RLG00000002115
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000615
Physical Location & Seq
Forward (+)
25724461 .. 25727139
2679 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002115

Sequence Viewer

Length: 1026 bp
ATGGATGGACCTTCGATTGATGTTGACTGGGGACTTCCCTTTTCTAATGCTGCTCGTACTATGGTCTTAGTTGGACGCACTGGTAATGGAAAAAGTGCAACAGGCAACAGCATTCTTGGCAGAAAAGCCTTCATATCCAAGCGTAGCTCTAGTGGTGTCACGACCGCTACTGAATTGAAGACTGCTATCTTGGAAGATGGACAACAAATTAATGTTATAGACACTCCTGGTCTTTTTGATAATTCTGCCAAATCAGACTTTATTGGCAAAGAAATTGCCAAATGCATTAAATTGGCCGAGGATGGGATCCATGCTGTTCTTGTGGTTCTCTCAACTAGAACTCGCTTTACAAAAGAAGAGGAGTCTGCACTCCGTAGCTTGGAAGCTCTATTTGGAAGTAAAATCTTTGACTATATGATTGTTGTCTTTACCGGAGGAGATGAGTTGGAAGAAAATGATGAGACTTTGGAAGATTATTTGGGCCGTGATTGCCCGGAGCCATTGAAGGGAATCCTTGGTCTGTGTGGAAATCGCTGTGTTCTTTTTGATAACAAGACTACGGATAAAAACAAGAGGGTCGAACAAGTGCAGCGGCTTCTCTCGCTTGTAAACTCGGTTATAGCACAGAATGGTGGGCGGCCATACACAGATGAGATATTTGCTGAAGCGAAGAAAGTGTCTATGAAACTTCGTGATCAACAAGAAGAGGTTGCTTCGAAGGGGTATTCAAAAGGAGAAATAAATCTTTTGAATGAGCAGATGCAGCGTCAATATGATTTGCAGCTTAAACAAATTACTGAGATGCTTGAGTTAAAGATGAGAGTGCATATCATGAAGCTTGAACAAAAGTTAGCAGATGAACATGCTGCACGACTAAAAGTAGAACTGCAGATTGCCCGAGAGGCTCAACAAAGGTCTGAGAATGAGATGCAACGGCTTAGATACGATCTACAAACAAAGAAGCTGATTCGCTATGACAGCGAACGTCCCCGCATAGGTCGCGGAGATATATGTTCTTTAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

342

Amino Acids

38.34

Weight (kDa)

6.11

Isoelectric Point (pI)

