RLG00000023248
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000615
Physical Location & Seq
Forward (+)
20502429 .. 20505108
2680 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023248

Sequence Viewer

Length: 1026 bp
ATGGATGGAAGTTCGATTTATGCTGACCGGGAACTTCCCTTTTCTAATGCTGCTCGCACTGTGGTCTTAGTTGGACGCACTGGTAATGGAAAAAGTGCAACAGGCAACAGCATTCTTGGCGAAAAAGCCTTCAATGCCAAGCGTAGCTCTAGTGCTGTGACGACCACTACAGAATTGAAGACTGCTATCTTGAGAGATGGACAACAAATTAATGTTATAGACACTCCTGGTCTTTTTGATAATTCTGCCAATTCAGACTTCATTGGCAAAGAAATTGTCCAAAGCATTAAATTAGCAAAGGATGGAATCCATGCTGTTCTTGTGGTTCTCTCAACTAAAACTCGCTTATCAGAAGAAGAGGAGTTTGCAATCCGTAGCTTGGAAACTCTATTTGGAAGTAAAATCTTTGACTATATGATTGTTGTCTTTACGGGAGGAGATGAGTTGGAAGAAAATGATCAGACTTTGGAAGATTATTTGGGCCGTGATTGCCCAGAACCTTTGAAGGAAATCCTTGGTTTGTGTGGAAATCGTCGTGTGCTTTTCGATAACAAGACTAAGGATGAAAGCAAGAGGGTCGAACAAGTGCAGCAGCTTCTCTCGCTTGTAAACTCGGTTATAGCACACAATGGTGGGCAGCCATACACAGATGAGATATTTGCTGAAGTTAAGAAAGGGGCTATGAAACTTCGTGATCAACAAGAAGGGCATACTTCTTTGAAGGGGTATTCAAAACGAGAAATATCTCATTTGAATGAGCAGATACAGCTTGCACATGATCAGCAGCTTAAACAAATTACTGAGATGGGTGAGTTAAAGATGAGAGAGAATACCATGATGCTTGAACAAAAGTTAGCAGATGAACATGCTGCACGACGAAGAATAGAACAGATTGCCCAAGAGGTTCAACAAAGGTCTGAGATTGAGATCCGAGGGCTTAGATACGATCTACAAGAAGAGAAGCAAATATGCGACCGAAACGGTAGACGCTGCATAGGCCACAACTACAAATGTTCTATTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

342

Amino Acids

38.38

Weight (kDa)

5.67

Isoelectric Point (pI)

