Rmu_sc0012733.1_g000005
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012733.1
OG0000615
Physical Location & Seq
Forward (+)
15963 .. 19849
3887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012733.1_g000005.1.cds

Sequence Viewer

Length: 660 bp
atggttaatcaagttcagagtcagctgttgcatcttggacagacaggtctttttgataattctgccaaatcagacttcattggcaaagaaattgtccaaagcattaaattggccaaggatggaatccatgctgttcttgtggttctctcaactaaaactcgcttatctgaagaagaggagtctgcaatccgtagcttggaaactctatttggaagtaaaatctttgactatatgattgttgtctttacgggaggagatgagttggaagaaaatgatcagactttggaagattatttgggccgtgattgcccggagcccttgaaggaaatccttggtctgtgtggaaatcgttgtgtgctttttgataacaagactaaggatgaaagcaagagggtcgaacaagtgcagcagcttctctcgcttgtaaactcagttatagcgcagaatggtgggcgcccatacacggatgagatatttgctgaagttaagaaaggggctatggaacttagtgataaacaagaaggggttgcttctttgaaggggtattcaaaacaagaaatatctcatttgaatgagcagatacagcttgcacatgatcagcagcttaaacaaattactgagatggtatattttcatctgcattttgtatgcatccaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

219

Amino Acids

24.63

Weight (kDa)