39.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 20 - 234 2.6e-81 AIG1 family
MMR_HSR1 PF01926 21 - 127 1.5e-10 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1002
AciI CCGC 5 cut(s) 165, 592, 637, 991, 1002
AclWI GGATC 2 cut(s) 301, 314
AcoI YGGCCR 2 cut(s) 294, 638
AcuI CTGAAG 1 cut(s) 684
AfaI GTAC 1 cut(s) 58
AfiI CCNNNNNNNGG 4 cut(s) 303, 379, 506, 995
AgsI TTSAA 5 cut(s) 178, 505, 729, 751, 842
AjnI CCWGG 1 cut(s) 226
AjuI GAANNNNNNNTTGG 2 cut(s) 375, 407
AluBI AGCT 6 cut(s) 147, 378, 386, 784, 838, 964
AluI AGCT 6 cut(s) 147, 378, 386, 784, 838, 964
Alw26I GTCTC 1 cut(s) 455
AlwI GGATC 2 cut(s) 301, 314
Ama87I CYCGRG 1 cut(s) 897
AoxI GGCC 3 cut(s) 294, 481, 638
ApeKI GCWGC 5 cut(s) 50, 589, 763, 781, 866
ArsI GACNNNNNNTTYG 2 cut(s) 662, 694
AseI ATTAAT 1 cut(s) 210
AspS9I GGNCC 2 cut(s) 8, 481
AsuC2I CCSGG 1 cut(s) 494
AsuII TTCGAA 1 cut(s) 716
AvaI CYCGRG 1 cut(s) 897
AvaII GGWCC 1 cut(s) 8
BamHI GGATCC 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 185
BbvI GCAGC 5 cut(s) 37, 601, 775, 793, 853
BccI CCATC 2 cut(s) 191, 296
BceAI ACGGC 2 cut(s) 468, 950
BciT130I CCWGG 1 cut(s) 228
BclI TGATCA 1 cut(s) 694
BcnI CCSGG 1 cut(s) 494
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 2 cut(s) 150, 336
BfmI CTRYAG 1 cut(s) 887
BglI GCCNNNNNGGC 1 cut(s) 902
BisI GCNGC 7 cut(s) 51, 590, 593, 638, 764, 782, 867
BlsI GCNGC 7 cut(s) 52, 591, 594, 639, 765, 783, 868
Bme1390I CCNGG 2 cut(s) 228, 494
Bme18I GGWCC 1 cut(s) 8
BmeT110I CYCGRG 1 cut(s) 897
BmgT120I GGNCC 2 cut(s) 8, 481
BmiI GGNNCC 2 cut(s) 308, 498
BmrFI CCNGG 2 cut(s) 228, 494
BmrI ACTGGG 1 cut(s) 37
BmsI GCATC 3 cut(s) 750, 792, 918
BmuI ACTGGG 1 cut(s) 37
BpiI GAAGAC 1 cut(s) 185
Bpu14I TTCGAA 1 cut(s) 716
BpuEI CTTGAG 1 cut(s) 827
BpuMI CCSGG 1 cut(s) 494
BsaJI CCNNGG 2 cut(s) 297, 514
BsaWI WCCGGW 1 cut(s) 431
Bsc4I CCNNNNNNNGG 4 cut(s) 303, 379, 506, 995
Bse1I ACTGG 2 cut(s) 32, 85
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 2 cut(s) 297, 514
BseGI GGATG 2 cut(s) 10, 307
BseLI CCNNNNNNNGG 4 cut(s) 303, 379, 506, 995
BseMII CTCAG 2 cut(s) 789, 909
BseNI ACTGG 2 cut(s) 32, 85
BseRI GAGGAG 2 cut(s) 374, 450
BseXI GCAGC 5 cut(s) 37, 601, 775, 793, 853
BsgI GTGCAG 3 cut(s) 351, 608, 852
Bsh1236I CGCG 1 cut(s) 1002
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 3 cut(s) 296, 483, 640
BsiEI CGRYCG 1 cut(s) 165
BsiHKCI CYCGRG 1 cut(s) 897
BsiSI CCGG 2 cut(s) 432, 494
BslFI GGGAC 2 cut(s) 45, 972
BslI CCNNNNNNNGG 4 cut(s) 303, 379, 506, 995
BsmAI GTCTC 1 cut(s) 455
BsmFI GGGAC 2 cut(s) 45, 972
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 3 cut(s) 296, 483, 640
BsoBI CYCGRG 1 cut(s) 897
Bsp119I TTCGAA 1 cut(s) 716
Bsp143I GATC 3 cut(s) 306, 694, 946
BspACI CCGC 5 cut(s) 165, 592, 637, 991, 1002