53.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 19 - 233 2.7e-79 AIG1 family
MMR_HSR1 PF01926 20 - 125 3.6e-11 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 985
AclWI GGATC 1 cut(s) 922
AcuI CTGAAG 1 cut(s) 684
AfiI CCNNNNNNNGG 1 cut(s) 379
AgsI TTSAA 8 cut(s) 133, 178, 505, 721, 732, 754, 845, 908
AjnI CCWGG 1 cut(s) 226
AjuI GAANNNNNNNTTGG 4 cut(s) 242, 274, 375, 407
AleI CACNNNNGTG 1 cut(s) 630
AluBI AGCT 5 cut(s) 147, 378, 595, 769, 787
AluI AGCT 5 cut(s) 147, 378, 595, 769, 787
AlwI GGATC 1 cut(s) 922
AoxI GGCC 2 cut(s) 481, 997
ApeKI GCWGC 7 cut(s) 50, 589, 592, 637, 784, 869, 990
ArsI GACNNNNNNTTYG 2 cut(s) 261, 293
AseI ATTAAT 1 cut(s) 210
AspS9I GGNCC 1 cut(s) 481
AsuC2I CCSGG 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 821
BbsI GAAGAC 1 cut(s) 185
BbvI GCAGC 7 cut(s) 37, 601, 604, 649, 796, 856, 977
BccI CCATC 3 cut(s) 191, 296, 799
BceAI ACGGC 1 cut(s) 468
BcgI CGANNNNNNTGC 2 cut(s) 559, 593
BciT130I CCWGG 1 cut(s) 228
BclI TGATCA 3 cut(s) 457, 694, 778
BcnI CCSGG 1 cut(s) 29
BfaI CTAG 1 cut(s) 150
BfmI CTRYAG 1 cut(s) 168
BisI GCNGC 7 cut(s) 51, 590, 593, 638, 785, 870, 991
BlsI GCNGC 7 cut(s) 52, 591, 594, 639, 786, 871, 992
Bme1390I CCNGG 2 cut(s) 29, 228
BmgT120I GGNCC 1 cut(s) 481
BmrFI CCNGG 2 cut(s) 29, 228
BmsI GCATC 1 cut(s) 828
BpiI GAAGAC 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 211
BpuMI CCSGG 1 cut(s) 29
BsaBI GATNNNNATC 1 cut(s) 926
BsaJI CCNNGG 2 cut(s) 514, 931
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse1I ACTGG 1 cut(s) 85
Bse8I GATNNNNATC 1 cut(s) 926
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 2 cut(s) 514, 931
BseGI GGATG 3 cut(s) 10, 307, 568
BseJI GATNNNNATC 1 cut(s) 926
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMII CTCAG 2 cut(s) 792, 909
BseNI ACTGG 1 cut(s) 85
BseRI GAGGAG 2 cut(s) 374, 450
BseXI GCAGC 7 cut(s) 37, 601, 604, 649, 796, 856, 977
BsgI GTGCAG 2 cut(s) 608, 855
Bsh1285I CGRYCG 1 cut(s) 976
BshFI GGCC 2 cut(s) 483, 999
BsiEI CGRYCG 1 cut(s) 976
BsiSI CCGG 1 cut(s) 28
BslI CCNNNNNNNGG 1 cut(s) 379
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 2 cut(s) 483, 999
Bsp143I GATC 5 cut(s) 457, 694, 778, 927, 946
BspANI GGCC 2 cut(s) 483, 999
BspCNI CTCAG 2 cut(s) 793, 910
BspPI GGATC 1 cut(s) 922
BsrI ACTGG 1 cut(s) 85
BssECI CCNNGG 2 cut(s) 514, 931
BssMI GATC 5 cut(s) 457, 694, 778, 927, 946
BssT1I CCWWGG 1 cut(s) 514
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 2 cut(s) 61, 983
Bst6I CTCTTC 2 cut(s) 351, 951
BstC8I GCNNGC 2 cut(s) 55, 771
BstDEI CTNAG 5 cut(s) 67, 558, 801, 918, 938
BstF5I GGATG 3 cut(s) 10, 307, 568
BstKTI GATC 5 cut(s) 460, 697, 781, 930, 949
BstMBI GATC 5 cut(s) 457, 694, 778, 927, 946
BstMCI CGRYCG 1 cut(s) 976
BstMWI GCNNNNNNNGC 6 cut(s) 117, 134, 489, 601, 766, 996
BstNI CCWGG 1 cut(s) 228
BstNSI RCATGY 1 cut(s) 869
BstSCI CCNGG 2 cut(s) 27, 226
BstSFI CTRYAG 1 cut(s) 168
BstV1I GCAGC 7 cut(s) 37, 601, 604, 649, 796, 856, 977
BstV2I GAAGAC 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 927
BstYI RGATCY 1 cut(s) 927
BsuRI GGCC 2 cut(s) 483, 999
BtsCI GGATG 3 cut(s) 10, 307, 568
BtsIMutI CAGTG 2 cut(s) 57, 78
Cac8I GCNNGC 2 cut(s) 55, 771
Cfr13I GGNCC 1 cut(s) 481
CseI GACGC 2 cut(s) 84, 996
CviAII CATG 4 cut(s) 311, 776, 835, 866
DdeI CTNAG 5 cut(s) 67, 558, 801, 918, 938
DpnI GATC 5 cut(s) 459, 696, 780, 929, 948
DpnII GATC 5 cut(s) 457, 694, 778, 927, 946
Eam1104I CTCTTC 2 cut(s) 351, 951
EarI CTCTTC 2 cut(s) 351, 951
Eco130I CCWWGG 1 cut(s) 514
Eco57I CTGAAG 1 cut(s) 684
