RLG00000000796
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000615
Physical Location & Seq
Reverse (-)
5627222 .. 5629878
2657 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000796

Sequence Viewer

Length: 1029 bp
ATGGATGGAAGTTCGATTGATGTTGACCAGGAACTTCCCTTTTCTAATGCTGCTCGCACTGTGGTCTTAGTTGGACGCACTGGTAATGGAAAAAGTGCAACAGGCAACAGCATTCTTGGCAAAAATGCCTTCAAGGCCAAGCGTAGCTCTAGTAGGGTCACGACCACTACTGAATTGAAGACTGCTATCTTGAGAGATGGACAACAAATTAATGTTATAGACACTCCTGGTCTTTTTGATAATTCTGCCAAATCAGACTTCATTGGCAAAGAAATTGTCCAAAGCATTAAATTGGCCAAGGATGGAATCCATGCTGTTCTTGTGGTTCTCTCAACTAAAACTCGCTTATCTGAAGAAGAGGAGTCTGCAATCCGTAGCTTGGAAACTCTCTTTGGAAGTAAAATCTTTGACTATATGATTGTTGTCTTTACGGGAGGAGATGAGTTGGAAGAAAATGATCAAACTTTGGAAGATTATTTGGGCAGTGATTGCCCGGAGCCTTTGAAGAAAATCCTTGGTTTGTGTGGAAATCGTTGTGTGCTTTTTGATAACAAGACTAAGGATGAAAGCAAGAGGGTCGAACAAGTGCAGCAGCTTCTCTCGCTTGTAAACTCGGTTATAGCACAAAATGGTGGGCGCCCATACACGGATGAGATATTTGCTGAAGTTAAGAAAGGGGCTATGGAACTTAGTGATCAACAAGAAGGGGTTGCTTCTTTGAAGGGGTATTCAAAACAAGAAATATCTCATTGGAATGAGCAGATACAGCTTGCACATGATCAGCAGCTTAAACAAATTACTGAGATGCTTGAGTTAAAGATGAGAGTGAATGCTATGACACTTGAACAAAAGTTAGCAGATGAACATGCTGCACGACTAAGAGCAGAACTGCAGATCGCCCAAGAGGCTCAACAAAGGTCTGAGAATGAGATCCGAGGGCTTAGATACGATCCACAAGCAGAGAAGCGGATACGCAATGGAAACGGCAGAGGCCGCATAAGCCTCAGAGACATATGTCCTATTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

343

Amino Acids

38.0

Weight (kDa)