BspANI GGCC 3 cut(s) 296, 483, 640
BspCNI CTCAG 2 cut(s) 790, 910
BspFNI CGCG 1 cut(s) 1002
BspHI TCATGA 1 cut(s) 831
BspLI GGNNCC 2 cut(s) 308, 498
BspMAI CTGCAG 1 cut(s) 891
BspPI GGATC 2 cut(s) 301, 314
BspT104I TTCGAA 1 cut(s) 716
BsrI ACTGG 2 cut(s) 32, 85
BssECI CCNNGG 2 cut(s) 297, 514
BssMI GATC 3 cut(s) 306, 694, 946
BssT1I CCWWGG 1 cut(s) 514
Bst2UI CCWGG 1 cut(s) 228
Bst6I CTCTTC 2 cut(s) 351, 699
BstBI TTCGAA 1 cut(s) 716
BstDEI CTNAG 4 cut(s) 67, 798, 918, 938
BstF5I GGATG 2 cut(s) 10, 307
BstFNI CGCG 1 cut(s) 1002
BstKTI GATC 3 cut(s) 309, 697, 949
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 3 cut(s) 306, 694, 946
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 7 cut(s) 117, 489, 601, 763, 902, 978, 999
BstNI CCWGG 1 cut(s) 228
BstNSI RCATGY 1 cut(s) 866
BstSCI CCNGG 2 cut(s) 226, 492
BstSFI CTRYAG 1 cut(s) 887
BstUI CGCG 1 cut(s) 1002
BstV1I GCAGC 5 cut(s) 37, 601, 775, 793, 853
BstV2I GAAGAC 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 306
BstYI RGATCY 1 cut(s) 306
BsuRI GGCC 3 cut(s) 296, 483, 640
BtsCI GGATG 2 cut(s) 10, 307
BtsIMutI CAGTG 1 cut(s) 78
CciI TCATGA 1 cut(s) 831
Cfr13I GGNCC 2 cut(s) 8, 481
CseI GACGC 2 cut(s) 84, 755
Csp6I GTAC 1 cut(s) 57
CviAII CATG 3 cut(s) 311, 832, 863
CviQI GTAC 1 cut(s) 57
DdeI CTNAG 4 cut(s) 67, 798, 918, 938
DpnI GATC 3 cut(s) 308, 696, 948
DpnII GATC 3 cut(s) 306, 694, 946
EaeI YGGCCR 2 cut(s) 294, 638
Eam1104I CTCTTC 2 cut(s) 351, 699
EarI CTCTTC 2 cut(s) 351, 699
Eco130I CCWWGG 1 cut(s) 514
Eco47I GGWCC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 684
Eco88I CYCGRG 1 cut(s) 897
EcoRII CCWGG 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 514
EcoT22I ATGCAT 1 cut(s) 287
ErhI CCWWGG 1 cut(s) 514
FaeI CATG 3 cut(s) 314, 835, 866
FaqI GGGAC 2 cut(s) 45, 972
FatI CATG 3 cut(s) 310, 831, 862
FauI CCCGC 1 cut(s) 998
FbaI TGATCA 1 cut(s) 694
Fnu4HI GCNGC 7 cut(s) 51, 590, 593, 638, 764, 782, 867
FokI GGATG 2 cut(s) 17, 314
Fsp4HI GCNGC 7 cut(s) 51, 590, 593, 638, 764, 782, 867
FspBI CTAG 2 cut(s) 150, 336
GluI GCNGC 7 cut(s) 51, 590, 593, 638, 764, 782, 867
HaeIII GGCC 3 cut(s) 296, 483, 640
HapII CCGG 2 cut(s) 432, 494
HgaI GACGC 2 cut(s) 84, 755
Hin1II CATG 3 cut(s) 314, 835, 866
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 836
HinfI GANTC 3 cut(s) 362, 510, 967
HpaII CCGG 2 cut(s) 432, 494
Hpy166II GTNNAC 2 cut(s) 25, 610
Hpy188I TCNGA 2 cut(s) 256, 919
Hpy188III TCNNGA 3 cut(s) 160, 692, 832
Hpy8I GTNNAC 2 cut(s) 25, 610
HpyAV CCTTC 4 cut(s) 21, 139, 499, 712
HpyCH4IV ACGT 1 cut(s) 985
HpyF10VI GCNNNNNNNGC 7 cut(s) 117, 489, 601, 763, 902, 978, 999
HpyF3I CTNAG 4 cut(s) 67, 798, 918, 938
HpySE526I ACGT 1 cut(s) 985
Hsp92II CATG 3 cut(s) 314, 835, 866
Ksp22I TGATCA 1 cut(s) 694
Kzo9I GATC 3 cut(s) 306, 694, 946
