RchiOBHm_Chr7g0229761
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000615
Physical Location & Seq
Forward (+)
53296752 .. 53298172
1421 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20584

Sequence Viewer

Length: 540 bp
ATGATGGGTAGAAGTTCGATTGATGATGACTGGGAGCTTCCCTTTTCCAATGCTGCTCACACTGTGGTCTTAGTTGGACGCACTAGTAATGGAAAAAGTGCAACAGGCAACAGCATTCTTGGCAAAAAATCCTTCAGTTCCAAGCATAGCTCTAATAGTGTCATGAGCAATTGTGAATTGAAGACTGCTATCTTGAGAGATGGACAAGAAGCTAATGCCATAGGCAATCCTGGTCTTTTTGAATATTCTGCCAGATCAGACTTTATTGGCAAAGAAATTGTCAAATGCATTAGTTTGGCTAAGGATGGGATCCATACTGTTCTTGTGGACTTGTGGTTTTCTCAACTAGACCTCGCTTTTCACAAGAAGAGGAAAGAAAATGATGAGACTTTGGAAGATTATTTGGGCCGTGATTGCCCGGAGCTTTTAAAGAGGGTCGAACAAGTGCAGCAGCATCTCTCACTTGTAAACTCGGTTATAGCACAGAATGGCGGGCGGCCATACATGGATGGGATATTTGCTGAAGTGAAGGGGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

179

Amino Acids

19.7

Weight (kDa)

6.2

Isoelectric Point (pI)