4.95

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 45
AccB1I GGYRCC 1 cut(s) 453
AcoI YGGCCR 1 cut(s) 111
AcuI CTGAAG 2 cut(s) 189, 501
AcyI GRCGYC 1 cut(s) 454
AfiI CCNNNNNNNGG 2 cut(s) 196, 463
AgsI TTSAA 4 cut(s) 322, 538, 549, 571
AjuI GAANNNNNNNTTGG 4 cut(s) 59, 91, 192, 224
AluBI AGCT 5 cut(s) 25, 195, 412, 586, 604
AluI AGCT 5 cut(s) 25, 195, 412, 586, 604
AoxI GGCC 2 cut(s) 111, 298
ApeKI GCWGC 3 cut(s) 406, 409, 601
ArsI GACNNNNNNTTYG 2 cut(s) 78, 110
AspLEI GCGC 2 cut(s) 442, 456
AspS9I GGNCC 1 cut(s) 298
AsuC2I CCSGG 1 cut(s) 311
BalI TGGCCA 1 cut(s) 113
BanI GGYRCC 1 cut(s) 453
BanII GRGCYC 1 cut(s) 318
BbvI GCAGC 3 cut(s) 418, 421, 613
BccI CCATC 2 cut(s) 113, 616
BceAI ACGGC 1 cut(s) 285
BcgI CGANNNNNNTGC 2 cut(s) 376, 410
BclI TGATCA 2 cut(s) 274, 595
BcnI CCSGG 1 cut(s) 311
BfoI RGCGCY 1 cut(s) 457
BisI GCNGC 3 cut(s) 407, 410, 602
BlsI GCNGC 3 cut(s) 408, 411, 603
Bme1390I CCNGG 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 298
BmiI GGNNCC 2 cut(s) 315, 455
BmrFI CCNGG 1 cut(s) 311
BmsI GCATC 1 cut(s) 40
BpuMI CCSGG 1 cut(s) 311
BsaHI GRCGYC 1 cut(s) 454
BsaJI CCNNGG 2 cut(s) 114, 331
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 463
BseDI CCNNGG 2 cut(s) 114, 331
BseGI GGATG 4 cut(s) 124, 385, 472, 651
BseLI CCNNNNNNNGG 2 cut(s) 196, 463
BseMII CTCAG 2 cut(s) 444, 609
BseRI GAGGAG 2 cut(s) 191, 267
BseXI GCAGC 3 cut(s) 418, 421, 613
BsgI GTGCAG 1 cut(s) 425
BshFI GGCC 2 cut(s) 113, 300
BshNI GGYRCC 1 cut(s) 453
BsiSI CCGG 1 cut(s) 311
BslI CCNNNNNNNGG 2 cut(s) 196, 463
BsnI GGCC 2 cut(s) 113, 300
Bsp1286I GDGCHC 1 cut(s) 318
Bsp143I GATC 2 cut(s) 274, 595
BspANI GGCC 2 cut(s) 113, 300
BspCNI CTCAG 2 cut(s) 443, 610
BspLI GGNNCC 2 cut(s) 315, 455
BspT107I GGYRCC 1 cut(s) 453
BssECI CCNNGG 2 cut(s) 114, 331
BssMI GATC 2 cut(s) 274, 595
BssNI GRCGYC 1 cut(s) 454
BssT1I CCWWGG 2 cut(s) 114, 331
Bst6I CTCTTC 1 cut(s) 168
BstACI GRCGYC 1 cut(s) 454
BstC8I GCNNGC 1 cut(s) 588
BstDEI CTNAG 4 cut(s) 375, 430, 506, 618
BstF5I GGATG 4 cut(s) 124, 385, 472, 651
BstH2I RGCGCY 1 cut(s) 457
BstHHI GCGC 2 cut(s) 442, 456
BstKTI GATC 2 cut(s) 277, 598
BstMBI GATC 2 cut(s) 274, 595
BstMWI GCNNNNNNNGC 3 cut(s) 306, 418, 583
BstSCI CCNGG 1 cut(s) 309
BstV1I GCAGC 3 cut(s) 418, 421, 613
BsuRI GGCC 2 cut(s) 113, 300
BtsCI GGATG 4 cut(s) 124, 385, 472, 651
Cac8I GCNNGC 1 cut(s) 588
CfoI GCGC 2 cut(s) 442, 456
Cfr13I GGNCC 1 cut(s) 298
CviAII CATG 2 cut(s) 128, 593
CviJI RGCY 9 cut(s) 25, 113, 195, 300, 316, 412, 497, 586, 604
CviKI_1 RGCY 9 cut(s) 25, 113, 195, 300, 316, 412, 497, 586, 604
DdeI CTNAG 4 cut(s) 375, 430, 506, 618
DinI GGCGCC 1 cut(s) 455
DpnI GATC 2 cut(s) 276, 597
DpnII GATC 2 cut(s) 274, 595
DrdI GACNNNNNNGTC 1 cut(s) 45
DseDI GACNNNNNNGTC 1 cut(s) 45
EaeI YGGCCR 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco130I CCWWGG 2 cut(s) 114, 331
Eco24I GRGCYC 1 cut(s) 318
Eco57I CTGAAG 2 cut(s) 189, 501
EcoT14I CCWWGG 2 cut(s) 114, 331
EcoT22I ATGCAT 1 cut(s) 653
EcoT38I GRGCYC 1 cut(s) 318
EgeI GGCGCC 1 cut(s) 455
EheI GGCGCC 1 cut(s) 455