LmnI GCTCC 1 cut(s) 496
LpnPI CCDG 7 cut(s) 13, 66, 87, 213, 240, 445, 507
Lsp1109I GCAGC 5 cut(s) 37, 601, 775, 793, 853
LweI GCATC 3 cut(s) 750, 792, 918
MaeI CTAG 2 cut(s) 150, 336
MaeII ACGT 1 cut(s) 985
MaeIII GTNAC 1 cut(s) 157
MalI GATC 3 cut(s) 308, 696, 948
MboI GATC 3 cut(s) 306, 694, 946
MboII GAAGA 7 cut(s) 190, 206, 368, 461, 482, 682, 716
MflI RGATCY 1 cut(s) 306
MluCI AATT 6 cut(s) 173, 207, 241, 273, 290, 792
MlyI GAGTC 1 cut(s) 371
MmeI TCCRAC 2 cut(s) 52, 426
MnlI CCTC 6 cut(s) 292, 352, 428, 567, 700, 895
Mph1103I ATGCAT 1 cut(s) 287
MseI TTAA 5 cut(s) 210, 288, 786, 812, 1019
MspA1I CMGCKG 1 cut(s) 592
MspI CCGG 2 cut(s) 432, 494
MspR9I CCNGG 2 cut(s) 228, 494
Mva1269I GAATGC 1 cut(s) 111
MvaI CCWGG 1 cut(s) 228
MvnI CGCG 1 cut(s) 1002
MwoI GCNNNNNNNGC 7 cut(s) 117, 489, 601, 763, 902, 978, 999
NciI CCSGG 1 cut(s) 494
NdeII GATC 3 cut(s) 306, 694, 946
NlaIII CATG 3 cut(s) 314, 835, 866
NlaIV GGNNCC 2 cut(s) 308, 498
NmeAIII GCCGAG 1 cut(s) 322
NmuCI GTSAC 1 cut(s) 157
NsiI ATGCAT 1 cut(s) 287
NspI RCATGY 1 cut(s) 866
NspV TTCGAA 1 cut(s) 716
PagI TCATGA 1 cut(s) 831
PctI GAATGC 1 cut(s) 111
PfeI GAWTC 2 cut(s) 510, 967
PkrI GCNGC 7 cut(s) 52, 591, 594, 639, 765, 783, 868
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
PshBI ATTAAT 1 cut(s) 210
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 2 cut(s) 308, 498
PspPI GGNCC 2 cut(s) 8, 481
PsrI GAACNNNNNNTAC 2 cut(s) 331, 363
PstI CTGCAG 1 cut(s) 891
PsuI RGATCY 1 cut(s) 306
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
SaqAI TTAA 5 cut(s) 210, 288, 786, 812, 1019
SatI GCNGC 7 cut(s) 51, 590, 593, 638, 764, 782, 867
Sau3AI GATC 3 cut(s) 306, 694, 946
Sau96I GGNCC 2 cut(s) 8, 481
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 2 cut(s) 228, 494
SfaNI GCATC 3 cut(s) 750, 792, 918
SfcI CTRYAG 1 cut(s) 887
SfuI TTCGAA 1 cut(s) 716
SinI GGWCC 1 cut(s) 8
SmlI CTYRAG 1 cut(s) 806
SmoI CTYRAG 1 cut(s) 806
Sse9I AATT 6 cut(s) 173, 207, 241, 273, 290, 792
SsiI CCGC 5 cut(s) 165, 592, 637, 991, 1002
SspMI CTAG 2 cut(s) 150, 336
StyD4I CCNGG 2 cut(s) 226, 492
StyI CCWWGG 1 cut(s) 514
TaiI ACGT 1 cut(s) 988
TaqI TCGA 3 cut(s) 14, 579, 716
TasI AATT 6 cut(s) 173, 207, 241, 273, 290, 792
TauI GCSGC 2 cut(s) 595, 640
TfiI GAWTC 2 cut(s) 510, 967
Tru1I TTAA 5 cut(s) 210, 288, 786, 812, 1019
Tru9I TTAA 5 cut(s) 210, 288, 786, 812, 1019
TscAI CASTG 1 cut(s) 85
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 5 cut(s) 50, 589, 763, 781, 866
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 4 cut(s) 121, 698, 848, 873
TspGWI ACGGA 2 cut(s) 362, 575
TspRI CASTG 1 cut(s) 85
VpaK11BI GGWCC 1 cut(s) 8
VspI ATTAAT 1 cut(s) 210
XceI RCATGY 1 cut(s) 866
XspI CTAG 2 cut(s) 150, 336
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.