5.52

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 19 - 233 8.2e-80 AIG1 family
MMR_HSR1 PF01926 20 - 127 2.1e-11 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 636
AciI CCGC 2 cut(s) 967, 994
AclWI GGATC 2 cut(s) 925, 944
AcoI YGGCCR 1 cut(s) 294
AcuI CTGAAG 2 cut(s) 372, 684
AcyI GRCGYC 1 cut(s) 637
AfiI CCNNNNNNNGG 2 cut(s) 379, 646
AgsI TTSAA 6 cut(s) 133, 178, 505, 721, 732, 845
AjnI CCWGG 2 cut(s) 27, 226
AjuI GAANNNNNNNTTGG 4 cut(s) 242, 274, 375, 407
AluBI AGCT 5 cut(s) 147, 378, 595, 769, 787
AluI AGCT 5 cut(s) 147, 378, 595, 769, 787
Alw26I GTCTC 1 cut(s) 1002
AlwI GGATC 2 cut(s) 925, 944
AoxI GGCC 3 cut(s) 135, 294, 991
ApeKI GCWGC 5 cut(s) 50, 589, 592, 784, 869
ArsI GACNNNNNNTTYG 2 cut(s) 261, 293
AseI ATTAAT 1 cut(s) 210
AspLEI GCGC 1 cut(s) 639
AsuC2I CCSGG 1 cut(s) 494
BalI TGGCCA 1 cut(s) 296
BanI GGYRCC 1 cut(s) 636
BbsI GAAGAC 1 cut(s) 185
BbvI GCAGC 5 cut(s) 37, 601, 604, 796, 856
BccI CCATC 2 cut(s) 191, 296
BceAI ACGGC 1 cut(s) 1000
BcgI CGANNNNNNTGC 2 cut(s) 559, 593
BciT130I CCWGG 2 cut(s) 29, 228
BciVI GTATCC 1 cut(s) 963
BclI TGATCA 3 cut(s) 457, 694, 778
BcnI CCSGG 1 cut(s) 494
BcoDI GTCTC 1 cut(s) 1002
BfaI CTAG 1 cut(s) 150
BfmI CTRYAG 1 cut(s) 890
BfoI RGCGCY 1 cut(s) 640
BfuI GTATCC 1 cut(s) 963
BglI GCCNNNNNGGC 2 cut(s) 134, 905
BisI GCNGC 6 cut(s) 51, 590, 593, 785, 870, 994
BlsI GCNGC 6 cut(s) 52, 591, 594, 786, 871, 995
Bme1390I CCNGG 3 cut(s) 29, 228, 494
BmiI GGNNCC 2 cut(s) 498, 638
BmrFI CCNGG 3 cut(s) 29, 228, 494
BmsI GCATC 1 cut(s) 795
BoxI GACNNNNGTC 1 cut(s) 1014
BpiI GAAGAC 1 cut(s) 185
BpuEI CTTGAG 2 cut(s) 211, 830
BpuMI CCSGG 1 cut(s) 494
BsaHI GRCGYC 1 cut(s) 637
BsaJI CCNNGG 3 cut(s) 297, 514, 934
Bsc4I CCNNNNNNNGG 2 cut(s) 379, 646
Bse1I ACTGG 1 cut(s) 85
Bse3DI GCAATG 1 cut(s) 982
BseBI CCWGG 2 cut(s) 29, 228
BseDI CCNNGG 3 cut(s) 297, 514, 934
BseGI GGATG 4 cut(s) 10, 307, 568, 655
BseLI CCNNNNNNNGG 2 cut(s) 379, 646
BseMI GCAATG 1 cut(s) 982
BseMII CTCAG 3 cut(s) 792, 912, 1018
BseNI ACTGG 1 cut(s) 85
BseRI GAGGAG 2 cut(s) 374, 450
BseXI GCAGC 5 cut(s) 37, 601, 604, 796, 856
BsgI GTGCAG 2 cut(s) 608, 855
BshFI GGCC 3 cut(s) 137, 296, 993
BshNI GGYRCC 1 cut(s) 636
BsiSI CCGG 1 cut(s) 494
BslI CCNNNNNNNGG 2 cut(s) 379, 646
BsmAI GTCTC 1 cut(s) 1002
BsmI GAATGC 2 cut(s) 111, 835
BsnI GGCC 3 cut(s) 137, 296, 993
Bsp143I GATC 6 cut(s) 457, 694, 778, 894, 930, 949
BspACI CCGC 2 cut(s) 967, 994
BspANI GGCC 3 cut(s) 137, 296, 993
BspCNI CTCAG 3 cut(s) 793, 913, 1017
BspLI GGNNCC 2 cut(s) 498, 638
BspMAI CTGCAG 1 cut(s) 894
BspPI GGATC 2 cut(s) 925, 944
BspT107I GGYRCC 1 cut(s) 636
BsrDI GCAATG 1 cut(s) 982
BsrI ACTGG 1 cut(s) 85
BssECI CCNNGG 3 cut(s) 297, 514, 934
BssMI GATC 6 cut(s) 457, 694, 778, 894, 930, 949
BssNI GRCGYC 1 cut(s) 637
BssT1I CCWWGG 2 cut(s) 297, 514
Bst2UI CCWGG 2 cut(s) 29, 228
