2 cut(s) 448, 464
AsuC2I CCSGG 2 cut(s) 461, 462
AvaI CYCGRG 1 cut(s) 460
BamHI GGATCC 1 cut(s) 276
BbsI GAAGAC 1 cut(s) 155
BbvI GCAGC 1 cut(s) 7
BccI CCATC 2 cut(s) 161, 266
BceAI ACGGC 1 cut(s) 435
BciT130I CCWGG 1 cut(s) 198
BcnI CCSGG 2 cut(s) 461, 462
BcoDI GTCTC 1 cut(s) 422
BfaI CTAG 2 cut(s) 120, 306
BfmI CTRYAG 1 cut(s) 343
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
BmcAI AGTACT 1 cut(s) 139
Bme1390I CCNGG 3 cut(s) 198, 461, 462
BmeT110I CYCGRG 1 cut(s) 460
BmgT120I GGNCC 2 cut(s) 448, 464
BmiI GGNNCC 2 cut(s) 278, 465
BmrFI CCNGG 3 cut(s) 198, 461, 462
BmrI ACTGGG 1 cut(s) 244
BmuI ACTGGG 1 cut(s) 244
BpiI GAAGAC 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 181
BpuMI CCSGG 2 cut(s) 461, 462
BsaJI CCNNGG 3 cut(s) 267, 460, 461
Bsc4I CCNNNNNNNGG 1 cut(s) 273
Bse1I ACTGG 3 cut(s) 55, 135, 250
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 3 cut(s) 267, 460, 461
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 1 cut(s) 273
BseNI ACTGG 3 cut(s) 55, 135, 250
BseRI GAGGAG 1 cut(s) 420
BseXI GCAGC 1 cut(s) 7
BshFI GGCC 3 cut(s) 266, 450, 466
BsiHKCI CYCGRG 1 cut(s) 460
BsiSI CCGG 1 cut(s) 461
BslI CCNNNNNNNGG 1 cut(s) 273
BsmAI GTCTC 1 cut(s) 422
BsmI GAATGC 1 cut(s) 81
BsnI GGCC 3 cut(s) 266, 450, 466
BsoBI CYCGRG 1 cut(s) 460
Bsp143I GATC 1 cut(s) 276
BspANI GGCC 3 cut(s) 266, 450, 466
BspLI GGNNCC 2 cut(s) 278, 465
BspPI GGATC 2 cut(s) 271, 284
BspQI GCTCTTC 1 cut(s) 321
BsrI ACTGG 3 cut(s) 55, 135, 250
BssECI CCNNGG 3 cut(s) 267, 460, 461
BssMI GATC 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 198
Bst6I CTCTTC 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 25
BstF5I GGATG 1 cut(s) 277
BstKTI GATC 1 cut(s) 279
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 1 cut(s) 276
BstMWI GCNNNNNNNGC 2 cut(s) 87, 456
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 3 cut(s) 196, 459, 460
BstSFI CTRYAG 1 cut(s) 343
BstV1I GCAGC 1 cut(s) 7
BstV2I GAAGAC 1 cut(s) 155
BstX2I RGATCY 1 cut(s) 276
BstYI RGATCY 1 cut(s) 276
BsuRI GGCC 3 cut(s) 266, 450, 466
BtsCI GGATG 1 cut(s) 277
BtsIMutI CAGTG 2 cut(s) 48, 257
Cac8I GCNNGC 1 cut(s) 25
Cfr13I GGNCC 2 cut(s) 448, 464
Cfr9I CCCGGG 1 cut(s) 460
CseI GACGC 1 cut(s) 54
Csp6I GTAC 1 cut(s) 138
CviAII CATG 2 cut(s) 281, 501
CviJI RGCY 6 cut(s) 98, 117, 266, 348, 450, 466
CviKI_1 RGCY 6 cut(s) 98, 117, 266, 348, 450, 466
CviQI GTAC 1 cut(s) 138
DpnI GATC 1 cut(s) 278
DpnII GATC 1 cut(s) 276
EaeI YGGCCR 1 cut(s) 264
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
Eco88I CYCGRG 1 cut(s) 460
EcoO109I RGGNCCY 1 cut(s) 464
EcoRII CCWGG 1 cut(s) 196
FaeI CATG 2 cut(s) 284, 504