33.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 21 - 112 5.1e-30 AIG1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 492, 496
AclWI GGATC 2 cut(s) 304, 317
AcoI YGGCCR 1 cut(s) 497
AcuI CTGAAG 1 cut(s) 118
AdeI CACNNNGTG 1 cut(s) 64
AgsI TTSAA 2 cut(s) 181, 242
AhlI ACTAGT 1 cut(s) 83
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 4 cut(s) 37, 150, 212, 424
AluI AGCT 4 cut(s) 37, 150, 212, 424
Alw26I GTCTC 1 cut(s) 380
AlwI GGATC 2 cut(s) 304, 317
AoxI GGCC 2 cut(s) 406, 497
ApeKI GCWGC 3 cut(s) 53, 448, 451
ArsI GACNNNNNNTTYG 2 cut(s) 264, 296
AspS9I GGNCC 1 cut(s) 406
AsuC2I CCSGG 1 cut(s) 419
BamHI GGATCC 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 188
BbvI GCAGC 3 cut(s) 40, 460, 463
BccI CCATC 3 cut(s) 194, 299, 503
BceAI ACGGC 1 cut(s) 393
BciT130I CCWGG 1 cut(s) 231
BcnI CCSGG 1 cut(s) 419
BcoDI GTCTC 1 cut(s) 380
BcuI ACTAGT 1 cut(s) 83
BfaI CTAG 2 cut(s) 84, 347
BisI GCNGC 4 cut(s) 54, 449, 452, 497
BlsI GCNGC 4 cut(s) 55, 450, 453, 498
Bme1390I CCNGG 2 cut(s) 231, 419
BmgT120I GGNCC 1 cut(s) 406
BmiI GGNNCC 1 cut(s) 311
BmrFI CCNGG 2 cut(s) 231, 419
BmrI ACTGGG 1 cut(s) 40
BmsI GCATC 1 cut(s) 463
BmuI ACTGGG 1 cut(s) 40
BpiI GAAGAC 1 cut(s) 188
Bpu10I CCTNAGC 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 214
BpuMI CCSGG 1 cut(s) 419
Bse1I ACTGG 1 cut(s) 35
BseBI CCWGG 1 cut(s) 231
BseGI GGATG 2 cut(s) 310, 514
BseNI ACTGG 1 cut(s) 35
BseXI GCAGC 3 cut(s) 40, 460, 463
BsgI GTGCAG 1 cut(s) 467
BshFI GGCC 2 cut(s) 408, 499
BsiSI CCGG 1 cut(s) 419
BsmAI GTCTC 1 cut(s) 380
BsmI GAATGC 1 cut(s) 114
BsnI GGCC 2 cut(s) 408, 499
Bsp143I GATC 2 cut(s) 254, 309
BspACI CCGC 2 cut(s) 492, 496
BspANI GGCC 2 cut(s) 408, 499
BspHI TCATGA 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 311
BspPI GGATC 2 cut(s) 304, 317
BsrI ACTGG 1 cut(s) 35
BssMI GATC 2 cut(s) 254, 309
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 2 cut(s) 64, 319
Bst6I CTCTTC 1 cut(s) 362
BstC8I GCNNGC 1 cut(s) 494
BstDEI CTNAG 2 cut(s) 70, 300
BstF5I GGATG 2 cut(s) 310, 514
BstKTI GATC 2 cut(s) 257, 312
BstMAI GTCTC 1 cut(s) 380
BstMBI GATC 2 cut(s) 254, 309
BstMWI GCNNNNNNNGC 2 cut(s) 120, 414
BstNI CCWGG 1 cut(s) 231
BstSCI CCNGG 2 cut(s) 229, 417
BstV1I GCAGC 3 cut(s) 40, 460, 463
BstV2I GAAGAC 1 cut(s) 188
BstX2I RGATCY 1 cut(s) 309
BstYI RGATCY 1 cut(s) 309
BsuRI GGCC 2 cut(s) 408, 499
BtsCI GGATG 2 cut(s) 310, 514
BtsIMutI CAGTG 1 cut(s) 60
Cac8I GCNNGC 1 cut(s) 494
CciI TCATGA 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 406
CseI GACGC 1 cut(s) 87
CviAII CATG 2 cut(s) 163, 505
CviJI RGCY 8 cut(s) 37, 150, 212, 299, 408, 424, 499, 535
CviKI_1 RGCY 8 cut(s) 37, 150, 212, 299, 408, 424, 499, 535
DdeI CTNAG 2 cut(s) 70, 300
DpnI GATC 2 cut(s) 256, 311
DpnII GATC 2 cut(s) 254, 309
DraI TTTAAA 1 cut(s) 429
DraIII CACNNNGTG 1 cut(s) 64
EaeI YGGCCR 1 cut(s) 497
Eam1104I CTCTTC 1 cut(s) 362
EarI CTCTTC 1 cut(s) 362
Eco57I CTGAAG 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 229
EcoT22I ATGCAT 1 cut(s) 290
FaeI CATG 2 cut(s) 166, 508
FaiI YATR 8 cut(s) 147, 164, 221, 315, 479, 502, 506, 538
FatI CATG 2 cut(s) 162, 504
FauI CCCGC 1 cut(s) 485
Fnu4HI GCNGC 4 cut(s) 54, 449, 452, 497
FokI GGATG 2 cut(s) 317, 521
Fsp4HI GCNGC 4 cut(s) 54, 449, 452, 497
FspBI CTAG 2 cut(s) 84, 347
GluI GCNGC 4 cut(s) 54, 449, 452, 497
HaeIII GGCC 2 cut(s) 408, 499
HapII CCGG 1 cut(s) 419
HgaI GACGC 1 cut(s) 87
Hin1II CATG 2 cut(s) 166, 508
HpaII CCGG 1 cut(s) 419
Hpy166II GTNNAC 2 cut(s) 328, 469
Hpy188I TCNGA 1 cut(s) 259
Hpy188III TCNNGA 2 cut(s) 163, 193
Hpy8I GTNNAC 2 cut(s) 328, 469
HpyAV CCTTC 2 cut(s) 142, 523
HpyCH4III ACNGT 2 cut(s) 64, 319
HpyCH4V TGCA 3 cut(s) 101, 288, 448
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 414
HpyF3I CTNAG 2 cut(s) 70, 300
Hsp92II CATG 2 cut(s) 166, 508
Kzo9I GATC 2 cut(s) 254, 309
LmnI GCTCC 2 cut(s) 34, 421
LpnPI CCDG 6 cut(s) 16, 90, 216, 243, 265, 432
Lsp1109I GCAGC 3 cut(s) 40, 460, 463
LweI GCATC 1 cut(s) 463
MaeI CTAG 2 cut(s) 84, 347
MalI GATC 2 cut(s) 256, 311
MboI GATC 2 cut(s) 254, 309
MboII GAAGA 3 cut(s) 193, 379, 407
MfeI CAATTG 1 cut(s) 169
MflI RGATCY 1 cut(s) 309
MluCI AATT 3 cut(s) 169, 176, 276
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 3 cut(s) 362, 363, 426
Mph1103I ATGCAT 1 cut(s) 290
MseI TTAA 1 cut(s) 428
MspI CCGG 1 cut(s) 419
MspR9I CCNGG 2 cut(s) 231, 419
MunI CAATTG 1 cut(s) 169
Mva1269I GAATGC 1 cut(s) 114
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 120, 414
NciI CCSGG 1 cut(s) 419
NdeII GATC 2 cut(s) 254, 309
NlaIII CATG 2 cut(s) 166, 508
NlaIV GGNNCC 1 cut(s) 311
NsiI ATGCAT 1 cut(s) 290
PagI TCATGA 1 cut(s) 162
PctI GAATGC 1 cut(s) 114
PkrI GCNGC 4 cut(s) 55, 450, 453, 498
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 311
PspPI GGNCC 1 cut(s) 406
PsuI RGATCY 1 cut(s) 309
SaqAI TTAA 1 cut(s) 428
SatI GCNGC 4 cut(s) 54, 449, 452, 497
Sau3AI GATC 2 cut(s) 254, 309
Sau96I GGNCC 1 cut(s) 406
ScrFI CCNGG 2 cut(s) 231, 419
SetI ASST 5 cut(s) 39, 152, 214, 354, 426
SfaNI GCATC 1 cut(s) 463
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
SpeI ACTAGT 1 cut(s) 83
Sse9I AATT 3 cut(s) 169, 176, 276
SsiI CCGC 2 cut(s) 492, 496
SspI AATATT 1 cut(s) 245
SspMI CTAG 2 cut(s) 84, 347
StyD4I CCNGG 2 cut(s) 229, 417
TaaI ACNGT 2 cut(s) 64, 319
TaqI TCGA 2 cut(s) 17, 438
TasI AATT 3 cut(s) 169, 176, 276
TauI GCSGC 1 cut(s) 499
Tru1I TTAA 1 cut(s) 428
Tru9I TTAA 1 cut(s) 428
TscAI CASTG 1 cut(s) 67
TseI GCWGC 3 cut(s) 53, 448, 451
TspRI CASTG 1 cut(s) 67
XspI CTAG 2 cut(s) 84, 347
Zsp2I ATGCAT 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.