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 1 cut(s) 351
BstACI GRCGYC 1 cut(s) 637
BstAPI GCANNNNNTGC 1 cut(s) 489
BstC8I GCNNGC 2 cut(s) 55, 771
BstDEI CTNAG 8 cut(s) 67, 558, 689, 801, 878, 921, 941, 1004
BstF5I GGATG 4 cut(s) 10, 307, 568, 655
BstH2I RGCGCY 1 cut(s) 640
BstHHI GCGC 1 cut(s) 639
BstKTI GATC 6 cut(s) 460, 697, 781, 897, 933, 952
BstMAI GTCTC 1 cut(s) 1002
BstMBI GATC 6 cut(s) 457, 694, 778, 894, 930, 949
BstMWI GCNNNNNNNGC 8 cut(s) 117, 134, 489, 601, 766, 905, 993, 999
BstNI CCWGG 2 cut(s) 29, 228
BstNSI RCATGY 1 cut(s) 869
BstPAI GACNNNNGTC 1 cut(s) 1014
BstSCI CCNGG 3 cut(s) 27, 226, 492
BstSFI CTRYAG 1 cut(s) 890
BstV1I GCAGC 5 cut(s) 37, 601, 604, 796, 856
BstV2I GAAGAC 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 930
BstYI RGATCY 1 cut(s) 930
BsuI GTATCC 1 cut(s) 963
BsuRI GGCC 3 cut(s) 137, 296, 993
BtsCI GGATG 4 cut(s) 10, 307, 568, 655
BtsI GCAGTG 1 cut(s) 490
BtsIMutI CAGTG 3 cut(s) 57, 78, 490
Cac8I GCNNGC 2 cut(s) 55, 771
CfoI GCGC 1 cut(s) 639
CseI GACGC 1 cut(s) 84
CviAII CATG 3 cut(s) 311, 776, 866
DdeI CTNAG 8 cut(s) 67, 558, 689, 801, 878, 921, 941, 1004
DinI GGCGCC 1 cut(s) 638
DpnI GATC 6 cut(s) 459, 696, 780, 896, 932, 951
DpnII GATC 6 cut(s) 457, 694, 778, 894, 930, 949
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Eco130I CCWWGG 2 cut(s) 297, 514
Eco57I CTGAAG 2 cut(s) 372, 684
EcoRII CCWGG 2 cut(s) 27, 226
EcoT14I CCWWGG 2 cut(s) 297, 514
EgeI GGCGCC 1 cut(s) 638
EheI GGCGCC 1 cut(s) 638
ErhI CCWWGG 2 cut(s) 297, 514
FaeI CATG 3 cut(s) 314, 779, 869
FatI CATG 3 cut(s) 310, 775, 865
FauNDI CATATG 1 cut(s) 1013
FbaI TGATCA 3 cut(s) 457, 694, 778
Fnu4HI GCNGC 6 cut(s) 51, 590, 593, 785, 870, 994
FokI GGATG 4 cut(s) 17, 314, 575, 662
Fsp4HI GCNGC 6 cut(s) 51, 590, 593, 785, 870, 994
FspBI CTAG 1 cut(s) 150
GlaI GCGC 1 cut(s) 638
GluI GCNGC 6 cut(s) 51, 590, 593, 785, 870, 994
HaeII RGCGCY 1 cut(s) 640
HaeIII GGCC 3 cut(s) 137, 296, 993
HapII CCGG 1 cut(s) 494
HgaI GACGC 1 cut(s) 84
HhaI GCGC 1 cut(s) 639
Hin1I GRCGYC 1 cut(s) 637
Hin1II CATG 3 cut(s) 314, 779, 869
Hin6I GCGC 1 cut(s) 637
HinP1I GCGC 1 cut(s) 637
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 2 cut(s) 306, 362
HpaII CCGG 1 cut(s) 494
Hpy166II GTNNAC 2 cut(s) 25, 610
Hpy188I TCNGA 5 cut(s) 256, 352, 922, 935, 1007
Hpy188III TCNNGA 2 cut(s) 160, 190
Hpy8I GTNNAC 2 cut(s) 25, 610
HpyAV CCTTC 3 cut(s) 139, 698, 715
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 6 cut(s) 98, 368, 589, 773, 872, 892
HpyF10VI GCNNNNNNNGC 8 cut(s) 117, 134, 489, 601, 766, 905, 993, 999
HpyF3I CTNAG 8 cut(s) 67, 558, 689, 801, 878, 921, 941, 1004
Hsp92I GRCGYC 1 cut(s) 637
Hsp92II CATG 3 cut(s) 314, 779, 869
HspAI GCGC 1 cut(s) 637
KasI GGCGCC 1 cut(s) 636
Ksp22I TGATCA 3 cut(s) 457, 694, 778
Kzo9I GATC 6 cut(s) 457, 694, 778, 894, 930, 949
LmnI GCTCC 1 cut(s) 496