ErhI CCWWGG 2 cut(s) 114, 331
FaeI CATG 2 cut(s) 131, 596
FaiI YATR 9 cut(s) 129, 231, 233, 437, 460, 500, 594, 628, 649
FatI CATG 2 cut(s) 127, 592
FbaI TGATCA 2 cut(s) 274, 595
Fnu4HI GCNGC 3 cut(s) 407, 410, 602
FokI GGATG 4 cut(s) 131, 392, 479, 638
FriOI GRGCYC 1 cut(s) 318
Fsp4HI GCNGC 3 cut(s) 407, 410, 602
GlaI GCGC 2 cut(s) 441, 455
GluI GCNGC 3 cut(s) 407, 410, 602
HaeII RGCGCY 1 cut(s) 457
HaeIII GGCC 2 cut(s) 113, 300
HapII CCGG 1 cut(s) 311
HhaI GCGC 2 cut(s) 442, 456
Hin1I GRCGYC 1 cut(s) 454
Hin1II CATG 2 cut(s) 131, 596
Hin6I GCGC 2 cut(s) 440, 454
HinP1I GCGC 2 cut(s) 440, 454
HinfI GANTC 3 cut(s) 19, 123, 179
HpaII CCGG 1 cut(s) 311
Hpy166II GTNNAC 1 cut(s) 427
Hpy188I TCNGA 4 cut(s) 18, 73, 169, 279
Hpy8I GTNNAC 1 cut(s) 427
HpyAV CCTTC 3 cut(s) 316, 515, 532
HpyCH4V TGCA 6 cut(s) 31, 185, 406, 590, 640, 651
HpyF10VI GCNNNNNNNGC 3 cut(s) 306, 418, 583
HpyF3I CTNAG 4 cut(s) 375, 430, 506, 618
Hsp92I GRCGYC 1 cut(s) 454
Hsp92II CATG 2 cut(s) 131, 596
HspAI GCGC 2 cut(s) 440, 454
KasI GGCGCC 1 cut(s) 453
Ksp22I TGATCA 2 cut(s) 274, 595
Kzo9I GATC 2 cut(s) 274, 595
LmnI GCTCC 1 cut(s) 313
LpnPI CCDG 2 cut(s) 30, 324
Lsp1109I GCAGC 3 cut(s) 418, 421, 613
LweI GCATC 1 cut(s) 40
MalI GATC 2 cut(s) 276, 597
MboI GATC 2 cut(s) 274, 595
MboII GAAGA 4 cut(s) 182, 185, 278, 299
MhlI GDGCHC 1 cut(s) 318
MlsI TGGCCA 1 cut(s) 113
MluCI AATT 4 cut(s) 58, 90, 107, 612
MluNI TGGCCA 1 cut(s) 113
Mly113I GGCGCC 1 cut(s) 454
MlyI GAGTC 2 cut(s) 28, 188
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 3 cut(s) 169, 245, 384
Mox20I TGGCCA 1 cut(s) 113
Mph1103I ATGCAT 1 cut(s) 653
MscI TGGCCA 1 cut(s) 113
MseI TTAA 4 cut(s) 6, 105, 486, 606
MslI CAYNNNNRTG 1 cut(s) 570
Msp20I TGGCCA 1 cut(s) 113
MspA1I CMGCKG 1 cut(s) 25
MspI CCGG 1 cut(s) 311
MspR9I CCNGG 1 cut(s) 311
MwoI GCNNNNNNNGC 3 cut(s) 306, 418, 583
NarI GGCGCC 1 cut(s) 454
NciI CCSGG 1 cut(s) 311
NdeII GATC 2 cut(s) 274, 595
NlaIII CATG 2 cut(s) 131, 596
NlaIV GGNNCC 2 cut(s) 315, 455
NsiI ATGCAT 1 cut(s) 653
PfeI GAWTC 1 cut(s) 123
PkrI GCNGC 3 cut(s) 408, 411, 603
PleI GAGTC 2 cut(s) 27, 187
PluTI GGCGCC 1 cut(s) 457
PpsI GAGTC 2 cut(s) 27, 187
PspN4I GGNNCC 2 cut(s) 315, 455
PspPI GGNCC 1 cut(s) 298
PvuII CAGCTG 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 570
SaqAI TTAA 4 cut(s) 6, 105, 486, 606
SatI GCNGC 3 cut(s) 407, 410, 602
Sau3AI GATC 2 cut(s) 274, 595
Sau96I GGNCC 1 cut(s) 298
SchI GAGTC 2 cut(s) 28, 188
ScrFI CCNGG 1 cut(s) 311
SduI GDGCHC 1 cut(s) 318
SetI ASST 6 cut(s) 27, 49, 197, 414, 588, 606
SfaNI GCATC 1 cut(s) 40
SfoI GGCGCC 1 cut(s) 455
SmiMI CAYNNNNRTG 1 cut(s) 570
Sse9I AATT 4 cut(s) 58, 90, 107, 612
SspDI GGCGCC 1 cut(s) 453
StyD4I CCNGG 1 cut(s) 309
StyI CCWWGG 2 cut(s) 114, 331
TaqI TCGA 1 cut(s) 396
TasI AATT 4 cut(s) 58, 90, 107, 612
TfiI GAWTC 1 cut(s) 123
Tru1I TTAA 4 cut(s) 6, 105, 486, 606
Tru9I TTAA 4 cut(s) 6, 105, 486, 606
TseI GCWGC 3 cut(s) 406, 409, 601
TspDTI ATGAA 3 cut(s) 67, 396, 623
TspGWI ACGGA 2 cut(s) 179, 479
Zsp2I ATGCAT 1 cut(s) 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.