EcoRII CCWGG 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 514
ErhI CCWWGG 1 cut(s) 514
FaeI CATG 4 cut(s) 314, 779, 838, 869
FatI CATG 4 cut(s) 310, 775, 834, 865
FbaI TGATCA 3 cut(s) 457, 694, 778
FblI GTMKAC 1 cut(s) 985
Fnu4HI GCNGC 7 cut(s) 51, 590, 593, 638, 785, 870, 991
FokI GGATG 3 cut(s) 17, 314, 575
Fsp4HI GCNGC 7 cut(s) 51, 590, 593, 638, 785, 870, 991
FspBI CTAG 1 cut(s) 150
GluI GCNGC 7 cut(s) 51, 590, 593, 638, 785, 870, 991
HaeIII GGCC 2 cut(s) 483, 999
HapII CCGG 1 cut(s) 28
HgaI GACGC 2 cut(s) 84, 996
Hin1II CATG 4 cut(s) 314, 779, 838, 869
HinfI GANTC 1 cut(s) 306
HpaII CCGG 1 cut(s) 28
HphI GGTGA 1 cut(s) 821
Hpy166II GTNNAC 2 cut(s) 610, 986
Hpy188I TCNGA 5 cut(s) 256, 352, 462, 919, 932
Hpy188III TCNNGA 2 cut(s) 190, 692
Hpy8I GTNNAC 2 cut(s) 610, 986
Hpy99I CGWCG 2 cut(s) 537, 879
HpyAV CCTTC 4 cut(s) 139, 499, 698, 715
HpyCH4III ACNGT 2 cut(s) 61, 983
HpyCH4V TGCA 6 cut(s) 98, 368, 589, 773, 872, 993
HpyF10VI GCNNNNNNNGC 6 cut(s) 117, 134, 489, 601, 766, 996
HpyF3I CTNAG 5 cut(s) 67, 558, 801, 918, 938
Hsp92II CATG 4 cut(s) 314, 779, 838, 869
Ksp22I TGATCA 3 cut(s) 457, 694, 778
Kzo9I GATC 5 cut(s) 457, 694, 778, 927, 946
LpnPI CCDG 6 cut(s) 41, 66, 87, 213, 240, 507
Lsp1109I GCAGC 7 cut(s) 37, 601, 604, 649, 796, 856, 977
LweI GCATC 1 cut(s) 828
MaeI CTAG 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 157
MalI GATC 5 cut(s) 459, 696, 780, 929, 948
MboI GATC 5 cut(s) 457, 694, 778, 927, 946
MboII GAAGA 7 cut(s) 190, 365, 368, 461, 482, 891, 968
MflI RGATCY 1 cut(s) 927
MluCI AATT 7 cut(s) 173, 207, 241, 250, 273, 290, 795
MmeI TCCRAC 2 cut(s) 52, 426
MnlI CCTC 5 cut(s) 352, 428, 567, 895, 926
MseI TTAA 6 cut(s) 210, 288, 669, 789, 815, 1024
MslI CAYNNNNRTG 2 cut(s) 630, 753
MspI CCGG 1 cut(s) 28
MspR9I CCNGG 2 cut(s) 29, 228
Mva1269I GAATGC 1 cut(s) 111
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 6 cut(s) 117, 134, 489, 601, 766, 996
NciI CCSGG 1 cut(s) 29
NdeII GATC 5 cut(s) 457, 694, 778, 927, 946
NlaIII CATG 4 cut(s) 314, 779, 838, 869
NmuCI GTSAC 1 cut(s) 157
NspI RCATGY 1 cut(s) 869
OliI CACNNNNGTG 1 cut(s) 630
PctI GAATGC 1 cut(s) 111
PfeI GAWTC 1 cut(s) 306
PkrI GCNGC 7 cut(s) 52, 591, 594, 639, 786, 871, 992
PshBI ATTAAT 1 cut(s) 210
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspPI GGNCC 1 cut(s) 481
PsuI RGATCY 1 cut(s) 927
RseI CAYNNNNRTG 2 cut(s) 630, 753
SaqAI TTAA 6 cut(s) 210, 288, 669, 789, 815, 1024
SatI GCNGC 7 cut(s) 51, 590, 593, 638, 785, 870, 991
Sau3AI GATC 5 cut(s) 457, 694, 778, 927, 946
Sau96I GGNCC 1 cut(s) 481
ScrFI CCNGG 2 cut(s) 29, 228
SetI ASST 8 cut(s) 149, 380, 502, 597, 771, 789, 906, 917
SfaNI GCATC 1 cut(s) 828
SfcI CTRYAG 1 cut(s) 168
SmiMI CAYNNNNRTG 2 cut(s) 630, 753
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
Sse9I AATT 7 cut(s) 173, 207, 241, 250, 273, 290, 795
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 2 cut(s) 27, 226
StyI CCWWGG 1 cut(s) 514
TaaI ACNGT 2 cut(s) 61, 983
TaqI TCGA 3 cut(s) 14, 546, 579
TaqII GACCGA 1 cut(s) 990
TasI AATT 7 cut(s) 173, 207, 241, 250, 273, 290, 795
TfiI GAWTC 1 cut(s) 306
Tru1I TTAA 6 cut(s) 210, 288, 669, 789, 815, 1024
Tru9I TTAA 6 cut(s) 210, 288, 669, 789, 815, 1024
TscAI CASTG 2 cut(s) 64, 85
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 7 cut(s) 50, 589, 592, 637, 784, 869, 990
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 4 cut(s) 250, 579, 698, 876
TspGWI ACGGA 1 cut(s) 362
TspRI CASTG 2 cut(s) 64, 85
VspI ATTAAT 1 cut(s) 210
XceI RCATGY 1 cut(s) 869
XmiI GTMKAC 1 cut(s) 985
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.