FaiI YATR 5 cut(s) 32, 188, 282, 384, 502
FatI CATG 2 cut(s) 280, 500
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 2 cut(s) 120, 306
GluI GCNGC 1 cut(s) 21
HaeIII GGCC 3 cut(s) 266, 450, 466
HapII CCGG 1 cut(s) 461
HgaI GACGC 1 cut(s) 54
Hin1II CATG 2 cut(s) 284, 504
HpaII CCGG 1 cut(s) 461
Hpy188I TCNGA 1 cut(s) 226
Hpy188III TCNNGA 2 cut(s) 130, 160
HpyAV CCTTC 2 cut(s) 109, 466
HpyCH4IV ACGT 1 cut(s) 367
HpyCH4V TGCA 3 cut(s) 68, 255, 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 456
HpySE526I ACGT 1 cut(s) 367
Hsp92II CATG 2 cut(s) 284, 504
Kzo9I GATC 1 cut(s) 276
LguI GCTCTTC 1 cut(s) 321
LpnPI CCDG 7 cut(s) 36, 57, 148, 183, 210, 263, 474
Lsp1109I GCAGC 1 cut(s) 7
MaeI CTAG 2 cut(s) 120, 306
MaeII ACGT 1 cut(s) 367
MaeIII GTNAC 1 cut(s) 127
MalI GATC 1 cut(s) 278
MboI GATC 1 cut(s) 276
MboII GAAGA 6 cut(s) 160, 338, 431, 434, 449, 479
MflI RGATCY 1 cut(s) 276
MluCI AATT 7 cut(s) 143, 177, 211, 243, 260, 478, 491
MmeI TCCRAC 1 cut(s) 396
MnlI CCTC 2 cut(s) 262, 398
MseI TTAA 2 cut(s) 180, 258
MspI CCGG 1 cut(s) 461
MspR9I CCNGG 3 cut(s) 198, 461, 462
Mva1269I GAATGC 1 cut(s) 81
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 2 cut(s) 87, 456
NciI CCSGG 2 cut(s) 461, 462
NdeII GATC 1 cut(s) 276
NlaIII CATG 2 cut(s) 284, 504
NlaIV GGNNCC 2 cut(s) 278, 465
NmeAIII GCCGAG 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 127
PciSI GCTCTTC 1 cut(s) 321
PctI GAATGC 1 cut(s) 81
PkrI GCNGC 1 cut(s) 22
PshBI ATTAAT 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 2 cut(s) 278, 465
PspPI GGNCC 2 cut(s) 448, 464
PsrI GAACNNNNNNTAC 2 cut(s) 301, 333
PsuI RGATCY 1 cut(s) 276
RsaI GTAC 1 cut(s) 139
RsaNI GTAC 1 cut(s) 138
SapI GCTCTTC 1 cut(s) 321
SaqAI TTAA 2 cut(s) 180, 258
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 1 cut(s) 276
Sau96I GGNCC 2 cut(s) 448, 464
ScaI AGTACT 1 cut(s) 139
ScrFI CCNGG 3 cut(s) 198, 461, 462
SetI ASST 4 cut(s) 119, 350, 370, 477
SfcI CTRYAG 1 cut(s) 343
SmaI CCCGGG 1 cut(s) 462
SmlI CTYRAG 1 cut(s) 160
SmoI CTYRAG 1 cut(s) 160
Sse9I AATT 7 cut(s) 143, 177, 211, 243, 260, 478, 491
SspMI CTAG 2 cut(s) 120, 306
StyD4I CCNGG 3 cut(s) 196, 459, 460
TaiI ACGT 1 cut(s) 370
TasI AATT 7 cut(s) 143, 177, 211, 243, 260, 478, 491
TatI WGTACW 1 cut(s) 137
Tru1I TTAA 2 cut(s) 180, 258
Tru9I TTAA 2 cut(s) 180, 258
TscAI CASTG 2 cut(s) 55, 257
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 91
TspMI CCCGGG 1 cut(s) 460
TspRI CASTG 2 cut(s) 55, 257
VspI ATTAAT 1 cut(s) 180
XapI RAATTY 1 cut(s) 478
XmaI CCCGGG 1 cut(s) 460
XspI CTAG 2 cut(s) 120, 306
ZrmI AGTACT 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.