LpnPI CCDG 7 cut(s) 14, 41, 66, 87, 213, 240, 507
Lsp1109I GCAGC 5 cut(s) 37, 601, 604, 796, 856
LweI GCATC 1 cut(s) 795
MaeI CTAG 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 157
MalI GATC 6 cut(s) 459, 696, 780, 896, 932, 951
MboI GATC 6 cut(s) 457, 694, 778, 894, 930, 949
MboII GAAGA 6 cut(s) 190, 365, 368, 461, 482, 517
MflI RGATCY 1 cut(s) 930
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 6 cut(s) 173, 207, 241, 273, 290, 795
MluNI TGGCCA 1 cut(s) 296
Mly113I GGCGCC 1 cut(s) 637
MlyI GAGTC 1 cut(s) 371
MmeI TCCRAC 2 cut(s) 52, 426
MnlI CCTC 7 cut(s) 352, 428, 567, 898, 929, 983, 1013
Mox20I TGGCCA 1 cut(s) 296
MscI TGGCCA 1 cut(s) 296
MseI TTAA 6 cut(s) 210, 288, 669, 789, 815, 1027
MslI CAYNNNNRTG 1 cut(s) 753
Msp20I TGGCCA 1 cut(s) 296
MspI CCGG 1 cut(s) 494
MspR9I CCNGG 3 cut(s) 29, 228, 494
Mva1269I GAATGC 2 cut(s) 111, 835
MvaI CCWGG 2 cut(s) 29, 228
MwoI GCNNNNNNNGC 8 cut(s) 117, 134, 489, 601, 766, 905, 993, 999
NarI GGCGCC 1 cut(s) 637
NciI CCSGG 1 cut(s) 494
NdeI CATATG 1 cut(s) 1013
NdeII GATC 6 cut(s) 457, 694, 778, 894, 930, 949
NlaIII CATG 3 cut(s) 314, 779, 869
NlaIV GGNNCC 2 cut(s) 498, 638
NmuCI GTSAC 1 cut(s) 157
NspI RCATGY 1 cut(s) 869
PctI GAATGC 2 cut(s) 111, 835
PfeI GAWTC 1 cut(s) 306
PkrI GCNGC 6 cut(s) 52, 591, 594, 786, 871, 995
PleI GAGTC 1 cut(s) 370
PluTI GGCGCC 1 cut(s) 640
PpsI GAGTC 1 cut(s) 370
PshAI GACNNNNGTC 1 cut(s) 1014
PshBI ATTAAT 1 cut(s) 210
Psp6I CCWGG 2 cut(s) 27, 226
PspGI CCWGG 2 cut(s) 27, 226
PspN4I GGNNCC 2 cut(s) 498, 638
PstI CTGCAG 1 cut(s) 894
PsuI RGATCY 1 cut(s) 930
RseI CAYNNNNRTG 1 cut(s) 753
SaqAI TTAA 6 cut(s) 210, 288, 669, 789, 815, 1027
SatI GCNGC 6 cut(s) 51, 590, 593, 785, 870, 994
Sau3AI GATC 6 cut(s) 457, 694, 778, 894, 930, 949
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 3 cut(s) 29, 228, 494
SetI ASST 6 cut(s) 149, 380, 597, 771, 789, 920
SfaNI GCATC 1 cut(s) 795
SfcI CTRYAG 1 cut(s) 890
SfoI GGCGCC 1 cut(s) 638
SmiMI CAYNNNNRTG 1 cut(s) 753
SmlI CTYRAG 2 cut(s) 190, 809
SmoI CTYRAG 2 cut(s) 190, 809
Sse9I AATT 6 cut(s) 173, 207, 241, 273, 290, 795
SsiI CCGC 2 cut(s) 967, 994
SspDI GGCGCC 1 cut(s) 636
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 3 cut(s) 27, 226, 492
StyI CCWWGG 2 cut(s) 297, 514
TaaI ACNGT 1 cut(s) 61
TaqI TCGA 2 cut(s) 14, 579
TasI AATT 6 cut(s) 173, 207, 241, 273, 290, 795
TauI GCSGC 1 cut(s) 996
TfiI GAWTC 1 cut(s) 306
Tru1I TTAA 6 cut(s) 210, 288, 669, 789, 815, 1027
Tru9I TTAA 6 cut(s) 210, 288, 669, 789, 815, 1027
TscAI CASTG 3 cut(s) 64, 85, 490
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 5 cut(s) 50, 589, 592, 784, 869
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 3 cut(s) 250, 579, 876
TspGWI ACGGA 2 cut(s) 362, 662
TspRI CASTG 3 cut(s) 64, 85, 490
VspI ATTAAT 1 cut(s) 210
XceI RCATGY 1 cut(s) 869
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.